Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

28098288 .. 28098650

Gene Structure 363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0265700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGTGGACTGGGAGTGAGATTAAGAAAGAGAGGCCTAATATCGAATGGGTTTCTTCTCCGAGCACCAACAGTGAGCCTAAGAAGCTCAGGAAGAAATTGGAATGGTGGGTATCTTTGGATGAAGAGGTGGACTTTCTCAGCTACGTCATCTGCATCGAAGTCGGAGCGGACCTCGAGGTGGAAGAGGCGGGAGAGGAAGAAAAAGCGGCCGAGATGATTGAGGAGCTTGCGGATTTGGTTGGTGCGGACGGAGATCAACCGCTTGTTGCCGCCATGCTGGCCGTCCTCTTACTCAAAGATGATGCCGGGGACGCGGCCGGCCTTCTGCTCTTTCGCGGCGATGCTTTTGCCGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.17

Weight (kDa)

4.12

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	176
AccBSI	CCGCTC	1 cut(s)	170
AccII	CGCG	2 cut(s)	317, 339
AciI	CCGC	9 cut(s)	170, 191, 209, 233, 248, 263, 273, 317, 339
AcoI	YGGCCR	3 cut(s)	210, 282, 318
AfiI	CCNNNNNNNGG	1 cut(s)	181
AluBI	AGCT	3 cut(s)	88, 144, 229
AluI	AGCT	3 cut(s)	88, 144, 229
Alw21I	GWGCWC	1 cut(s)	68
Alw26I	GTCTC	1 cut(s)	351
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	5 cut(s)	35, 210, 282, 318, 322
AspS9I	GGNCC	1 cut(s)	172
AsuC2I	CCSGG	1 cut(s)	310
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	172
Bbv12I	GWGCWC	1 cut(s)	68
BceAI	ACGGC	1 cut(s)	269
BcgI	CGANNNNNNTGC	3 cut(s)	145, 179, 332
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	351
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	4 cut(s)	210, 273, 318, 340
BlsI	GCNGC	4 cut(s)	211, 274, 319, 341
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	172
BmrFI	CCNGG	1 cut(s)	310
BmrI	ACTGGG	1 cut(s)	21
BmsI	GCATC	3 cut(s)	165, 295, 334
BmuI	ACTGGG	1 cut(s)	21
BplI	GAGNNNNNCTC	2 cut(s)	159, 191
Bpu10I	CCTNAGC	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	16
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMII	CTCAG	2 cut(s)	103, 154
BseNI	ACTGG	1 cut(s)	16
BseRI	GAGGAG	1 cut(s)	239
BseX3I	CGGCCG	2 cut(s)	210, 318
Bsh1236I	CGCG	2 cut(s)	317, 339
Bsh1285I	CGRYCG	2 cut(s)	213, 321
BshFI	GGCC	5 cut(s)	37, 212, 284, 320, 324
BsiEI	CGRYCG	2 cut(s)	213, 321
BsiHKAI	GWGCWC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	3 cut(s)	309, 321, 354
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	351
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	5 cut(s)	37, 212, 284, 320, 324
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	9 cut(s)	170, 191, 209, 233, 248, 263, 273, 317, 339
BspANI	GGCC	5 cut(s)	37, 212, 284, 320, 324
BspCNI	CTCAG	2 cut(s)	102, 153
BspFNI	CGCG	2 cut(s)	317, 339
BsrBI	CCGCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	1 cut(s)	256
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	2 cut(s)	120, 180
BstC8I	GCNNGC	3 cut(s)	231, 282, 322
BstDEI	CTNAG	3 cut(s)	81, 89, 140
BstF5I	GGATG	1 cut(s)	127
BstFNI	CGCG	2 cut(s)	317, 339
BstKTI	GATC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	1 cut(s)	256
BstMCI	CGRYCG	2 cut(s)	213, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 281, 314
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	2 cut(s)	317, 339
BstZI	CGGCCG	2 cut(s)	210, 318
BsuRI	GGCC	5 cut(s)	37, 212, 284, 320, 324
BtgZI	GCGATG	1 cut(s)	357
BtsCI	GGATG	1 cut(s)	127
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	3 cut(s)	231, 282, 322
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	172
CseI	GACGC	1 cut(s)	323
CviAII	CATG	1 cut(s)	277
CviJI	RGCY	9 cut(s)	37, 79, 88, 144, 212, 229, 284, 320, 324
CviKI_1	RGCY	9 cut(s)	37, 79, 88, 144, 212, 229, 284, 320, 324
DdeI	CTNAG	3 cut(s)	81, 89, 140
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	3 cut(s)	210, 282, 318
EagI	CGGCCG	2 cut(s)	210, 318
Eam1104I	CTCTTC	2 cut(s)	120, 180
EarI	CTCTTC	2 cut(s)	120, 180
EclXI	CGGCCG	2 cut(s)	210, 318
Eco147I	AGGCCT	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	172
Eco52I	CGGCCG	2 cut(s)	210, 318
Eco88I	CYCGRG	1 cut(s)	176
FaeI	CATG	1 cut(s)	280
FaiI	YATR	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	276
FauI	CCCGC	1 cut(s)	184
Fnu4HI	GCNGC	4 cut(s)	210, 273, 318, 340
FokI	GGATG	1 cut(s)	134
FseI	GGCCGGCC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	210, 273, 318, 340
GluI	GCNGC	4 cut(s)	210, 273, 318, 340
HaeIII	GGCC	5 cut(s)	37, 212, 284, 320, 324
HapII	CCGG	3 cut(s)	309, 321, 354
HgaI	GACGC	1 cut(s)	323
Hin1II	CATG	1 cut(s)	280
HpaII	CCGG	3 cut(s)	309, 321, 354
Hpy166II	GTNNAC	2 cut(s)	9, 133
Hpy188I	TCNGA	2 cut(s)	63, 167
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	2 cut(s)	9, 133
HpyAV	CCTTC	1 cut(s)	335
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	1 cut(s)	156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 281, 314
HpyF3I	CTNAG	3 cut(s)	81, 89, 140
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	1 cut(s)	280
KroI	GCCGGC	1 cut(s)	320
KroNI	GCCGGC	1 cut(s)	322
Kzo9I	GATC	1 cut(s)	256
LmnI	GCTCC	2 cut(s)	167, 226
LpnPI	CCDG	4 cut(s)	76, 266, 322, 334
LweI	GCATC	3 cut(s)	165, 295, 334
MaeII	ACGT	1 cut(s)	147
MalI	GATC	1 cut(s)	258
MbiI	CCGCTC	1 cut(s)	170
MboI	GATC	1 cut(s)	256
MboII	GAAGA	5 cut(s)	48, 106, 137, 197, 212
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	8 cut(s)	27, 121, 172, 181, 185, 190, 217, 299
MroNI	GCCGGC	1 cut(s)	320
MseI	TTAA	1 cut(s)	24
MspI	CCGG	3 cut(s)	309, 321, 354
MspR9I	CCNGG	1 cut(s)	310
MvnI	CGCG	2 cut(s)	317, 339
MwoI	GCNNNNNNNGC	3 cut(s)	85, 281, 314
NaeI	GCCGGC	1 cut(s)	322
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	256
NgoMIV	GCCGGC	1 cut(s)	320
NlaIII	CATG	1 cut(s)	280
NmeAIII	GCCGAG	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	37
PdiI	GCCGGC	1 cut(s)	322
PkrI	GCNGC	4 cut(s)	211, 274, 319, 341
PspPI	GGNCC	1 cut(s)	172
PspXI	VCTCGAGB	1 cut(s)	176
RigI	GGCCGGCC	1 cut(s)	324
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	210, 273, 318, 340
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	1 cut(s)	172
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	7 cut(s)	90, 132, 146, 150, 177, 183, 231
SfaNI	GCATC	3 cut(s)	165, 295, 334
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	1 cut(s)	172
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	98
SseBI	AGGCCT	1 cut(s)	37
SsiI	CCGC	9 cut(s)	170, 191, 209, 233, 248, 263, 273, 317, 339
StuI	AGGCCT	1 cut(s)	37
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	74
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	45, 159, 177
TasI	AATT	1 cut(s)	98
TauI	GCSGC	4 cut(s)	212, 275, 320, 342
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	1 cut(s)	79
TspDTI	ATGAA	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.