Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009109.1

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

3381 .. 5890

Gene Structure 2510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009109.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

atgcggaggtcgattgcgagtctgggtgggtccctcgtcaaaagccgagggtttagcacgagctcgtcgccggagaaaattgtcgcgtccgtactcttcgagaggctcccggttgttattcccaaaatcgaccccatcgtctatgcatttcaggagttctcgtttcggtggcgacagcaatatcgacgcagatatccggacgaacttttagacaagtctaatgctaggggaaaaggagactatcaaattgattatgtaccggctccacggatcactgaagctgacaaacaaaatgatagaaagtcattgcagagagcacttgacagaagactttatcttcttatctatggtaacacacatggatatcctaatggaaagccagtctggcattttccagaaaaagtgtacgagtctgaggagacattgcggaagtgtgcagaatctgcattacagtctgtcctaggtgatctgtcccacacgtattttgttggaaatgctcctatgggacatattgcaatggagtcatcagagaatgtgaccgactctccagctttcaagcaattctttttcaagtctcaagtgattgcaacaaacaagttaaaaattgggaagtgtgaggattttgtttgggtgaccaaggatgaattgatggaatattttcctgagaaagctgagttcctcagcaagatgatcattagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

26.84

Weight (kDa)

9.05

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	137
AccII	CGCG	1 cut(s)	86
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	4, 427
AclWI	GGATC	1 cut(s)	278
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	93, 258, 407
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	556, 571
AluBI	AGCT	5 cut(s)	63, 281, 551, 671, 699
AluI	AGCT	5 cut(s)	63, 281, 551, 671, 699
Alw21I	GWGCWC	2 cut(s)	65, 319
Alw26I	GTCTC	3 cut(s)	231, 413, 579
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	443
Aor13HI	TCCGGA	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	657
AspA2I	CCTAGG	1 cut(s)	460
AspS9I	GGNCC	1 cut(s)	30
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	476, 643
AvaII	GGWCC	1 cut(s)	30
AvrII	CCTAGG	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	65, 319
BbvCI	CCTCAGC	1 cut(s)	680
BccI	CCATC	2 cut(s)	143, 643
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	3 cut(s)	231, 413, 579
BfaI	CTAG	2 cut(s)	225, 461
BglI	GCCNNNNNGGC	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	460
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	4 cut(s)	31, 32, 107, 264
BmrFI	CCNGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	334
BpmI	CTGGAG	1 cut(s)	531
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	480
BsaJI	CCNNGG	4 cut(s)	46, 266, 460, 636
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 529, 559
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	3 cut(s)	305, 422, 522
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	4 cut(s)	46, 266, 460, 636
BseGI	GGATG	1 cut(s)	646
BseMI	GCAATG	3 cut(s)	305, 422, 522
BseMII	CTCAG	4 cut(s)	405, 654, 663, 694
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	1 cut(s)	86
BsiHKAI	GWGCWC	2 cut(s)	65, 319
BsiSI	CCGG	4 cut(s)	71, 110, 197, 260
BslFI	GGGAC	3 cut(s)	16, 457, 519
BsmAI	GTCTC	3 cut(s)	231, 413, 579
BsmFI	GGGAC	3 cut(s)	16, 457, 519
Bsp1286I	GDGCHC	2 cut(s)	65, 319
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	3 cut(s)	270, 466, 690
BspACI	CCGC	2 cut(s)	4, 427
BspCNI	CTCAG	4 cut(s)	406, 655, 664, 693
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	86
BspLI	GGNNCC	4 cut(s)	31, 32, 107, 264
BspPI	GGATC	1 cut(s)	278
BsrDI	GCAATG	3 cut(s)	305, 422, 522
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	46, 266, 460, 636
BssMI	GATC	3 cut(s)	270, 466, 690
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	460, 636
Bst2BI	CACGAG	1 cut(s)	58
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	1 cut(s)	101
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstBAI	YACGTR	1 cut(s)	480
BstDEI	CTNAG	4 cut(s)	414, 663, 672, 680
BstDSI	CCRYGG	1 cut(s)	266
BstEII	GGTNACC	1 cut(s)	631
BstF5I	GGATG	1 cut(s)	646
BstFNI	CGCG	1 cut(s)	86
BstKTI	GATC	3 cut(s)	273, 469, 693
BstMAI	GTCTC	3 cut(s)	231, 413, 579
BstMBI	GATC	3 cut(s)	270, 466, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 443
BstPI	GGTNACC	1 cut(s)	631
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	86
BstV2I	GAAGAC	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	646
BtsIMutI	CAGTG	1 cut(s)	273
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	30
CseI	GACGC	2 cut(s)	75, 195
Csp6I	GTAC	3 cut(s)	92, 257, 406
CviAII	CATG	1 cut(s)	359
CviJI	RGCY	9 cut(s)	45, 63, 106, 263, 281, 379, 551, 671, 699
CviKI_1	RGCY	9 cut(s)	45, 63, 106, 263, 281, 379, 551, 671, 699
CviQI	GTAC	3 cut(s)	92, 257, 406
DdeI	CTNAG	4 cut(s)	414, 663, 672, 680
DpnI	GATC	3 cut(s)	272, 468, 692
DpnII	GATC	3 cut(s)	270, 466, 690
DrdI	GACNNNNNNGTC	1 cut(s)	137
DseDI	GACNNNNNNGTC	1 cut(s)	137
Eam1104I	CTCTTC	1 cut(s)	101
EarI	CTCTTC	1 cut(s)	101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	460, 636
Eco24I	GRGCYC	1 cut(s)	65
Eco32I	GATATC	2 cut(s)	194, 365
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	631
EcoRV	GATATC	2 cut(s)	194, 365
EcoT14I	CCWWGG	2 cut(s)	460, 636
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	460, 636
FaeI	CATG	1 cut(s)	362
FaiI	YATR	6 cut(s)	144, 255, 348, 360, 503, 510
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	3 cut(s)	16, 457, 519
FatI	CATG	1 cut(s)	358
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	1 cut(s)	653
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	225, 461
GsuI	CTGGAG	1 cut(s)	531
HapII	CCGG	4 cut(s)	71, 110, 197, 260
HgaI	GACGC	2 cut(s)	75, 195
Hin1II	CATG	1 cut(s)	362
HinfI	GANTC	5 cut(s)	19, 410, 440, 521, 542
HpaII	CCGG	4 cut(s)	71, 110, 197, 260
HphI	GGTGA	2 cut(s)	476, 643
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	415, 529
Hpy188III	TCNNGA	5 cut(s)	100, 152, 197, 395, 662
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	2 cut(s)	70, 189
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	6 cut(s)	146, 310, 437, 446, 515, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 443
HpyF3I	CTNAG	4 cut(s)	414, 663, 672, 680
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	1 cut(s)	362
KflI	GGGWCCC	1 cut(s)	30
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	3 cut(s)	270, 466, 690
LmnI	GCTCC	3 cut(s)	111, 268, 502
MaeI	CTAG	2 cut(s)	225, 461
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	3 cut(s)	350, 535, 631
MalI	GATC	3 cut(s)	272, 468, 692
MboI	GATC	3 cut(s)	270, 466, 690
MboII	GAAGA	3 cut(s)	88, 329, 339
MhlI	GDGCHC	2 cut(s)	65, 319
MluCI	AATT	5 cut(s)	78, 246, 560, 603, 644
MlyI	GAGTC	4 cut(s)	28, 419, 530, 536
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	6 cut(s)	41, 44, 96, 409, 610, 689
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	1 cut(s)	599
MspI	CCGG	4 cut(s)	71, 110, 197, 260
MspR9I	CCNGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	385, 443
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	3 cut(s)	270, 466, 690
NlaIII	CATG	1 cut(s)	362
NlaIV	GGNNCC	4 cut(s)	31, 32, 107, 264
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	535, 631
NsiI	ATGCAT	1 cut(s)	148
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	440
PleI	GAGTC	4 cut(s)	27, 418, 529, 536
PpsI	GAGTC	4 cut(s)	27, 418, 529, 536
Ppu21I	YACGTR	1 cut(s)	480
PpuMI	RGGWCCY	1 cut(s)	30
Psp124BI	GAGCTC	1 cut(s)	65
Psp5II	RGGWCCY	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	631
PspN4I	GGNNCC	4 cut(s)	31, 32, 107, 264
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PstNI	CAGNNNCTG	1 cut(s)	443
RsaI	GTAC	3 cut(s)	93, 258, 407
RsaNI	GTAC	3 cut(s)	92, 257, 406
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	599
Sau3AI	GATC	3 cut(s)	270, 466, 690
Sau96I	GGNCC	1 cut(s)	30
SchI	GAGTC	4 cut(s)	28, 419, 530, 536
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	2 cut(s)	65, 319
SetI	ASST	8 cut(s)	11, 65, 283, 466, 482, 553, 673, 701
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	5 cut(s)	78, 246, 560, 603, 644
SsiI	CCGC	2 cut(s)	4, 427
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	2 cut(s)	225, 461
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	460, 636
TaaI	ACNGT	1 cut(s)	453
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	4 cut(s)	11, 99, 129, 184
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	5 cut(s)	78, 246, 560, 603, 644
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	535, 631
Tsp45I	GTSAC	2 cut(s)	535, 631
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	2 cut(s)	79, 283
TspRI	CASTG	1 cut(s)	280
VpaK11BI	GGWCC	1 cut(s)	30
XmaJI	CCTAGG	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	225, 461
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.