Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Reverse (-)

25549747 .. 25553147

Gene Structure 3401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G231400.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCAGAGAACGATTACGATTTTGCGTGGGCCTCTGGTCAGAGACCGAGGGTTTTCCACGAGCTCGTCTTCTTCCCAGAAAATCGTCGCGTCCGTACTGTTCGAGAGGTTGCCTGTTGTCATTCCCAAAATCGACCCCGTCGTTTATGCATATCAGGAGTTCGCGTTTCGGTGGCGACAGCAATATCGGCGCATATATCCAGATGAGCTTTTAGATAAGTCTAATGCTAGGGGAAAGGGTGACTACCATATTGATTATGTACCTGCTCCGCGGATCACTGAAGCTGACAAAATGAATGATAGAAAGTCATTGCAAAGAGCACTTGACAGAAGATTGTATCTTCTTCTCTATGGAAACACGGATGGATCTGCTGGGAAGTCAGTCTGGCATTTTCCAGAAAAGGTTTACCAGTCTGAAGAGACATTGCGGAAGTGTGCAGAATCTGCATTAAAATCTATCTTGGGAGATCTGTCACACACATATTTTGTTGGAAATGCCCCCATGGGCCATATGGCTACACAGTCAACAGAGGATGTGCCAGGCTCTCCATCTGTTAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACCAACAAGTTCAACATTAAGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAACTGCTGGAGTATTTTCCTGAGAAAGCTGAGTTCCTTAATAAGATGATCATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

26.85

Weight (kDa)

9.18

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	271
AccII	CGCG	3 cut(s)	89, 164, 271
AciI	CCGC	3 cut(s)	269, 271, 427
AclWI	GGATC	2 cut(s)	281, 373
AcuI	CTGAAG	2 cut(s)	300, 435
AfaI	GTAC	2 cut(s)	96, 261
AgsI	TTSAA	2 cut(s)	571, 601
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	5 cut(s)	63, 208, 284, 671, 699
AluI	AGCT	5 cut(s)	63, 208, 284, 671, 699
Alw21I	GWGCWC	2 cut(s)	65, 322
Alw26I	GTCTC	3 cut(s)	36, 413, 579
AlwI	GGATC	2 cut(s)	281, 373
AlwNI	CAGNNNCTG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	29, 505
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	2 cut(s)	29, 505
AsuHPI	GGTGA	2 cut(s)	251, 643
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	60
Bbv12I	GWGCWC	2 cut(s)	65, 322
BccI	CCATC	2 cut(s)	356, 556
BciT130I	CCWGG	1 cut(s)	540
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	3 cut(s)	36, 413, 579
BfaI	CTAG	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	466
Bme1390I	CCNGG	1 cut(s)	540
BmgT120I	GGNCC	2 cut(s)	29, 505
BmrFI	CCNGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	60
BpmI	CTGGAG	1 cut(s)	671
BpuEI	CTTGAG	1 cut(s)	561
BsaBI	GATNNNNATC	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	36
BsaJI	CCNNGG	4 cut(s)	46, 269, 501, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	2 cut(s)	308, 422
Bse8I	GATNNNNATC	1 cut(s)	692
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	4 cut(s)	46, 269, 501, 636
BseGI	GGATG	3 cut(s)	367, 538, 646
BseJI	GATNNNNATC	1 cut(s)	692
BseMI	GCAATG	2 cut(s)	308, 422
BseMII	CTCAG	2 cut(s)	654, 663
BseNI	ACTGG	1 cut(s)	409
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	3 cut(s)	89, 164, 271
BshFI	GGCC	2 cut(s)	31, 507
BsiHKAI	GWGCWC	2 cut(s)	65, 322
BsmAI	GTCTC	3 cut(s)	36, 413, 579
BsnI	GGCC	2 cut(s)	31, 507
Bso31I	GGTCTC	1 cut(s)	36
Bsp1286I	GDGCHC	2 cut(s)	65, 322
Bsp143I	GATC	4 cut(s)	273, 365, 466, 690
Bsp19I	CCATGG	1 cut(s)	501
BspACI	CCGC	3 cut(s)	269, 271, 427
BspANI	GGCC	2 cut(s)	31, 507
BspCNI	CTCAG	2 cut(s)	655, 664
BspFNI	CGCG	3 cut(s)	89, 164, 271
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	281, 373
BspTNI	GGTCTC	1 cut(s)	36
BsrDI	GCAATG	2 cut(s)	308, 422
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	4 cut(s)	46, 269, 501, 636
BssMI	GATC	4 cut(s)	273, 365, 466, 690
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	501, 636
Bst2BI	CACGAG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	2 cut(s)	99, 522
Bst6I	CTCTTC	1 cut(s)	411
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	2 cut(s)	663, 672
BstDSI	CCRYGG	2 cut(s)	269, 501
BstEII	GGTNACC	1 cut(s)	631
BstF5I	GGATG	3 cut(s)	367, 538, 646
BstFNI	CGCG	3 cut(s)	89, 164, 271
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	4 cut(s)	276, 368, 469, 693
BstMAI	GTCTC	3 cut(s)	36, 413, 579
BstMBI	GATC	4 cut(s)	273, 365, 466, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 443
BstNI	CCWGG	1 cut(s)	540
BstPI	GGTNACC	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	538
BstUI	CGCG	3 cut(s)	89, 164, 271
BstV2I	GAAGAC	1 cut(s)	60
BstX2I	RGATCY	2 cut(s)	365, 466
BstYI	RGATCY	2 cut(s)	365, 466
BsuRI	GGCC	2 cut(s)	31, 507
BtgI	CCRYGG	2 cut(s)	269, 501
BtsCI	GGATG	3 cut(s)	367, 538, 646
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	271
CaiI	CAGNNNCTG	1 cut(s)	443
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	2 cut(s)	29, 505
Cfr42I	CCGCGG	1 cut(s)	272
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	95, 260
CviAII	CATG	1 cut(s)	502
CviJI	RGCY	9 cut(s)	31, 63, 208, 284, 507, 515, 543, 671, 699
CviKI_1	RGCY	9 cut(s)	31, 63, 208, 284, 507, 515, 543, 671, 699
CviQI	GTAC	2 cut(s)	95, 260
DdeI	CTNAG	2 cut(s)	663, 672
DpnI	GATC	4 cut(s)	275, 367, 468, 692
DpnII	GATC	4 cut(s)	273, 365, 466, 690
Eam1104I	CTCTTC	1 cut(s)	411
EarI	CTCTTC	1 cut(s)	411
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	501, 636
Eco24I	GRGCYC	1 cut(s)	65
Eco31I	GGTCTC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	2 cut(s)	300, 435
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	538
EcoT14I	CCWWGG	2 cut(s)	501, 636
EcoT22I	ATGCAT	1 cut(s)	151
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	501, 636
FaeI	CATG	1 cut(s)	505
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FatI	CATG	1 cut(s)	501
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	3 cut(s)	374, 545, 653
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	1 cut(s)	191
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	671
HaeIII	GGCC	2 cut(s)	31, 507
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	1 cut(s)	505
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HincII	GTYRAC	1 cut(s)	525
HindII	GTYRAC	1 cut(s)	525
HinfI	GANTC	1 cut(s)	440
HphI	GGTGA	2 cut(s)	251, 643
Hpy166II	GTNNAC	2 cut(s)	406, 525
Hpy188I	TCNGA	2 cut(s)	41, 415
Hpy188III	TCNNGA	5 cut(s)	103, 155, 200, 395, 662
Hpy8I	GTNNAC	2 cut(s)	406, 525
Hpy99I	CGWCG	2 cut(s)	89, 143
HpyCH4III	ACNGT	2 cut(s)	99, 522
HpyCH4V	TGCA	6 cut(s)	4, 149, 313, 437, 446, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 443
HpyF3I	CTNAG	2 cut(s)	663, 672
Hsp92II	CATG	1 cut(s)	505
HspAI	GCGC	1 cut(s)	190
Ksp22I	TGATCA	1 cut(s)	690
KspI	CCGCGG	1 cut(s)	272
Kzo9I	GATC	4 cut(s)	273, 365, 466, 690
LmnI	GCTCC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	3 cut(s)	239, 471, 631
MalI	GATC	4 cut(s)	275, 367, 468, 692
MboI	GATC	4 cut(s)	273, 365, 466, 690
MboII	GAAGA	6 cut(s)	60, 63, 332, 335, 342, 428
MflI	RGATCY	2 cut(s)	365, 466
MhlI	GDGCHC	2 cut(s)	65, 322
MluCI	AATT	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	5 cut(s)	41, 42, 99, 523, 610
Mph1103I	ATGCAT	1 cut(s)	151
MseI	TTAA	4 cut(s)	449, 555, 606, 681
MspA1I	CMGCKG	2 cut(s)	271, 699
MspR9I	CCNGG	1 cut(s)	540
MvaI	CCWGG	1 cut(s)	540
MvnI	CGCG	3 cut(s)	89, 164, 271
MwoI	GCNNNNNNNGC	2 cut(s)	187, 443
NcoI	CCATGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	4 cut(s)	273, 365, 466, 690
NlaIII	CATG	1 cut(s)	505
NmuCI	GTSAC	3 cut(s)	239, 471, 631
NsiI	ATGCAT	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 138
PfeI	GAWTC	1 cut(s)	440
PflFI	GACNNNGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	631
PspFI	CCCAGC	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	538
PspPI	GGNCC	2 cut(s)	29, 505
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	2 cut(s)	365, 466
PsyI	GACNNNGTC	1 cut(s)	137
PvuII	CAGCTG	1 cut(s)	699
RsaI	GTAC	2 cut(s)	96, 261
RsaNI	GTAC	2 cut(s)	95, 260
SacI	GAGCTC	1 cut(s)	65
SacII	CCGCGG	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	449, 555, 606, 681
Sau3AI	GATC	4 cut(s)	273, 365, 466, 690
Sau96I	GGNCC	2 cut(s)	29, 505
ScrFI	CCNGG	1 cut(s)	540
SduI	GDGCHC	2 cut(s)	65, 322
SetI	ASST	8 cut(s)	65, 110, 210, 265, 286, 405, 673, 701
Sfr303I	CCGCGG	1 cut(s)	272
SgrBI	CCGCGG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	1 cut(s)	560
SsiI	CCGC	3 cut(s)	269, 271, 427
SspMI	CTAG	1 cut(s)	228
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	538
StyI	CCWWGG	2 cut(s)	501, 636
TaaI	ACNGT	2 cut(s)	99, 522
TaqI	TCGA	2 cut(s)	102, 132
TaqII	GACCGA	1 cut(s)	60
TasI	AATT	1 cut(s)	560
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	4 cut(s)	449, 555, 606, 681
Tru9I	TTAA	4 cut(s)	449, 555, 606, 681
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	3 cut(s)	239, 471, 631
Tsp45I	GTSAC	3 cut(s)	239, 471, 631
TspDTI	ATGAA	2 cut(s)	308, 657
TspGWI	ACGGA	2 cut(s)	82, 374
TspRI	CASTG	1 cut(s)	283
Tth111I	GACNNNGTC	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	508
XspI	CTAG	1 cut(s)	228
Zsp2I	ATGCAT	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.