Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Forward (+)

24024194 .. 24026886

Gene Structure 2693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0230500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCGGAGATGAAGTCAATTGCGGTGGTGGGCGGCGGCCAAATGGGTTCTGGTATAGCCCAACTCGCCGCCATGCACGGATGCGATGCTTGGCTCCTAGACACCGACCCTAGTGCTCTAACCAGAGCCAACAAGTCCATCTCCCACTCCATCCAGCGCCTCGTTTCCAAAGGACAACTCACTCAGGCTGTTGGTAAAGATGCTTTGGGCCGTCTGCGGTATACCTCAAACTTGCAAGAACTTTCTTCAGCAGATGTTATTATTGAAGCTATTGTGGAGTCTGAAGATGTGAAGAAAAAGCTATTTATTGAACTAGATAAGATCACAAAAAGTTCTGCCATACTGGCATCTAATACAAGTTCCATCTCCATTACTCATCTGGCAGCAGCAACTAGCAGGCCGAAGCAGGTGATTGGCATGCATTTTATGAACCCTCCTCCTATAATGAAACTTGTTGAGATCGTGCGAGGGGCAGACACATCAGATGAGACTTTTAAAGCTACAAAAGCATTGGCAGAAAGGTTTGGCAAGACAGTGATATGCTCTCGGGATTATGCTGGCTTTGTTGTAAACAGGATCCTAATGCCGATGATAAATGAAGCATTTTTTACACTCTATACTGGTGTGGCAACAAAGGAAGACATTGATGTGGGAATGAAGTTGGGAACAAATCATCCAATGGGTCCTTTAGAGCTTGCAGATTTCATTGGATTGGATGTCTGCTTATCAATCATGAAAGTTCTCCATGCTGGCCTTGGCAACAGTAAATATGCTCCCTGCCCACTTCTTGTACGGTATGTTGATGCAGGTCGACTCGGAAGAAAACGAGGTATTGGGGTATACGATTATCGTCAAATGCCTGATGCAGTAAAACCTTCTTCCAAGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

31.96

Weight (kDa)

9.06

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
3HCDH_N	PF02737	7 - 184	1.3e-63	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH	PF00725	187 - 283	5.8e-35	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	397
Acc36I	ACCTGC	2 cut(s)	397, 797
AccI	GTMKAC	3 cut(s)	221, 811, 840
AciI	CCGC	5 cut(s)	23, 33, 36, 69, 217
AclWI	GGATC	2 cut(s)	571, 584
AcoI	YGGCCR	1 cut(s)	37
AcuI	CTGAAG	2 cut(s)	231, 303
AfaI	GTAC	1 cut(s)	792
AgsI	TTSAA	2 cut(s)	266, 311
AloI	GAACNNNNNNTCC	2 cut(s)	658, 690
AluBI	AGCT	5 cut(s)	269, 301, 500, 694, 886
AluI	AGCT	5 cut(s)	269, 301, 500, 694, 886
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	571, 584
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	4 cut(s)	37, 208, 398, 751
ApeKI	GCWGC	2 cut(s)	383, 386
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	2 cut(s)	208, 683
AsuHPI	GGTGA	1 cut(s)	421
AvaI	CYCGRG	1 cut(s)	546
AvaII	GGWCC	1 cut(s)	683
BamHI	GGATCC	1 cut(s)	576
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	395, 398
BccI	CCATC	3 cut(s)	146, 158, 371
BceAI	ACGGC	1 cut(s)	195
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	4 cut(s)	98, 111, 314, 393
BfoI	RGCGCY	1 cut(s)	160
BfuAI	ACCTGC	2 cut(s)	397, 797
BglI	GCCNNNNNGGC	1 cut(s)	344
BisI	GCNGC	5 cut(s)	34, 37, 69, 384, 387
BlsI	GCNGC	5 cut(s)	35, 38, 70, 385, 388
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	2 cut(s)	208, 683
BmiI	GGNNCC	3 cut(s)	95, 578, 684
BmsI	GCATC	6 cut(s)	71, 76, 190, 356, 793, 853
BpiI	GAAGAC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	754
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bse1I	ACTGG	2 cut(s)	348, 625
BseDI	CCNNGG	1 cut(s)	754
BseGI	GGATG	4 cut(s)	86, 150, 673, 721
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	348, 625
BseRI	GAGGAG	1 cut(s)	426
BseXI	GCAGC	2 cut(s)	395, 398
BshFI	GGCC	4 cut(s)	39, 210, 400, 753
BsiHKAI	GWGCWC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	4 cut(s)	39, 210, 400, 753
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	321, 459, 576
BspACI	CCGC	5 cut(s)	23, 33, 36, 69, 217
BspANI	GGCC	4 cut(s)	39, 210, 400, 753
BspCNI	CTCAG	1 cut(s)	196
BspHI	TCATGA	1 cut(s)	732
BspLI	GGNNCC	3 cut(s)	95, 578, 684
BspMI	ACCTGC	2 cut(s)	397, 797
BspPI	GGATC	2 cut(s)	571, 584
BsrI	ACTGG	2 cut(s)	348, 625
BssECI	CCNNGG	1 cut(s)	754
BssMI	GATC	3 cut(s)	321, 459, 576
BssNAI	GTATAC	2 cut(s)	222, 841
BssT1I	CCWWGG	1 cut(s)	754
Bst1107I	GTATAC	2 cut(s)	222, 841
Bst4CI	ACNGT	3 cut(s)	535, 764, 795
BstC8I	GCNNGC	5 cut(s)	398, 419, 559, 696, 751
BstDEI	CTNAG	1 cut(s)	183
BstF5I	GGATG	4 cut(s)	86, 150, 673, 721
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	324, 462, 579
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	3 cut(s)	321, 459, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 344, 506
BstNSI	RCATGY	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	395, 398
BstV2I	GAAGAC	1 cut(s)	645
BstX2I	RGATCY	1 cut(s)	576
BstYI	RGATCY	1 cut(s)	576
BstZ17I	GTATAC	2 cut(s)	222, 841
BsuRI	GGCC	4 cut(s)	39, 210, 400, 753
BtgZI	GCGATG	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	86, 150, 673, 721
BtsIMutI	CAGTG	1 cut(s)	540
BveI	ACCTGC	2 cut(s)	397, 797
Cac8I	GCNNGC	5 cut(s)	398, 419, 559, 696, 751
CciI	TCATGA	1 cut(s)	732
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	208, 683
Csp6I	GTAC	1 cut(s)	791
CspCI	CAANNNNNGTGG	2 cut(s)	6, 41
CviAII	CATG	4 cut(s)	73, 418, 733, 746
CviQI	GTAC	1 cut(s)	791
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	3 cut(s)	323, 461, 578
DpnII	GATC	3 cut(s)	321, 459, 576
DraI	TTTAAA	1 cut(s)	496
EaeI	YGGCCR	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	754
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	2 cut(s)	231, 303
Eco88I	CYCGRG	1 cut(s)	546
EcoO109I	RGGNCCY	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	754
EcoT22I	ATGCAT	1 cut(s)	423
ErhI	CCWWGG	1 cut(s)	754
FaeI	CATG	4 cut(s)	76, 421, 736, 749
FatI	CATG	4 cut(s)	72, 417, 732, 745
FblI	GTMKAC	3 cut(s)	221, 811, 840
Fnu4HI	GCNGC	5 cut(s)	34, 37, 69, 384, 387
FokI	GGATG	4 cut(s)	93, 137, 660, 728
Fsp4HI	GCNGC	5 cut(s)	34, 37, 69, 384, 387
FspBI	CTAG	4 cut(s)	98, 111, 314, 393
GlaI	GCGC	1 cut(s)	158
GluI	GCNGC	5 cut(s)	34, 37, 69, 384, 387
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	4 cut(s)	39, 210, 400, 753
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	4 cut(s)	76, 421, 736, 749
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	812
HindII	GTYRAC	1 cut(s)	812
HindIII	AAGCTT	1 cut(s)	884
HinfI	GANTC	2 cut(s)	278, 813
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	4 cut(s)	222, 571, 812, 841
Hpy188I	TCNGA	4 cut(s)	7, 283, 484, 818
Hpy188III	TCNNGA	2 cut(s)	548, 733
Hpy8I	GTNNAC	4 cut(s)	222, 571, 812, 841
HpyAV	CCTTC	1 cut(s)	885
HpyCH4III	ACNGT	3 cut(s)	535, 764, 795
HpyCH4V	TGCA	6 cut(s)	76, 235, 421, 698, 806, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 344, 506
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	4 cut(s)	76, 421, 736, 749
HspAI	GCGC	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	321, 459, 576
LmnI	GCTCC	2 cut(s)	99, 778
Lsp1109I	GCAGC	2 cut(s)	395, 398
LweI	GCATC	6 cut(s)	71, 76, 190, 356, 793, 853
MaeI	CTAG	4 cut(s)	98, 111, 314, 393
MalI	GATC	3 cut(s)	323, 461, 578
MboI	GATC	3 cut(s)	321, 459, 576
MboII	GAAGA	6 cut(s)	237, 296, 304, 650, 831, 870
MfeI	CAATTG	1 cut(s)	18
MflI	RGATCY	1 cut(s)	576
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	2 cut(s)	287, 807
MnlI	CCTC	6 cut(s)	170, 235, 444, 447, 461, 821
Mph1103I	ATGCAT	1 cut(s)	423
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	647
MunI	CAATTG	1 cut(s)	18
MwoI	GCNNNNNNNGC	3 cut(s)	65, 344, 506
NdeII	GATC	3 cut(s)	321, 459, 576
NlaIII	CATG	4 cut(s)	76, 421, 736, 749
NlaIV	GGNNCC	3 cut(s)	95, 578, 684
NsiI	ATGCAT	1 cut(s)	423
NspI	RCATGY	1 cut(s)	421
PaeI	GCATGC	1 cut(s)	421
PagI	TCATGA	1 cut(s)	732
PaqCI	CACCTGC	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	35, 38, 70, 385, 388
PleI	GAGTC	2 cut(s)	286, 807
PpsI	GAGTC	2 cut(s)	286, 807
PpuMI	RGGWCCY	1 cut(s)	683
Psp5II	RGGWCCY	1 cut(s)	683
PspN4I	GGNNCC	3 cut(s)	95, 578, 684
PspPI	GGNCC	2 cut(s)	208, 683
PspPPI	RGGWCCY	1 cut(s)	683
PsuI	RGATCY	1 cut(s)	576
RsaI	GTAC	1 cut(s)	792
RsaNI	GTAC	1 cut(s)	791
RseI	CAYNNNNRTG	1 cut(s)	647
SalI	GTCGAC	1 cut(s)	810
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	5 cut(s)	34, 37, 69, 384, 387
Sau3AI	GATC	3 cut(s)	321, 459, 576
Sau96I	GGNCC	2 cut(s)	208, 683
SchI	GAGTC	2 cut(s)	287, 807
SduI	GDGCHC	1 cut(s)	118
SfaNI	GCATC	6 cut(s)	71, 76, 190, 356, 793, 853
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	647
SphI	GCATGC	1 cut(s)	421
Sse9I	AATT	1 cut(s)	18
SsiI	CCGC	5 cut(s)	23, 33, 36, 69, 217
SspMI	CTAG	4 cut(s)	98, 111, 314, 393
StyI	CCWWGG	1 cut(s)	754
TaaI	ACNGT	3 cut(s)	535, 764, 795
TaqI	TCGA	1 cut(s)	811
TasI	AATT	1 cut(s)	18
TauI	GCSGC	3 cut(s)	36, 39, 71
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	540
TseI	GCWGC	2 cut(s)	383, 386
TspDTI	ATGAA	7 cut(s)	26, 443, 461, 612, 671, 694, 749
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	1 cut(s)	421
XcmI	CCANNNNNNNNNTGG	3 cut(s)	47, 376, 752
XmiI	GTMKAC	3 cut(s)	221, 811, 840
XspI	CTAG	4 cut(s)	98, 111, 314, 393
Zsp2I	ATGCAT	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.