Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002375

Physical Location & Seq

Genomic Coordinates Reverse (-)

20768935 .. 20771295

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g18280.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGCAGAGGACCATCCCGCTTTTGCGTGGGACTCTGGCGAGAGGCCGCGGATTTTCCACCAGCCCATCGTCTTCTTCCGAGAAAATCGTCGCGTCTGTACTCTTCGAGAGGCTGCCTGTCGTCATTCCCAAAATCGACCCCGTCGTTTATGCGTATCAGGAGTTCGCGTTCCGGTGGCGGCAGCAATATCGGCGCATATATCCAGATGAGCTTTTAGACAAGTCCAATGCTAGGGGAAAAGGTGACTACCAAATTGATTATGTACCTGCTCCACGGATCACCGAAGCTGACAAAACGAATGATAAAAAGTCATTGCAGAGAGCACTTGACAGAAGACTATATCTTCTGCTCTACGGAAAAACTGATGGATCTGCTGGGAAGTCAGTCTGGCAATTTCCCGAAAAAGTTTACCAGTCTGAAGAGACACTGCGGAAGTGTGCCGAATCTGCTTTAAAATCTGTCTTGGGAAACCTCTCACACACGTACTTTGTTGGAAATGCGCCCATGGGCCTTATGGAACAGCCAGAAGAGAATATTAAGCAATTCTTTTTCAAATCTCAAGTGATTGCAGCCAACAAGTTTGACATTGGGAAGTGTGAGGACTTTGTCTGGGTGACCAAGGATGAACTGATAGAGTACTTTCCTGAGAAAGCTGACTTCCTTAACAAAATGATCATCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

26.13

Weight (kDa)

9.04

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002375)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14620 AT1G14620
fragaria_vesca	FvH4_7g21940
malus_domestica	MD07G1193700.v1.1 MD07G1194000.v1.1 MD10G1064600.v1.1
prunus_persica	Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1 Prupe.2G231400_v2.0.a1
pyrus_communis	pycom07g18280 pycom10g05050
rosa_chinensis	RchiOBHm_Chr1g0366261 RchiOBHm_Chr3g0490801 RchiOBHm_Chr3g0492131
rosa_laevigata	RLG00000022824 RLG00000027357
rosa_multiflora	Rmu_sc0003736.1_g000005 Rmu_sc0009109.1_g000001 Rmu_sc0009763.1_g000001
rosa_roxburghii	Rroxscaffold_4G00290050 Rroxscaffold_4G00290380
rosa_rugosa	Rorug01G0328300 Rorug02G0265400 Rorug02G0265500 Rorug02G0265700 Rorug02G0267200 Rorug02G0267800 Rorug02G0268500 Rorug02G0268700 Rorug02G0269900 Rorug03G0246900 Rorug03G0247500 Rorug05G0230500
rosa_samantha	Rh1AG336600 Rh1BG298100 Rh1CG313700 Rh1DG329600 Rh3CG333200 Rh3DG335300
rosa_wichuraiana	Rw1G029830 Rw3G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	274
AccII	CGCG	3 cut(s)	48, 92, 167
AciI	CCGC	5 cut(s)	17, 46, 48, 178, 430
AclWI	GGATC	2 cut(s)	284, 376
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	4 cut(s)	99, 264, 485, 638
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	480
AgsI	TTSAA	1 cut(s)	553
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	4 cut(s)	211, 287, 653, 681
AluI	AGCT	4 cut(s)	211, 287, 653, 681
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	2 cut(s)	284, 376
AoxI	GGCC	2 cut(s)	43, 508
ApeKI	GCWGC	3 cut(s)	112, 181, 569
AspLEI	GCGC	2 cut(s)	195, 502
AspS9I	GGNCC	2 cut(s)	9, 508
AsuHPI	GGTGA	3 cut(s)	254, 271, 625
AvaII	GGWCC	1 cut(s)	9
BbsI	GAAGAC	2 cut(s)	63, 340
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	99, 193, 581
BccI	CCATC	3 cut(s)	20, 73, 359
BcgI	CGANNNNNNTGC	2 cut(s)	170, 204
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	416
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	274
BisI	GCNGC	5 cut(s)	46, 113, 179, 182, 570
BlsI	GCNGC	5 cut(s)	47, 114, 180, 183, 571
BmcAI	AGTACT	1 cut(s)	638
Bme18I	GGWCC	1 cut(s)	9
BmgT120I	GGNCC	2 cut(s)	9, 508
BpiI	GAAGAC	2 cut(s)	63, 340
BpuEI	CTTGAG	1 cut(s)	543
BsaAI	YACGTR	1 cut(s)	483
BsaJI	CCNNGG	4 cut(s)	46, 272, 504, 618
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	311
BseDI	CCNNGG	4 cut(s)	46, 272, 504, 618
BseGI	GGATG	2 cut(s)	12, 628
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	311
BseMII	CTCAG	1 cut(s)	636
BseNI	ACTGG	1 cut(s)	412
BseXI	GCAGC	3 cut(s)	99, 193, 581
BseYI	CCCAGC	1 cut(s)	374
Bsh1236I	CGCG	3 cut(s)	48, 92, 167
BshFI	GGCC	2 cut(s)	45, 510
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	172
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	45, 510
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	276, 368, 672
Bsp19I	CCATGG	1 cut(s)	504
BspACI	CCGC	5 cut(s)	17, 46, 48, 178, 430
BspANI	GGCC	2 cut(s)	45, 510
BspCNI	CTCAG	1 cut(s)	637
BspFNI	CGCG	3 cut(s)	48, 92, 167
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	2 cut(s)	284, 376
BsrDI	GCAATG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	412
BssECI	CCNNGG	4 cut(s)	46, 272, 504, 618
BssMI	GATC	3 cut(s)	276, 368, 672
BssT1I	CCWWGG	2 cut(s)	504, 618
Bst6I	CTCTTC	3 cut(s)	107, 414, 522
BstBAI	YACGTR	1 cut(s)	483
BstDEI	CTNAG	1 cut(s)	645
BstDSI	CCRYGG	3 cut(s)	46, 272, 504
BstEII	GGTNACC	1 cut(s)	613
BstF5I	GGATG	2 cut(s)	12, 628
BstFNI	CGCG	3 cut(s)	48, 92, 167
BstHHI	GCGC	2 cut(s)	195, 502
BstKTI	GATC	3 cut(s)	279, 371, 675
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	3 cut(s)	276, 368, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	190, 446
BstPI	GGTNACC	1 cut(s)	613
BstUI	CGCG	3 cut(s)	48, 92, 167
BstV1I	GCAGC	3 cut(s)	99, 193, 581
BstV2I	GAAGAC	2 cut(s)	63, 340
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BsuRI	GGCC	2 cut(s)	45, 510
BtgI	CCRYGG	3 cut(s)	46, 272, 504
BtsCI	GGATG	2 cut(s)	12, 628
BtsI	GCAGTG	1 cut(s)	425
BtsIMutI	CAGTG	1 cut(s)	425
BveI	ACCTGC	1 cut(s)	274
CfoI	GCGC	2 cut(s)	195, 502
Cfr13I	GGNCC	2 cut(s)	9, 508
Cfr42I	CCGCGG	1 cut(s)	49
CseI	GACGC	1 cut(s)	81
Csp6I	GTAC	4 cut(s)	98, 263, 484, 637
CviAII	CATG	1 cut(s)	505
CviQI	GTAC	4 cut(s)	98, 263, 484, 637
DdeI	CTNAG	1 cut(s)	645
DpnI	GATC	3 cut(s)	278, 370, 674
DpnII	GATC	3 cut(s)	276, 368, 672
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	3 cut(s)	107, 414, 522
EarI	CTCTTC	3 cut(s)	107, 414, 522
Eco130I	CCWWGG	2 cut(s)	504, 618
Eco47I	GGWCC	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	613
EcoO65I	GGTNACC	1 cut(s)	613
EcoT14I	CCWWGG	2 cut(s)	504, 618
ErhI	CCWWGG	2 cut(s)	504, 618
FaeI	CATG	1 cut(s)	508
FaiI	YATR	7 cut(s)	150, 197, 199, 261, 340, 506, 515
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	1 cut(s)	504
FauI	CCCGC	1 cut(s)	24
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	5 cut(s)	46, 113, 179, 182, 570
FokI	GGATG	1 cut(s)	635
Fsp4HI	GCNGC	5 cut(s)	46, 113, 179, 182, 570
FspBI	CTAG	1 cut(s)	231
GlaI	GCGC	2 cut(s)	194, 501
GluI	GCNGC	5 cut(s)	46, 113, 179, 182, 570
GsaI	CCCAGC	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	45, 510
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	81
HhaI	GCGC	2 cut(s)	195, 502
Hin1II	CATG	1 cut(s)	508
Hin6I	GCGC	2 cut(s)	193, 500
HinP1I	GCGC	2 cut(s)	193, 500
HinfI	GANTC	2 cut(s)	31, 443
HpaII	CCGG	1 cut(s)	172
HphI	GGTGA	3 cut(s)	254, 271, 625
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	2 cut(s)	79, 418
Hpy188III	TCNNGA	5 cut(s)	106, 158, 203, 398, 644
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	2 cut(s)	92, 146
HpyCH4IV	ACGT	1 cut(s)	482
HpyCH4V	TGCA	3 cut(s)	4, 316, 569
HpyF10VI	GCNNNNNNNGC	2 cut(s)	190, 446
HpyF3I	CTNAG	1 cut(s)	645
HpySE526I	ACGT	1 cut(s)	482
Hsp92II	CATG	1 cut(s)	508
HspAI	GCGC	2 cut(s)	193, 500
Ksp22I	TGATCA	1 cut(s)	672
KspI	CCGCGG	1 cut(s)	49
Kzo9I	GATC	3 cut(s)	276, 368, 672
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	3 cut(s)	99, 193, 581
MaeI	CTAG	1 cut(s)	231
MaeII	ACGT	1 cut(s)	482
MaeIII	GTNAC	2 cut(s)	242, 613
MalI	GATC	3 cut(s)	278, 370, 674
MboI	GATC	3 cut(s)	276, 368, 672
MboII	GAAGA	7 cut(s)	63, 66, 94, 335, 345, 431, 539
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	3 cut(s)	252, 392, 542
MlyI	GAGTC	1 cut(s)	25
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	4 cut(s)	35, 102, 482, 592
MseI	TTAA	3 cut(s)	452, 537, 663
MspA1I	CMGCKG	2 cut(s)	48, 681
MspI	CCGG	1 cut(s)	172
MvnI	CGCG	3 cut(s)	48, 92, 167
MwoI	GCNNNNNNNGC	2 cut(s)	190, 446
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	3 cut(s)	276, 368, 672
NlaIII	CATG	1 cut(s)	508
NmuCI	GTSAC	2 cut(s)	242, 613
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	443
PflFI	GACNNNGTC	2 cut(s)	140, 605
PkrI	GCNGC	5 cut(s)	47, 114, 180, 183, 571
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Ppu21I	YACGTR	1 cut(s)	483
PspEI	GGTNACC	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	374
PspPI	GGNCC	2 cut(s)	9, 508
PsrI	GAACNNNNNNTAC	2 cut(s)	146, 178
PsuI	RGATCY	1 cut(s)	368
PsyI	GACNNNGTC	2 cut(s)	140, 605
PvuII	CAGCTG	1 cut(s)	681
RsaI	GTAC	4 cut(s)	99, 264, 485, 638
RsaNI	GTAC	4 cut(s)	98, 263, 484, 637
SacII	CCGCGG	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	452, 537, 663
SatI	GCNGC	5 cut(s)	46, 113, 179, 182, 570
Sau3AI	GATC	3 cut(s)	276, 368, 672
Sau96I	GGNCC	2 cut(s)	9, 508
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	1 cut(s)	25
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	8 cut(s)	213, 244, 268, 289, 474, 485, 655, 683
Sfr303I	CCGCGG	1 cut(s)	49
SgrBI	CCGCGG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	558
SmoI	CTYRAG	1 cut(s)	558
Sse9I	AATT	3 cut(s)	252, 392, 542
SsiI	CCGC	5 cut(s)	17, 46, 48, 178, 430
SspI	AATATT	1 cut(s)	535
SspMI	CTAG	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	504, 618
TaiI	ACGT	1 cut(s)	485
TaqI	TCGA	2 cut(s)	105, 135
TasI	AATT	3 cut(s)	252, 392, 542
TatI	WGTACW	2 cut(s)	97, 636
TauI	GCSGC	2 cut(s)	48, 181
TfiI	GAWTC	1 cut(s)	443
Tru1I	TTAA	3 cut(s)	452, 537, 663
Tru9I	TTAA	3 cut(s)	452, 537, 663
TscAI	CASTG	1 cut(s)	432
TseFI	GTSAC	2 cut(s)	242, 613
TseI	GCWGC	3 cut(s)	112, 181, 569
Tsp45I	GTSAC	2 cut(s)	242, 613
TspDTI	ATGAA	1 cut(s)	639
TspGWI	ACGGA	2 cut(s)	289, 369
TspRI	CASTG	1 cut(s)	432
Tth111I	GACNNNGTC	2 cut(s)	140, 605
VpaK11BI	GGWCC	1 cut(s)	9
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XspI	CTAG	1 cut(s)	231
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.