Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009763.1

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1477

Gene Structure 1477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009763.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 475 bp

gggaaaaggagactaccaaattgattatgtaccagctccacggatcactgaagctgacaaacaaaatgatagaaagtcattgcagagagcacttgacagaagactttatcttcttatctatggtaacacacatggatctcctaatggaaagccagtctggcattttccagaaaaagtgtacgagtctgaggagacattgcggaagtgtgcagaatctgcattactgtctgtcctaggtgatctgtcccacacatattttgttggaaatgctcctatgggacatattgcaatggagtcatcagcgaatgtgaccgactctccatctttcaagcaattctttttcaagtctcaagtgattgcaacaaacaagttaaaaattgggaagtgtggggattttgtttgggtgaccaaggatgaattgatggaatattttcctgagaaagctgagttcctcagcaagatgatcattagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.82

Weight (kDa)

7.08

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	51, 143
AcuI	CTGAAG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	31, 180
AgsI	TTSAA	2 cut(s)	329, 344
AluBI	AGCT	4 cut(s)	36, 54, 444, 472
AluI	AGCT	4 cut(s)	36, 54, 444, 472
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	3 cut(s)	4, 186, 352
AlwI	GGATC	2 cut(s)	51, 143
AlwNI	CAGNNNCTG	1 cut(s)	216
Asp700I	GAANNNNTTC	1 cut(s)	430
AspA2I	CCTAGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	249, 416
AvrII	CCTAGG	1 cut(s)	233
BbsI	GAAGAC	1 cut(s)	107
Bbv12I	GWGCWC	1 cut(s)	92
BbvCI	CCTCAGC	1 cut(s)	453
BccI	CCATC	2 cut(s)	329, 416
BclI	TGATCA	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	4, 186, 352
BfaI	CTAG	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	158
BlnI	CCTAGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	107
Bpu10I	CCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	334
BsaJI	CCNNGG	3 cut(s)	39, 233, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bse1I	ACTGG	1 cut(s)	153
Bse3DI	GCAATG	3 cut(s)	78, 195, 295
BseDI	CCNNGG	3 cut(s)	39, 233, 409
BseGI	GGATG	1 cut(s)	419
BseMI	GCAATG	3 cut(s)	78, 195, 295
BseMII	CTCAG	4 cut(s)	178, 427, 436, 467
BseNI	ACTGG	1 cut(s)	153
BseRI	GAGGAG	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	92
BslFI	GGGAC	2 cut(s)	230, 292
BsmAI	GTCTC	3 cut(s)	4, 186, 352
BsmFI	GGGAC	2 cut(s)	230, 292
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	4 cut(s)	43, 135, 239, 463
BspACI	CCGC	1 cut(s)	200
BspCNI	CTCAG	4 cut(s)	179, 428, 437, 466
BspPI	GGATC	2 cut(s)	51, 143
BsrDI	GCAATG	3 cut(s)	78, 195, 295
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	3 cut(s)	39, 233, 409
BssMI	GATC	4 cut(s)	43, 135, 239, 463
BssT1I	CCWWGG	2 cut(s)	233, 409
Bst4CI	ACNGT	1 cut(s)	226
BstAPI	GCANNNNNTGC	1 cut(s)	216
BstDEI	CTNAG	4 cut(s)	187, 436, 445, 453
BstDSI	CCRYGG	1 cut(s)	39
BstEII	GGTNACC	1 cut(s)	404
BstF5I	GGATG	1 cut(s)	419
BstKTI	GATC	4 cut(s)	46, 138, 242, 466
BstMAI	GTCTC	3 cut(s)	4, 186, 352
BstMBI	GATC	4 cut(s)	43, 135, 239, 463
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 216
BstPI	GGTNACC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	46
CaiI	CAGNNNCTG	1 cut(s)	216
Csp6I	GTAC	2 cut(s)	30, 179
CviAII	CATG	1 cut(s)	132
CviJI	RGCY	5 cut(s)	36, 54, 152, 444, 472
CviKI_1	RGCY	5 cut(s)	36, 54, 152, 444, 472
CviQI	GTAC	2 cut(s)	30, 179
DdeI	CTNAG	4 cut(s)	187, 436, 445, 453
DpnI	GATC	4 cut(s)	45, 137, 241, 465
DpnII	GATC	4 cut(s)	43, 135, 239, 463
Eco130I	CCWWGG	2 cut(s)	233, 409
Eco57I	CTGAAG	1 cut(s)	70
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoT14I	CCWWGG	2 cut(s)	233, 409
ErhI	CCWWGG	2 cut(s)	233, 409
FaeI	CATG	1 cut(s)	135
FaiI	YATR	6 cut(s)	28, 121, 133, 254, 276, 283
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FaqI	GGGAC	2 cut(s)	230, 292
FatI	CATG	1 cut(s)	131
FbaI	TGATCA	1 cut(s)	463
FokI	GGATG	1 cut(s)	426
FspBI	CTAG	1 cut(s)	234
Hin1II	CATG	1 cut(s)	135
HinfI	GANTC	4 cut(s)	183, 213, 294, 315
HphI	GGTGA	2 cut(s)	249, 416
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	188
Hpy188III	TCNNGA	2 cut(s)	168, 435
Hpy8I	GTNNAC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	226
HpyCH4V	TGCA	5 cut(s)	83, 210, 219, 288, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 216
HpyF3I	CTNAG	4 cut(s)	187, 436, 445, 453
Hsp92II	CATG	1 cut(s)	135
Ksp22I	TGATCA	1 cut(s)	463
Kzo9I	GATC	4 cut(s)	43, 135, 239, 463
LmnI	GCTCC	2 cut(s)	41, 275
LpnPI	CCDG	5 cut(s)	46, 143, 166, 181, 448
MaeI	CTAG	1 cut(s)	234
MaeIII	GTNAC	3 cut(s)	123, 308, 404
MalI	GATC	4 cut(s)	45, 137, 241, 465
MboI	GATC	4 cut(s)	43, 135, 239, 463
MboII	GAAGA	2 cut(s)	102, 112
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	4 cut(s)	19, 333, 376, 417
MlyI	GAGTC	3 cut(s)	192, 303, 309
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	2 cut(s)	182, 462
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	158, 216
NdeII	GATC	4 cut(s)	43, 135, 239, 463
NlaIII	CATG	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	308, 404
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	213
PleI	GAGTC	3 cut(s)	191, 302, 309
PpsI	GAGTC	3 cut(s)	191, 302, 309
PspEI	GGTNACC	1 cut(s)	404
PstNI	CAGNNNCTG	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	135
RsaI	GTAC	2 cut(s)	31, 180
RsaNI	GTAC	2 cut(s)	30, 179
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	43, 135, 239, 463
SchI	GAGTC	3 cut(s)	192, 303, 309
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	5 cut(s)	38, 56, 239, 446, 474
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	4 cut(s)	19, 333, 376, 417
SsiI	CCGC	1 cut(s)	200
SspI	AATATT	1 cut(s)	429
SspMI	CTAG	1 cut(s)	234
StyI	CCWWGG	2 cut(s)	233, 409
TaaI	ACNGT	1 cut(s)	226
TaqII	GACCGA	1 cut(s)	327
TasI	AATT	4 cut(s)	19, 333, 376, 417
TfiI	GAWTC	1 cut(s)	213
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	53
TseFI	GTSAC	2 cut(s)	308, 404
Tsp45I	GTSAC	2 cut(s)	308, 404
TspDTI	ATGAA	1 cut(s)	430
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	53
XmaJI	CCTAGG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.