Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Reverse (-)

13701440 .. 13702687

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g15690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGTCTTGGGTGTTCGAGAATCCACCAATATAACTCCCCTCGTCCCTCCCTCCACTCTCTCGCACCATCTACACTACCACTCTCTCTTTCTCGCGTACACACACAAAAGACTAACGCGCCTAAATTCTCTCTCTTTATTTTCCTCTTATCCAAACACCCCCCTCAAAATCTCCCATCTCTCTCTGTCTCTAGCAATTCCGTCATCAATGGCAAGGTCGTCGATTTCTCAAACCCTTACCTTAACCCGCCACCTCTCGCCCAAATCATCGCCGTCCTCCTCCCGCCTCATAACCCTGCGCGCCCAATCCACCCTCCCTTTTCACCATGATCCACCAACCGATTCCTCCGCCGACTCGCCTTCTGATCCCCTTCTGCGCAAGCTCGAGGACGCCATCCACCGGATCATCGTCCGCCGATCCGCGCCCGATTGGCTCCCTTTTTTGCCCGGCGCTTCCTACTGGGTCCCTCCTCCACGGTCGAGATCGCACGGCCTGGCTCAGCTGGTCGATAAGTTGGCCAACCCTTTGAGTGAGGAAGAGACCATGTCTATGAGCACCGTTAGAGGGTGGCCTTCTTCTGCTTATTTTATCGAAGGTACATCTCCACAACTGATGGAGCCTGTGGTTGTGGTTCAGAGTTCTGATGATGTGTCCAATCCCCAACCGACGGAGACCGTGGATCAAATTTCTAACAATGTGTCCAAGTCCGAGGATGAGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.94

Weight (kDa)

9.69

Isoelectric Point (pI)

75.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	410
AccII	CGCG	4 cut(s)	128, 151, 333, 455
AciI	CCGC	5 cut(s)	280, 316, 381, 445, 453
AclWI	GGATC	5 cut(s)	356, 392, 443, 444, 720
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	2 cut(s)	157, 717
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	131, 631
AfiI	CCNNNNNNNGG	3 cut(s)	432, 597, 700
AjnI	CCWGG	1 cut(s)	525
AluBI	AGCT	2 cut(s)	415, 535
AluI	AGCT	2 cut(s)	415, 535
Alw21I	GWGCWC	1 cut(s)	590
Alw26I	GTCTC	3 cut(s)	225, 566, 698
AlwI	GGATC	5 cut(s)	356, 392, 443, 444, 720
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	3 cut(s)	523, 549, 602
ApoI	RAATTY	2 cut(s)	157, 717
AspLEI	GCGC	6 cut(s)	153, 333, 335, 411, 457, 485
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	1 cut(s)	480
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	496
BalI	TGGCCA	1 cut(s)	551
Bbv12I	GWGCWC	1 cut(s)	590
BccI	CCATC	4 cut(s)	108, 216, 434, 640
BceAI	ACGGC	2 cut(s)	289, 538
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	527
BcnI	CCSGG	1 cut(s)	480
BcoDI	GTCTC	3 cut(s)	225, 566, 698
BfaI	CTAG	1 cut(s)	224
BfoI	RGCGCY	1 cut(s)	486
BglI	GCCNNNNNGGC	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	531
Bme1390I	CCNGG	2 cut(s)	480, 527
Bme18I	GGWCC	1 cut(s)	496
BmeT110I	CYCGRG	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	4 cut(s)	467, 497, 498, 651
BmrFI	CCNGG	2 cut(s)	480, 527
BmrI	ACTGGG	1 cut(s)	502
BmuI	ACTGGG	1 cut(s)	502
Bpu1102I	GCTNAGC	1 cut(s)	531
BpuMI	CCSGG	1 cut(s)	480
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	2 cut(s)	566, 698
BsaJI	CCNNGG	3 cut(s)	506, 708, 741
BsaWI	WCCGGW	1 cut(s)	432
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 597, 700
Bse1I	ACTGG	1 cut(s)	497
BseBI	CCWGG	1 cut(s)	527
BseDI	CCNNGG	3 cut(s)	506, 708, 741
BseGI	GGATG	2 cut(s)	426, 751
BseLI	CCNNNNNNNGG	3 cut(s)	432, 597, 700
BseMII	CTCAG	1 cut(s)	545
BseNI	ACTGG	1 cut(s)	497
BsePI	GCGCGC	1 cut(s)	331
BseRI	GAGGAG	2 cut(s)	301, 492
Bsh1236I	CGCG	4 cut(s)	128, 151, 333, 455
Bsh1285I	CGRYCG	1 cut(s)	512
BshFI	GGCC	3 cut(s)	525, 551, 604
BsiEI	CGRYCG	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	590
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	433, 480
BslFI	GGGAC	2 cut(s)	62, 482
BslI	CCNNNNNNNGG	3 cut(s)	432, 597, 700
BsmAI	GTCTC	3 cut(s)	225, 566, 698
BsmFI	GGGAC	2 cut(s)	62, 482
BsnI	GGCC	3 cut(s)	525, 551, 604
Bso31I	GGTCTC	2 cut(s)	566, 698
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	590
Bsp143I	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	5 cut(s)	280, 316, 381, 445, 453
BspANI	GGCC	3 cut(s)	525, 551, 604
BspCNI	CTCAG	1 cut(s)	544
BspFNI	CGCG	4 cut(s)	128, 151, 333, 455
BspLI	GGNNCC	4 cut(s)	467, 497, 498, 651
BspPI	GGATC	5 cut(s)	356, 392, 443, 444, 720
BspTNI	GGTCTC	2 cut(s)	566, 698
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	3 cut(s)	506, 708, 741
BssHII	GCGCGC	1 cut(s)	331
BssMI	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
BssNI	GRCGYC	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	3 cut(s)	510, 592, 709
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	423
BstC8I	GCNNGC	2 cut(s)	333, 413
BstDEI	CTNAG	1 cut(s)	531
BstDSI	CCRYGG	2 cut(s)	506, 708
BstF5I	GGATG	2 cut(s)	426, 751
BstFNI	CGCG	4 cut(s)	128, 151, 333, 455
BstH2I	RGCGCY	1 cut(s)	486
BstHHI	GCGC	6 cut(s)	153, 333, 335, 411, 457, 485
BstKTI	GATC	6 cut(s)	364, 400, 438, 452, 518, 715
BstMAI	GTCTC	3 cut(s)	225, 566, 698
BstMBI	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
BstMCI	CGRYCG	1 cut(s)	512
BstMWI	GCNNNNNNNGC	1 cut(s)	463
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	2 cut(s)	478, 525
BstUI	CGCG	4 cut(s)	128, 151, 333, 455
BsuRI	GGCC	3 cut(s)	525, 551, 604
BtgI	CCRYGG	2 cut(s)	506, 708
BtgZI	GCGATG	1 cut(s)	285
BtsCI	GGATG	2 cut(s)	426, 751
Cac8I	GCNNGC	2 cut(s)	333, 413
CfoI	GCGC	6 cut(s)	153, 333, 335, 411, 457, 485
Cfr13I	GGNCC	1 cut(s)	496
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	2 cut(s)	130, 630
CviAII	CATG	2 cut(s)	359, 577
CviJI	RGCY	8 cut(s)	415, 466, 525, 530, 535, 551, 604, 652
CviKI_1	RGCY	8 cut(s)	415, 466, 525, 530, 535, 551, 604, 652
CviQI	GTAC	2 cut(s)	130, 630
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	6 cut(s)	363, 399, 437, 451, 517, 714
DpnII	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	2 cut(s)	370, 434
Eco31I	GGTCTC	2 cut(s)	566, 698
Eco47I	GGWCC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	496
EcoRII	CCWGG	1 cut(s)	525
FaeI	CATG	2 cut(s)	362, 580
FaiI	YATR	5 cut(s)	65, 323, 360, 578, 584
FaqI	GGGAC	2 cut(s)	62, 482
FatI	CATG	2 cut(s)	358, 576
FauI	CCCGC	2 cut(s)	287, 323
FokI	GGATG	1 cut(s)	413
FspBI	CTAG	1 cut(s)	224
FspI	TGCGCA	1 cut(s)	410
GlaI	GCGC	6 cut(s)	152, 332, 334, 410, 456, 484
HaeII	RGCGCY	1 cut(s)	486
HaeIII	GGCC	3 cut(s)	525, 551, 604
HapII	CCGG	2 cut(s)	433, 480
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	6 cut(s)	153, 333, 335, 411, 457, 485
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	2 cut(s)	362, 580
Hin6I	GCGC	6 cut(s)	151, 331, 333, 409, 455, 483
HinP1I	GCGC	6 cut(s)	151, 331, 333, 409, 455, 483
HinfI	GANTC	3 cut(s)	53, 374, 386
HpaII	CCGG	2 cut(s)	433, 480
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	4 cut(s)	397, 669, 676, 742
Hpy188III	TCNNGA	2 cut(s)	50, 513
Hpy8I	GTNNAC	1 cut(s)	132
Hpy99I	CGWCG	2 cut(s)	256, 703
HpyAV	CCTTC	4 cut(s)	402, 413, 615, 620
HpyCH4III	ACNGT	3 cut(s)	510, 592, 709
HpyF10VI	GCNNNNNNNGC	1 cut(s)	463
HpyF3I	CTNAG	1 cut(s)	531
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	362, 580
HspAI	GCGC	6 cut(s)	151, 331, 333, 409, 455, 483
KflI	GGGWCCC	1 cut(s)	496
Kzo9I	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
LmnI	GCTCC	2 cut(s)	471, 649
LpnPI	CCDG	8 cut(s)	341, 446, 478, 493, 512, 521, 539, 666
MaeI	CTAG	1 cut(s)	224
MalI	GATC	6 cut(s)	363, 399, 437, 451, 517, 714
MboI	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
MboII	GAAGA	2 cut(s)	581, 600
MhlI	GDGCHC	1 cut(s)	590
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	3 cut(s)	157, 228, 717
MluNI	TGGCCA	1 cut(s)	551
MlyI	GAGTC	1 cut(s)	380
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	581
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	535
MspI	CCGG	2 cut(s)	433, 480
MspR9I	CCNGG	2 cut(s)	480, 527
MvaI	CCWGG	1 cut(s)	527
MvnI	CGCG	4 cut(s)	128, 151, 333, 455
MwoI	GCNNNNNNNGC	1 cut(s)	463
NciI	CCSGG	1 cut(s)	480
NdeII	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
NlaIII	CATG	2 cut(s)	362, 580
NlaIV	GGNNCC	4 cut(s)	467, 497, 498, 651
NsbI	TGCGCA	1 cut(s)	410
PaeR7I	CTCGAG	1 cut(s)	416
PauI	GCGCGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	53, 374
PflFI	GACNNNGTC	1 cut(s)	577
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	496
Psp5II	RGGWCCY	1 cut(s)	496
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspN4I	GGNNCC	4 cut(s)	467, 497, 498, 651
PspPI	GGNCC	1 cut(s)	496
PspPPI	RGGWCCY	1 cut(s)	496
PspXI	VCTCGAGB	1 cut(s)	416
PsyI	GACNNNGTC	1 cut(s)	577
PteI	GCGCGC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	535
RsaI	GTAC	2 cut(s)	131, 631
RsaNI	GTAC	2 cut(s)	130, 630
RseI	CAYNNNNRTG	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	275
Sau3AI	GATC	6 cut(s)	361, 397, 435, 449, 515, 712
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	2 cut(s)	480, 527
SduI	GDGCHC	1 cut(s)	590
SetI	ASST	7 cut(s)	39, 251, 275, 288, 417, 537, 631
Sfr274I	CTCGAG	1 cut(s)	416
SinI	GGWCC	1 cut(s)	496
SlaI	CTCGAG	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	3 cut(s)	157, 228, 717
SsiI	CCGC	5 cut(s)	280, 316, 381, 445, 453
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	478, 525
TaaI	ACNGT	3 cut(s)	510, 592, 709
TaqI	TCGA	6 cut(s)	49, 254, 417, 512, 540, 624
TasI	AATT	3 cut(s)	157, 228, 717
TfiI	GAWTC	2 cut(s)	53, 374
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TspGWI	ACGGA	2 cut(s)	222, 716
Tth111I	GACNNNGTC	1 cut(s)	577
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	2 cut(s)	157, 717
XhoI	CTCGAG	1 cut(s)	416
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.