AT1G16840

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002459
Physical Location & Seq
Reverse (-)
5762694 .. 5764184
1491 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16840.2

Sequence Viewer

Length: 486 bp
ATGGCTCGATCTTTCTCTCGTTCACTTTCTCTATCCAAAGGCCGTTTCGCCGCCGCGTCATCCTCTCTCCTCCCTTCGTCGCACCTTGTTTCATTCCGATCTCAATCTTCCGATCGTCGGGGAGATCTGTACGAGATTGATACCTCCGCGGCTTCTCAATCGCCGTCGGATCCTTTAATACAGAAGCTAGAAGACGCCGTTCACCGGATTTTTGTGCGCCGAGCTCAGCCTGATTGGCTCCCTTTTGTTCCTGGTGCGTCTTATTGGGTCCCTCCTCCTGGATCTGGATCTCAGTCTCATGGAATCGCTCAGCTCGTTGTGAAACTCGCGAATCCGTTAACACACGAAGAATCTTTATCTACCAATTCTTCTCATGGATGGCCTTCCTCCGATTATTTCCTTAAAGGTGTTCAACCTCAATTGATGGAGACCAAGACCGAGACAACTTCAAATTCCGAGTCTCACTCTGAGGACGAGGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.6

Weight (kDa)

5.83

Isoelectric Point (pI)

69.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 56, 149, 329
AciI CCGC 4 cut(s) 51, 54, 147, 149
AclWI GGATC 4 cut(s) 164, 177, 289, 295
AcsI RAATTY 1 cut(s) 451
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 4 cut(s) 117, 204, 278, 284
AgsI TTSAA 2 cut(s) 413, 450
AjnI CCWGG 2 cut(s) 250, 277
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 3 cut(s) 187, 224, 313
AluI AGCT 3 cut(s) 187, 224, 313
Alw21I GWGCWC 1 cut(s) 226
Alw26I GTCTC 4 cut(s) 300, 422, 434, 465
AlwI GGATC 4 cut(s) 164, 177, 289, 295
AoxI GGCC 2 cut(s) 40, 380
ApoI RAATTY 1 cut(s) 451
ArsI GACNNNNNNTTYG 2 cut(s) 443, 475
AspLEI GCGC 1 cut(s) 219
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 1 cut(s) 194
AvaII GGWCC 1 cut(s) 268
BamHI GGATCC 1 cut(s) 169
BanII GRGCYC 1 cut(s) 226
BbsI GAAGAC 1 cut(s) 198
Bbv12I GWGCWC 1 cut(s) 226
BccI CCATC 2 cut(s) 372, 418
BceAI ACGGC 3 cut(s) 27, 148, 182
BciT130I CCWGG 2 cut(s) 252, 279
BcoDI GTCTC 4 cut(s) 300, 422, 434, 465
BfaI CTAG 1 cut(s) 188
BglI GCCNNNNNGGC 1 cut(s) 235
BglII AGATCT 1 cut(s) 124
BisI GCNGC 3 cut(s) 51, 54, 150
BlpI GCTNAGC 2 cut(s) 225, 309
BlsI GCNGC 3 cut(s) 52, 55, 151
Bme1390I CCNGG 2 cut(s) 252, 279
Bme18I GGWCC 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 4 cut(s) 171, 239, 269, 270
BmrFI CCNGG 2 cut(s) 252, 279
BpiI GAAGAC 1 cut(s) 198
BplI GAGNNNNNCTC 2 cut(s) 449, 481
Bpu1102I GCTNAGC 2 cut(s) 225, 309
BsaBI GATNNNNATC 2 cut(s) 103, 286
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 204
Bsc4I CCNNNNNNNGG 4 cut(s) 117, 204, 278, 284
Bse8I GATNNNNATC 2 cut(s) 103, 286
BseBI CCWGG 2 cut(s) 252, 279
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 59, 383
BseJI GATNNNNATC 2 cut(s) 103, 286
BseLI CCNNNNNNNGG 4 cut(s) 117, 204, 278, 284
BseMII CTCAG 4 cut(s) 239, 305, 323, 459
BseRI GAGGAG 2 cut(s) 59, 264
Bsh1236I CGCG 3 cut(s) 56, 149, 329
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 42, 382
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 1 cut(s) 226
BsiSI CCGG 1 cut(s) 205
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 4 cut(s) 117, 204, 278, 284
BsmAI GTCTC 4 cut(s) 300, 422, 434, 465
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 2 cut(s) 42, 382
Bso31I GGTCTC 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 226
Bsp143I GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
Bsp1720I GCTNAGC 2 cut(s) 225, 309
Bsp68I TCGCGA 1 cut(s) 329
BspACI CCGC 4 cut(s) 51, 54, 147, 149
BspANI GGCC 2 cut(s) 42, 382
BspCNI CTCAG 4 cut(s) 238, 304, 322, 460
BspFNI CGCG 3 cut(s) 56, 149, 329
BspLI GGNNCC 4 cut(s) 171, 239, 269, 270
BspPI GGATC 4 cut(s) 164, 177, 289, 295
BspTNI GGTCTC 1 cut(s) 422
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
BssNI GRCGYC 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 252, 279
BstACI GRCGYC 1 cut(s) 195
BstDEI CTNAG 4 cut(s) 225, 291, 309, 468
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 59, 383
BstFNI CGCG 3 cut(s) 56, 149, 329
BstHHI GCGC 1 cut(s) 219
BstKTI GATC 7 cut(s) 11, 101, 115, 127, 172, 284, 290
BstMAI GTCTC 4 cut(s) 300, 422, 434, 465
BstMBI GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
BstMCI CGRYCG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstNI CCWGG 2 cut(s) 252, 279
BstSCI CCNGG 2 cut(s) 250, 277
BstUI CGCG 3 cut(s) 56, 149, 329
BstV2I GAAGAC 1 cut(s) 198
BstX2I RGATCY 4 cut(s) 124, 169, 281, 287
BstYI RGATCY 4 cut(s) 124, 169, 281, 287
BsuRI GGCC 2 cut(s) 42, 382
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 59, 383
BtuMI TCGCGA 1 cut(s) 329
CfoI GCGC 1 cut(s) 219
Cfr13I GGNCC 1 cut(s) 268
Cfr42I CCGCGG 1 cut(s) 150
CseI GACGC 3 cut(s) 45, 203, 246
Csp6I GTAC 1 cut(s) 130
CviAII CATG 2 cut(s) 299, 374
CviJI RGCY 9 cut(s) 5, 42, 152, 187, 224, 229, 238, 313, 382
CviKI_1 RGCY 9 cut(s) 5, 42, 152, 187, 224, 229, 238, 313, 382
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 4 cut(s) 225, 291, 309, 468
DpnI GATC 7 cut(s) 10, 100, 114, 126, 171, 283, 289
DpnII GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
Ecl136II GAGCTC 1 cut(s) 224
Eco24I GRGCYC 1 cut(s) 226
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 224
EcoICRI GAGCTC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 250, 277
EcoT38I GRGCYC 1 cut(s) 226
FaeI CATG 2 cut(s) 302, 377
FaiI YATR 2 cut(s) 300, 375
FaqI GGGAC 1 cut(s) 254
FatI CATG 2 cut(s) 298, 373
Fnu4HI GCNGC 3 cut(s) 51, 54, 150
FokI GGATG 2 cut(s) 46, 390
FriOI GRGCYC 1 cut(s) 226
Fsp4HI GCNGC 3 cut(s) 51, 54, 150
FspBI CTAG 1 cut(s) 188
GlaI GCGC 1 cut(s) 218
GluI GCNGC 3 cut(s) 51, 54, 150
HaeIII GGCC 2 cut(s) 42, 382
HapII CCGG 1 cut(s) 205
HgaI GACGC 3 cut(s) 45, 203, 246
HhaI GCGC 1 cut(s) 219
Hin1I GRCGYC 1 cut(s) 195
Hin1II CATG 2 cut(s) 302, 377
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HincII GTYRAC 1 cut(s) 339
HindII GTYRAC 1 cut(s) 339
HinfI GANTC 4 cut(s) 303, 331, 350, 458
HpaI GTTAAC 1 cut(s) 339
HpaII CCGG 1 cut(s) 205
HphI GGTGA 1 cut(s) 194
Hpy166II GTNNAC 3 cut(s) 23, 202, 339
Hpy188I TCNGA 6 cut(s) 98, 112, 169, 391, 457, 469
Hpy188III TCNNGA 2 cut(s) 285, 328
Hpy8I GTNNAC 3 cut(s) 23, 202, 339
Hpy99I CGWCG 3 cut(s) 82, 120, 169
HpyAV CCTTC 2 cut(s) 84, 393
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
HpyF3I CTNAG 4 cut(s) 225, 291, 309, 468
Hsp92I GRCGYC 1 cut(s) 195
Hsp92II CATG 2 cut(s) 302, 377
HspAI GCGC 1 cut(s) 217
KflI GGGWCCC 1 cut(s) 268
KspAI GTTAAC 1 cut(s) 339
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
LmnI GCTCC 1 cut(s) 243
LpnPI CCDG 7 cut(s) 218, 237, 243, 264, 264, 270, 291
MaeI CTAG 1 cut(s) 188
MalI GATC 7 cut(s) 10, 100, 114, 126, 171, 283, 289
MboI GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
MboII GAAGA 4 cut(s) 99, 203, 359, 360
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 4 cut(s) 124, 169, 281, 287
MhlI GDGCHC 1 cut(s) 226
MluCI AATT 3 cut(s) 364, 419, 451
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 147
MnlI CCTC 9 cut(s) 73, 80, 154, 282, 285, 397, 426, 463, 469
MseI TTAA 3 cut(s) 176, 338, 402
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 205
MspR9I CCNGG 2 cut(s) 252, 279
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 2 cut(s) 252, 279
MvnI CGCG 3 cut(s) 56, 149, 329
MwoI GCNNNNNNNGC 1 cut(s) 235
NdeII GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
NlaIII CATG 2 cut(s) 302, 377
NlaIV GGNNCC 4 cut(s) 171, 239, 269, 270
NmeAIII GCCGAG 1 cut(s) 245
NruI TCGCGA 1 cut(s) 329
PcsI WCGNNNNNNNCGW 1 cut(s) 312
PfeI GAWTC 3 cut(s) 303, 331, 350
PfoI TCCNGGA 1 cut(s) 277
PkrI GCNGC 3 cut(s) 52, 55, 151
Ple19I CGATCG 1 cut(s) 115
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 268
Psp124BI GAGCTC 1 cut(s) 226
Psp5II RGGWCCY 1 cut(s) 268
Psp6I CCWGG 2 cut(s) 250, 277
PspGI CCWGG 2 cut(s) 250, 277
PspN4I GGNNCC 4 cut(s) 171, 239, 269, 270
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PsuI RGATCY 4 cut(s) 124, 169, 281, 287
PvuI CGATCG 1 cut(s) 115
RruI TCGCGA 1 cut(s) 329
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SacI GAGCTC 1 cut(s) 226
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 3 cut(s) 176, 338, 402
SatI GCNGC 3 cut(s) 51, 54, 150
Sau3AI GATC 7 cut(s) 8, 98, 112, 124, 169, 281, 287
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 252, 279
SduI GDGCHC 1 cut(s) 226
SetI ASST 7 cut(s) 87, 146, 189, 226, 315, 409, 418
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 268
Sse9I AATT 3 cut(s) 364, 419, 451
SsiI CCGC 4 cut(s) 51, 54, 147, 149
SspMI CTAG 1 cut(s) 188
SstI GAGCTC 1 cut(s) 226
StyD4I CCNGG 2 cut(s) 250, 277
TaqI TCGA 1 cut(s) 7
TaqII GACCGA 1 cut(s) 452
TasI AATT 3 cut(s) 364, 419, 451
TauI GCSGC 3 cut(s) 53, 56, 152
TfiI GAWTC 3 cut(s) 303, 331, 350
Tru1I TTAA 3 cut(s) 176, 338, 402
Tru9I TTAA 3 cut(s) 176, 338, 402
TspDTI ATGAA 1 cut(s) 81
TspGWI ACGGA 1 cut(s) 324
VpaK11BI GGWCC 1 cut(s) 268
XapI RAATTY 1 cut(s) 451
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.