RLG00000020429

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002459
Physical Location & Seq
Reverse (-)
64894887 .. 64896547
1661 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020429

Sequence Viewer

Length: 552 bp
ATGGCAAGGTCTCTCTCCCAAACCCTGACCCTAACCCGCCACCTCTCCCCCAAAACGTCGTCGTCTTTCATAACCCTCCGCGCCCAATCCAACCTCCCCTTCCACCATGACCAATCCGATCCCGCCGCCGCCGACTCCGTCGATCCCCTCCTCCGCAAGCTGGAGGACGCCATCCACCACATCATCGTCCGCAAGTCCGCCCCCGATTGGCTCCCCTTCGTCCCCGGCGCCTCCTACTGGGTCCCGCCGCCGCGGTCGAGATCCCACGGCCTCGCCCAGCTCGTCGAGAAGCTCGCCAATCCCTTGACGGAGGAGGAGTCCATGTCCATGACCACCGTTCGCGGCTGGCCTTCCTCCGCTTATTTCATTCAAGGTTCACCTCCACTGATGGAGGTCTTTGTTCCGAAATCTGATAACGTGGAGCAAAGGTTGGATGTGGCATCTGAGGCTAGTCTTGTATATTTCATGTTGGATGAAAGCTGTATTGATGAAAGGCATTTTGTCAAGGTGAAGAGCTGTACAGATGCAACCTGGTTAGTTGAGATGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.53

Weight (kDa)

5.62

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 227
AccII CGCG 3 cut(s) 81, 253, 342
AclWI GGATC 3 cut(s) 113, 137, 255
AcyI GRCGYC 2 cut(s) 168, 228
AfaI GTAC 1 cut(s) 520
AfiI CCNNNNNNNGG 3 cut(s) 160, 207, 237
AgsI TTSAA 1 cut(s) 371
AjnI CCWGG 1 cut(s) 530
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 5 cut(s) 160, 280, 292, 480, 516
AluI AGCT 5 cut(s) 160, 280, 292, 480, 516
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 3 cut(s) 113, 137, 255
AoxI GGCC 2 cut(s) 268, 347
AspLEI GCGC 2 cut(s) 83, 230
AspS9I GGNCC 1 cut(s) 241
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 2 cut(s) 369, 520
AvaII GGWCC 1 cut(s) 241
BanI GGYRCC 1 cut(s) 227
BccI CCATC 3 cut(s) 179, 382, 538
BceAI ACGGC 1 cut(s) 283
BciT130I CCWGG 1 cut(s) 532
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 231
BisI GCNGC 5 cut(s) 126, 129, 248, 251, 343
BlsI GCNGC 5 cut(s) 127, 130, 249, 252, 344
Bme1390I CCNGG 2 cut(s) 225, 532
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 4 cut(s) 212, 229, 242, 243
BmrFI CCNGG 2 cut(s) 225, 532
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 2 cut(s) 449, 514
BmuI ACTGGG 1 cut(s) 247
BpmI CTGGAG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 2 cut(s) 168, 228
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 223, 251, 265
BsaXI ACNNNNNCTCC 6 cut(s) 302, 308, 332, 338, 413, 443
Bsc4I CCNNNNNNNGG 3 cut(s) 160, 207, 237
Bse1I ACTGG 1 cut(s) 242
BseBI CCWGG 1 cut(s) 532
BseDI CCNNGG 3 cut(s) 223, 251, 265
BseGI GGATG 3 cut(s) 171, 439, 478
BseLI CCNNNNNNNGG 3 cut(s) 160, 207, 237
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 3 cut(s) 140, 326, 329
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 3 cut(s) 81, 253, 342
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 270, 349
BshNI GGYRCC 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 206, 227
BslI CCNNNNNNNGG 3 cut(s) 160, 207, 237
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 206, 227
BsnI GGCC 2 cut(s) 270, 349
Bso31I GGTCTC 1 cut(s) 15
Bsp1407I TGTACA 1 cut(s) 518
Bsp143I GATC 3 cut(s) 118, 142, 260
BspANI GGCC 2 cut(s) 270, 349
BspCNI CTCAG 1 cut(s) 436
BspFNI CGCG 3 cut(s) 81, 253, 342
BspLI GGNNCC 4 cut(s) 212, 229, 242, 243
BspPI GGATC 3 cut(s) 113, 137, 255
BspQI GCTCTTC 1 cut(s) 506
BspT107I GGYRCC 1 cut(s) 227
BspTNI GGTCTC 1 cut(s) 15
BsrGI TGTACA 1 cut(s) 518
BsrI ACTGG 1 cut(s) 242
BssECI CCNNGG 3 cut(s) 223, 251, 265
BssMI GATC 3 cut(s) 118, 142, 260
BssNI GRCGYC 2 cut(s) 168, 228
Bst2UI CCWGG 1 cut(s) 532
Bst4CI ACNGT 1 cut(s) 337
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 2 cut(s) 168, 228
BstAUI TGTACA 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 158, 294, 347
BstDEI CTNAG 1 cut(s) 444
BstDSI CCRYGG 2 cut(s) 251, 265
BstF5I GGATG 3 cut(s) 171, 439, 478
BstFNI CGCG 3 cut(s) 81, 253, 342
BstH2I RGCGCY 1 cut(s) 231
BstHHI GCGC 2 cut(s) 83, 230
BstKTI GATC 3 cut(s) 121, 145, 263
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 118, 142, 260
BstMCI CGRYCG 1 cut(s) 257
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstNI CCWGG 1 cut(s) 532
BstSCI CCNGG 2 cut(s) 223, 530
BstUI CGCG 3 cut(s) 81, 253, 342
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
BsuRI GGCC 2 cut(s) 270, 349
BtgI CCRYGG 2 cut(s) 251, 265
BtsCI GGATG 3 cut(s) 171, 439, 478
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 158, 294, 347
CfoI GCGC 2 cut(s) 83, 230
Cfr13I GGNCC 1 cut(s) 241
Cfr42I CCGCGG 1 cut(s) 254
CseI GACGC 1 cut(s) 176
CsiI ACCWGGT 1 cut(s) 530
Csp6I GTAC 1 cut(s) 519
CviAII CATG 4 cut(s) 107, 322, 328, 466
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 1 cut(s) 444
DinI GGCGCC 1 cut(s) 229
DpnI GATC 3 cut(s) 120, 144, 262
DpnII GATC 3 cut(s) 118, 142, 260
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
EciI GGCGGA 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 530
EgeI GGCGCC 1 cut(s) 229
EheI GGCGCC 1 cut(s) 229
FaeI CATG 4 cut(s) 110, 325, 331, 469
FaiI YATR 6 cut(s) 71, 108, 323, 329, 460, 467
FaqI GGGAC 2 cut(s) 206, 227
FatI CATG 4 cut(s) 106, 321, 327, 465
FauI CCCGC 3 cut(s) 44, 130, 252
Fnu4HI GCNGC 5 cut(s) 126, 129, 248, 251, 343
FokI GGATG 3 cut(s) 158, 446, 485
Fsp4HI GCNGC 5 cut(s) 126, 129, 248, 251, 343
FspBI CTAG 1 cut(s) 450
GlaI GCGC 2 cut(s) 82, 229
GluI GCNGC 5 cut(s) 126, 129, 248, 251, 343
GsaI CCCAGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 182
HaeII RGCGCY 1 cut(s) 231
HaeIII GGCC 2 cut(s) 270, 349
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 176
HhaI GCGC 2 cut(s) 83, 230
Hin1I GRCGYC 2 cut(s) 168, 228
Hin1II CATG 4 cut(s) 110, 325, 331, 469
Hin6I GCGC 2 cut(s) 81, 228
HinP1I GCGC 2 cut(s) 81, 228
HinfI GANTC 2 cut(s) 134, 317
HpaII CCGG 1 cut(s) 225
HphI GGTGA 2 cut(s) 369, 520
Hpy166II GTNNAC 1 cut(s) 377
Hpy188I TCNGA 4 cut(s) 118, 405, 412, 445
Hpy188III TCNNGA 2 cut(s) 258, 286
Hpy8I GTNNAC 1 cut(s) 377
Hpy99I CGWCG 4 cut(s) 61, 64, 143, 287
HpyAV CCTTC 3 cut(s) 109, 226, 360
HpyCH4III ACNGT 1 cut(s) 337
HpyCH4IV ACGT 2 cut(s) 56, 417
HpyCH4V TGCA 1 cut(s) 527
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 1 cut(s) 444
HpySE526I ACGT 2 cut(s) 56, 417
Hsp92I GRCGYC 2 cut(s) 168, 228
Hsp92II CATG 4 cut(s) 110, 325, 331, 469
HspAI GCGC 2 cut(s) 81, 228
KasI GGCGCC 1 cut(s) 227
KflI GGGWCCC 1 cut(s) 241
KspI CCGCGG 1 cut(s) 254
Kzo9I GATC 3 cut(s) 118, 142, 260
LguI GCTCTTC 1 cut(s) 506
LmnI GCTCC 2 cut(s) 216, 421
LpnPI CCDG 8 cut(s) 38, 146, 223, 238, 290, 331, 517, 544
LweI GCATC 2 cut(s) 449, 514
MabI ACCWGGT 1 cut(s) 530
MaeI CTAG 1 cut(s) 450
MaeII ACGT 2 cut(s) 56, 417
MalI GATC 3 cut(s) 120, 144, 262
MboI GATC 3 cut(s) 118, 142, 260
MboII GAAGA 1 cut(s) 523
MflI RGATCY 1 cut(s) 260
Mly113I GGCGCC 1 cut(s) 228
MlyI GAGTC 2 cut(s) 128, 326
MmeI TCCRAC 3 cut(s) 114, 411, 450
MslI CAYNNNNRTG 1 cut(s) 326
MspA1I CMGCKG 1 cut(s) 253
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 2 cut(s) 225, 532
MvaI CCWGG 1 cut(s) 532
MvnI CGCG 3 cut(s) 81, 253, 342
MwoI GCNNNNNNNGC 1 cut(s) 446
NarI GGCGCC 1 cut(s) 228
NciI CCSGG 1 cut(s) 225
NdeII GATC 3 cut(s) 118, 142, 260
NlaIII CATG 4 cut(s) 110, 325, 331, 469
NlaIV GGNNCC 4 cut(s) 212, 229, 242, 243
PciSI GCTCTTC 1 cut(s) 506
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 5 cut(s) 127, 130, 249, 252, 344
PleI GAGTC 2 cut(s) 128, 325
PluTI GGCGCC 1 cut(s) 231
PpsI GAGTC 2 cut(s) 128, 325
PpuMI RGGWCCY 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 241
Psp6I CCWGG 1 cut(s) 530
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 530
PspN4I GGNNCC 4 cut(s) 212, 229, 242, 243
PspPI GGNCC 1 cut(s) 241
PspPPI RGGWCCY 1 cut(s) 241
PsuI RGATCY 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
RseI CAYNNNNRTG 1 cut(s) 326
SacII CCGCGG 1 cut(s) 254
SapI GCTCTTC 1 cut(s) 506
SatI GCNGC 5 cut(s) 126, 129, 248, 251, 343
Sau3AI GATC 3 cut(s) 118, 142, 260
Sau96I GGNCC 1 cut(s) 241
SchI GAGTC 2 cut(s) 128, 326
ScrFI CCNGG 2 cut(s) 225, 532
SexAI ACCWGGT 1 cut(s) 530
SfaNI GCATC 2 cut(s) 449, 514
SfoI GGCGCC 1 cut(s) 229
Sfr303I CCGCGG 1 cut(s) 254
SgrBI CCGCGG 1 cut(s) 254
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 326
SspDI GGCGCC 1 cut(s) 227
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 223, 530
TaaI ACNGT 1 cut(s) 337
TaiI ACGT 2 cut(s) 59, 420
TaqI TCGA 3 cut(s) 141, 257, 285
TatI WGTACW 1 cut(s) 518
TauI GCSGC 5 cut(s) 128, 131, 250, 253, 345
TscAI CASTG 1 cut(s) 390
TspDTI ATGAA 5 cut(s) 58, 355, 454, 489, 504
TspGWI ACGGA 2 cut(s) 127, 323
TspRI CASTG 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 241
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.