Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Reverse (-)

68542635 .. 68544856

Gene Structure 2222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG485400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGCAAGGTCTCTCTCCCAAACCCTGACCCTCACCCGCCACCTCTCCCCCAAAACGTCGTCGTCTTTCATAACCCTCCGCGCCCAATCCAACCTCCCCTTCCACCATGACCAATCCGATCCGTCCGCCGCCGACTCCTCCGCCACCGTCGATCCCCTCCTCCGCAAGCTCGAGGACGCCATCCACCGCATCATTGTCCGCAAGTCCGCCCCCGATTGGCTCCCCTTCGTCCCTGGCGCCTCCTACTGGGTCCCGCCGCCGCGGTCCAGATCCCACGGCCTCGCCCAGCTCGTCGAGAAGCTCGCCAATCCCATGACCGAGGAGGAGTCCATGTCCATGACCACCGTTCGCGGCTGGCCTTCCTCCGCTTATTTCATTCAAGGTTCACCTCCACTGATGGAGGCATTCGTTCCGAAATCTGCTAATGCGGAGCAAAGGTTGGATAGTGCCGATCGCAAGTCGGATAATGCACCCAATTCTGAGGAGGAGGAGGAAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.45

Weight (kDa)

5.52

Isoelectric Point (pI)

73.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccII	CGCG	3 cut(s)	81, 262, 351
AclWI	GGATC	3 cut(s)	113, 146, 264
AcyI	GRCGYC	2 cut(s)	177, 237
AfiI	CCNNNNNNNGG	2 cut(s)	216, 246
AgsI	TTSAA	1 cut(s)	380
AjnI	CCWGG	1 cut(s)	232
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	3 cut(s)	169, 289, 301
AluI	AGCT	3 cut(s)	169, 289, 301
Alw26I	GTCTC	1 cut(s)	15
AlwI	GGATC	3 cut(s)	113, 146, 264
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	2 cut(s)	277, 356
AspLEI	GCGC	2 cut(s)	83, 239
AspS9I	GGNCC	2 cut(s)	250, 264
AsuHPI	GGTGA	2 cut(s)	25, 378
AvaI	CYCGRG	1 cut(s)	170
AvaII	GGWCC	2 cut(s)	250, 264
BanI	GGYRCC	1 cut(s)	236
BccI	CCATC	2 cut(s)	188, 391
BceAI	ACGGC	1 cut(s)	292
BciT130I	CCWGG	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	240
BisI	GCNGC	4 cut(s)	129, 257, 260, 352
BlsI	GCNGC	4 cut(s)	130, 258, 261, 353
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	2 cut(s)	250, 264
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	2 cut(s)	250, 264
BmiI	GGNNCC	4 cut(s)	221, 238, 251, 252
BmrFI	CCNGG	1 cut(s)	234
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	256
BsaHI	GRCGYC	2 cut(s)	177, 237
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	4 cut(s)	232, 260, 274, 318
BsaXI	ACNNNNNCTCC	4 cut(s)	317, 347, 422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 246
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	234
BseDI	CCNNGG	4 cut(s)	232, 260, 274, 318
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	216, 246
BseMII	CTCAG	1 cut(s)	471
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	7 cut(s)	127, 149, 335, 338, 497, 500, 503
BseYI	CCCAGC	1 cut(s)	285
Bsh1236I	CGCG	3 cut(s)	81, 262, 351
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	279, 358
BshNI	GGYRCC	1 cut(s)	236
BsiEI	CGRYCG	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	170
BslFI	GGGAC	2 cut(s)	215, 236
BslI	CCNNNNNNNGG	2 cut(s)	216, 246
BsmAI	GTCTC	1 cut(s)	15
BsmFI	GGGAC	2 cut(s)	215, 236
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	2 cut(s)	279, 358
Bso31I	GGTCTC	1 cut(s)	15
BsoBI	CYCGRG	1 cut(s)	170
Bsp143I	GATC	4 cut(s)	118, 151, 269, 451
BspANI	GGCC	2 cut(s)	279, 358
BspCNI	CTCAG	1 cut(s)	472
BspFNI	CGCG	3 cut(s)	81, 262, 351
BspLI	GGNNCC	4 cut(s)	221, 238, 251, 252
BspPI	GGATC	3 cut(s)	113, 146, 264
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	232, 260, 274, 318
BssMI	GATC	4 cut(s)	118, 151, 269, 451
BssNI	GRCGYC	2 cut(s)	177, 237
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	148, 346
BstACI	GRCGYC	2 cut(s)	177, 237
BstC8I	GCNNGC	3 cut(s)	167, 303, 356
BstDEI	CTNAG	1 cut(s)	480
BstDSI	CCRYGG	2 cut(s)	260, 274
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	3 cut(s)	81, 262, 351
BstH2I	RGCGCY	1 cut(s)	240
BstHHI	GCGC	2 cut(s)	83, 239
BstKTI	GATC	4 cut(s)	121, 154, 272, 454
BstMAI	GTCTC	1 cut(s)	15
BstMBI	GATC	4 cut(s)	118, 151, 269, 451
BstMCI	CGRYCG	1 cut(s)	454
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstUI	CGCG	3 cut(s)	81, 262, 351
BstX2I	RGATCY	1 cut(s)	269
BstYI	RGATCY	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	279, 358
BtgI	CCRYGG	2 cut(s)	260, 274
BtsCI	GGATG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	392
Cac8I	GCNNGC	3 cut(s)	167, 303, 356
CfoI	GCGC	2 cut(s)	83, 239
Cfr13I	GGNCC	2 cut(s)	250, 264
Cfr42I	CCGCGG	1 cut(s)	263
CseI	GACGC	1 cut(s)	185
CviAII	CATG	4 cut(s)	107, 313, 331, 337
CviJI	RGCY	7 cut(s)	169, 220, 279, 289, 301, 354, 358
CviKI_1	RGCY	7 cut(s)	169, 220, 279, 289, 301, 354, 358
DdeI	CTNAG	1 cut(s)	480
DinI	GGCGCC	1 cut(s)	238
DpnI	GATC	4 cut(s)	120, 153, 271, 453
DpnII	GATC	4 cut(s)	118, 151, 269, 451
EciI	GGCGGA	3 cut(s)	115, 130, 196
Eco31I	GGTCTC	1 cut(s)	15
Eco47I	GGWCC	2 cut(s)	250, 264
Eco88I	CYCGRG	1 cut(s)	170
EcoO109I	RGGNCCY	1 cut(s)	250
EcoRII	CCWGG	1 cut(s)	232
EgeI	GGCGCC	1 cut(s)	238
EheI	GGCGCC	1 cut(s)	238
FaeI	CATG	4 cut(s)	110, 316, 334, 340
FaiI	YATR	5 cut(s)	71, 108, 314, 332, 338
FaqI	GGGAC	2 cut(s)	215, 236
FatI	CATG	4 cut(s)	106, 312, 330, 336
FauI	CCCGC	2 cut(s)	44, 261
Fnu4HI	GCNGC	4 cut(s)	129, 257, 260, 352
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	129, 257, 260, 352
GlaI	GCGC	2 cut(s)	82, 238
GluI	GCNGC	4 cut(s)	129, 257, 260, 352
GsaI	CCCAGC	1 cut(s)	289
HaeII	RGCGCY	1 cut(s)	240
HaeIII	GGCC	2 cut(s)	279, 358
HgaI	GACGC	1 cut(s)	185
HhaI	GCGC	2 cut(s)	83, 239
Hin1I	GRCGYC	2 cut(s)	177, 237
Hin1II	CATG	4 cut(s)	110, 316, 334, 340
Hin6I	GCGC	2 cut(s)	81, 237
HinP1I	GCGC	2 cut(s)	81, 237
HinfI	GANTC	2 cut(s)	134, 326
HphI	GGTGA	2 cut(s)	25, 378
Hpy166II	GTNNAC	1 cut(s)	386
Hpy188I	TCNGA	4 cut(s)	118, 414, 463, 481
Hpy188III	TCNNGA	2 cut(s)	267, 295
Hpy8I	GTNNAC	1 cut(s)	386
Hpy99I	CGWCG	4 cut(s)	61, 64, 152, 296
HpyAV	CCTTC	4 cut(s)	109, 235, 369, 491
HpyCH4III	ACNGT	2 cut(s)	148, 346
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	1 cut(s)	470
HpyF3I	CTNAG	1 cut(s)	480
HpySE526I	ACGT	1 cut(s)	56
Hsp92I	GRCGYC	2 cut(s)	177, 237
Hsp92II	CATG	4 cut(s)	110, 316, 334, 340
HspAI	GCGC	2 cut(s)	81, 237
KasI	GGCGCC	1 cut(s)	236
KflI	GGGWCCC	1 cut(s)	250
KspI	CCGCGG	1 cut(s)	263
Kzo9I	GATC	4 cut(s)	118, 151, 269, 451
LmnI	GCTCC	2 cut(s)	225, 430
LpnPI	CCDG	7 cut(s)	38, 219, 232, 246, 280, 299, 340
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	56
MalI	GATC	4 cut(s)	120, 153, 271, 453
MboI	GATC	4 cut(s)	118, 151, 269, 451
MflI	RGATCY	1 cut(s)	269
MluCI	AATT	1 cut(s)	475
Mly113I	GGCGCC	1 cut(s)	237
MlyI	GAGTC	2 cut(s)	128, 335
MmeI	TCCRAC	3 cut(s)	114, 420, 441
MslI	CAYNNNNRTG	1 cut(s)	335
MspA1I	CMGCKG	1 cut(s)	262
MspR9I	CCNGG	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	234
MvnI	CGCG	3 cut(s)	81, 262, 351
NarI	GGCGCC	1 cut(s)	237
NdeII	GATC	4 cut(s)	118, 151, 269, 451
NlaIII	CATG	4 cut(s)	110, 316, 334, 340
NlaIV	GGNNCC	4 cut(s)	221, 238, 251, 252
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	1 cut(s)	288
PctI	GAATGC	1 cut(s)	404
PkrI	GCNGC	4 cut(s)	130, 258, 261, 353
Ple19I	CGATCG	1 cut(s)	454
PleI	GAGTC	2 cut(s)	128, 334
PluTI	GGCGCC	1 cut(s)	240
PpsI	GAGTC	2 cut(s)	128, 334
PpuMI	RGGWCCY	1 cut(s)	250
Psp5II	RGGWCCY	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	232
PspFI	CCCAGC	1 cut(s)	285
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	4 cut(s)	221, 238, 251, 252
PspPI	GGNCC	2 cut(s)	250, 264
PspPPI	RGGWCCY	1 cut(s)	250
PspXI	VCTCGAGB	1 cut(s)	170
PsuI	RGATCY	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	454
RseI	CAYNNNNRTG	1 cut(s)	335
SacII	CCGCGG	1 cut(s)	263
SatI	GCNGC	4 cut(s)	129, 257, 260, 352
Sau3AI	GATC	4 cut(s)	118, 151, 269, 451
Sau96I	GGNCC	2 cut(s)	250, 264
SchI	GAGTC	2 cut(s)	128, 335
ScrFI	CCNGG	1 cut(s)	234
SfaNI	GCATC	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	170
Sfr303I	CCGCGG	1 cut(s)	263
SgrBI	CCGCGG	1 cut(s)	263
SinI	GGWCC	2 cut(s)	250, 264
SlaI	CTCGAG	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	475
SspDI	GGCGCC	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	148, 346
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	150, 171, 294
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	1 cut(s)	475
TauI	GCSGC	4 cut(s)	131, 259, 262, 354
TscAI	CASTG	1 cut(s)	399
TspDTI	ATGAA	2 cut(s)	58, 364
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	399
VpaK11BI	GGWCC	2 cut(s)	250, 264
XhoI	CTCGAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.