Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

14740079 .. 14742471

Gene Structure 2393 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00344610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTGAGGACGATGGCGCGGGGACGGGTTTCAAGGCCGTGTTTCTAGAATCCTCCTACGAAAAAAGCAATGGTGGGGTGCGGTGGTGGTTTGCGGCACACGATTCTTACACGGTATCACCTCCTCCTCACCACGTGCCAGGCCAACACAAGAACCCACTGGGCAATTCCACCGCCCATAAACTCTATCCCTTCTCTCTTCGAGTCTTTTCCACCCCCAAAAACAATGGCCCGATTCTTCTTCACTCAGAGTCTCCAACTCCGCCACTCCCTCCTCCGGTGCCGGCCCCGGCCAGCCCATGCCCACCGGGCCTACTCGACCCGATCCGGGCAGCTCTTCGAGATCGAGATAAACCCCTCCGCCTCCACCTCATCGGAAGGCGAATCGGAGGCCCTCATGCTCAAGAAGCTAGACGACATCGTTCAGAGGATCCTCGTCCAGAAGGCCACCCCCGATTGGCTCCCCTTCGTTCCCGGCTCCTCCTTCTGGGTCCCGCCCCGACGGTCCCCCTTGGAGTCAACGACTTCGTCGGAAGATTGGCTGACAGGCTCTCCGATGAGGAGTCCCTCTCCGTCGCCACCGACCGAGGCTGGCCCTGCTCTGGTTTTTTCATCAATGGCAGTGAATCTGCGGAAACAAAGGAGGTTGGTGAGGAGGCAGAAGGATCAGGAGAACTAGAGGTGGTGGAGGTGGATGTAAAGGTTTTGACAGCCAACTTCGAGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.35

Weight (kDa)

5.82

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccII	CGCG	1 cut(s)	20
AciI	CCGC	8 cut(s)	20, 82, 95, 174, 263, 361, 495, 632
AclWI	GGATC	4 cut(s)	319, 425, 438, 673
AcoI	YGGCCR	1 cut(s)	291
AcvI	CACGTG	1 cut(s)	136
AdeI	CACNNNGTG	1 cut(s)	136
AfiI	CCNNNNNNNGG	5 cut(s)	277, 328, 457, 487, 602
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	2 cut(s)	335, 410
AluI	AGCT	2 cut(s)	335, 410
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	4 cut(s)	319, 425, 438, 673
AoxI	GGCC	9 cut(s)	36, 142, 229, 285, 291, 310, 391, 445, 593
ApeKI	GCWGC	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	20
AspS9I	GGNCC	7 cut(s)	230, 286, 310, 392, 491, 505, 594
AsuC2I	CCSGG	4 cut(s)	290, 309, 329, 475
AsuHPI	GGTGA	3 cut(s)	111, 122, 662
AvaII	GGWCC	2 cut(s)	491, 505
BamHI	GGATCC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	280
BbrPI	CACGTG	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	1 cut(s)	8
BceAI	ACGGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	141
BcnI	CCSGG	4 cut(s)	290, 309, 329, 475
BcoDI	GTCTC	1 cut(s)	258
BfaI	CTAG	3 cut(s)	47, 411, 677
BglI	GCCNNNNNGGC	1 cut(s)	309
BisI	GCNGC	2 cut(s)	96, 333
BlsI	GCNGC	2 cut(s)	97, 334
Bme1390I	CCNGG	5 cut(s)	141, 290, 309, 329, 475
Bme18I	GGWCC	2 cut(s)	491, 505
BmgT120I	GGNCC	7 cut(s)	230, 286, 310, 392, 491, 505, 594
BmiI	GGNNCC	8 cut(s)	282, 288, 432, 462, 479, 492, 493, 507
BmrFI	CCNGG	5 cut(s)	141, 290, 309, 329, 475
BmrI	ACTGGG	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	554, 586
BpuEI	CTTGAG	1 cut(s)	387
BpuMI	CCSGG	4 cut(s)	290, 309, 329, 475
BsaAI	YACGTR	1 cut(s)	136
BsaJI	CCNNGG	3 cut(s)	288, 511, 586
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	5 cut(s)	277, 328, 457, 487, 602
Bse118I	RCCGGY	1 cut(s)	283
Bse1I	ACTGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	288, 511, 586
BseGI	GGATG	2 cut(s)	700, 730
BseLI	CCNNNNNNNGG	5 cut(s)	277, 328, 457, 487, 602
BseMI	GCAATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	261
BseNI	ACTGG	1 cut(s)	165
BseRI	GAGGAG	6 cut(s)	114, 117, 264, 470, 575, 668
BseXI	GCAGC	1 cut(s)	344
Bsh1236I	CGCG	1 cut(s)	20
Bsh1285I	CGRYCG	1 cut(s)	586
BshFI	GGCC	9 cut(s)	38, 144, 231, 287, 293, 312, 393, 447, 595
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	586
BsiSI	CCGG	6 cut(s)	278, 284, 290, 308, 328, 475
BslFI	GGGAC	4 cut(s)	37, 477, 491, 550
BslI	CCNNNNNNNGG	5 cut(s)	277, 328, 457, 487, 602
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	4 cut(s)	37, 477, 491, 550
BsnI	GGCC	9 cut(s)	38, 144, 231, 287, 293, 312, 393, 447, 595
Bsp143I	GATC	4 cut(s)	324, 343, 430, 665
BspACI	CCGC	8 cut(s)	20, 82, 95, 174, 263, 361, 495, 632
BspANI	GGCC	9 cut(s)	38, 144, 231, 287, 293, 312, 393, 447, 595
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	8 cut(s)	282, 288, 432, 462, 479, 492, 493, 507
BspPI	GGATC	4 cut(s)	319, 425, 438, 673
BspQI	GCTCTTC	1 cut(s)	342
BspT107I	GGYRCC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	283
BssECI	CCNNGG	3 cut(s)	288, 511, 586
BssMI	GATC	4 cut(s)	324, 343, 430, 665
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	115, 505
Bst6I	CTCTTC	2 cut(s)	204, 342
BstBAI	YACGTR	1 cut(s)	136
BstC8I	GCNNGC	3 cut(s)	285, 295, 593
BstDEI	CTNAG	1 cut(s)	247
BstF5I	GGATG	2 cut(s)	700, 730
BstFNI	CGCG	1 cut(s)	20
BstHHI	GCGC	1 cut(s)	20
BstKTI	GATC	4 cut(s)	327, 346, 433, 668
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	4 cut(s)	324, 343, 430, 665
BstMCI	CGRYCG	1 cut(s)	586
BstMWI	GCNNNNNNNGC	3 cut(s)	309, 407, 597
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	5 cut(s)	139, 288, 307, 327, 473
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	430
BstYI	RGATCY	1 cut(s)	430
BsuRI	GGCC	9 cut(s)	38, 144, 231, 287, 293, 312, 393, 447, 595
BtsCI	GGATG	2 cut(s)	700, 730
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	158, 628
Cac8I	GCNNGC	3 cut(s)	285, 295, 593
CfoI	GCGC	1 cut(s)	20
Cfr10I	RCCGGY	1 cut(s)	283
Cfr13I	GGNCC	7 cut(s)	230, 286, 310, 392, 491, 505, 594
CviAII	CATG	2 cut(s)	300, 398
DdeI	CTNAG	1 cut(s)	247
DpnI	GATC	4 cut(s)	326, 345, 432, 667
DpnII	GATC	4 cut(s)	324, 343, 430, 665
DraIII	CACNNNGTG	1 cut(s)	136
EaeI	YGGCCR	1 cut(s)	291
Eam1104I	CTCTTC	2 cut(s)	204, 342
EarI	CTCTTC	2 cut(s)	204, 342
EciI	GGCGGA	2 cut(s)	252, 350
Eco130I	CCWWGG	1 cut(s)	511
Eco47I	GGWCC	2 cut(s)	491, 505
Eco72I	CACGTG	1 cut(s)	136
EcoO109I	RGGNCCY	2 cut(s)	392, 491
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
FaeI	CATG	2 cut(s)	303, 401
FaiI	YATR	3 cut(s)	180, 301, 399
FaqI	GGGAC	4 cut(s)	37, 477, 491, 550
FatI	CATG	2 cut(s)	299, 397
FauI	CCCGC	2 cut(s)	13, 502
Fnu4HI	GCNGC	2 cut(s)	96, 333
FokI	GGATG	1 cut(s)	707
Fsp4HI	GCNGC	2 cut(s)	96, 333
FspBI	CTAG	3 cut(s)	47, 411, 677
GlaI	GCGC	1 cut(s)	19
GluI	GCNGC	2 cut(s)	96, 333
HaeIII	GGCC	9 cut(s)	38, 144, 231, 287, 293, 312, 393, 447, 595
HapII	CCGG	6 cut(s)	278, 284, 290, 308, 328, 475
HhaI	GCGC	1 cut(s)	20
Hin1II	CATG	2 cut(s)	303, 401
Hin6I	GCGC	1 cut(s)	18
HinP1I	GCGC	1 cut(s)	18
HincII	GTYRAC	1 cut(s)	520
HindII	GTYRAC	1 cut(s)	520
HinfI	GANTC	9 cut(s)	50, 104, 204, 235, 251, 384, 516, 563, 626
HpaII	CCGG	6 cut(s)	278, 284, 290, 308, 328, 475
HphI	GGTGA	3 cut(s)	111, 122, 662
Hpy166II	GTNNAC	1 cut(s)	520
Hpy188I	TCNGA	6 cut(s)	250, 377, 389, 427, 533, 556
Hpy188III	TCNNGA	6 cut(s)	47, 341, 347, 404, 440, 669
Hpy8I	GTNNAC	1 cut(s)	520
Hpy99I	CGWCG	3 cut(s)	505, 533, 578
HpyAV	CCTTC	6 cut(s)	202, 372, 437, 476, 494, 656
HpyCH4III	ACNGT	2 cut(s)	115, 505
HpyCH4IV	ACGT	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	3 cut(s)	309, 407, 597
HpyF3I	CTNAG	1 cut(s)	247
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	303, 401
HspAI	GCGC	1 cut(s)	18
KflI	GGGWCCC	1 cut(s)	491
KroI	GCCGGC	1 cut(s)	283
KroNI	GCCGGC	1 cut(s)	285
Kzo9I	GATC	4 cut(s)	324, 343, 430, 665
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	466, 483
Lsp1109I	GCAGC	1 cut(s)	344
MaeI	CTAG	3 cut(s)	47, 411, 677
MaeII	ACGT	1 cut(s)	135
MalI	GATC	4 cut(s)	326, 345, 432, 667
MboI	GATC	4 cut(s)	324, 343, 430, 665
MboII	GAAGA	5 cut(s)	191, 230, 233, 329, 546
MflI	RGATCY	1 cut(s)	430
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	4 cut(s)	213, 260, 525, 572
MmeI	TCCRAC	2 cut(s)	281, 511
MroNI	GCCGGC	1 cut(s)	283
MspI	CCGG	6 cut(s)	278, 284, 290, 308, 328, 475
MspR9I	CCNGG	5 cut(s)	141, 290, 309, 329, 475
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	309, 407, 597
NaeI	GCCGGC	1 cut(s)	285
NciI	CCSGG	4 cut(s)	290, 309, 329, 475
NdeII	GATC	4 cut(s)	324, 343, 430, 665
NgoMIV	GCCGGC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	303, 401
NlaIV	GGNNCC	8 cut(s)	282, 288, 432, 462, 479, 492, 493, 507
PciSI	GCTCTTC	1 cut(s)	342
PdiI	GCCGGC	1 cut(s)	285
PfeI	GAWTC	5 cut(s)	50, 104, 235, 384, 626
PflFI	GACNNNGTC	1 cut(s)	527
PkrI	GCNGC	2 cut(s)	97, 334
PleI	GAGTC	4 cut(s)	212, 259, 524, 571
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	4 cut(s)	212, 259, 524, 571
Ppu21I	YACGTR	1 cut(s)	136
PpuMI	RGGWCCY	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	139
PspCI	CACGTG	1 cut(s)	136
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	8 cut(s)	282, 288, 432, 462, 479, 492, 493, 507
PspPI	GGNCC	7 cut(s)	230, 286, 310, 392, 491, 505, 594
PspPPI	RGGWCCY	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	430
PsyI	GACNNNGTC	1 cut(s)	527
SapI	GCTCTTC	1 cut(s)	342
SatI	GCNGC	2 cut(s)	96, 333
Sau3AI	GATC	4 cut(s)	324, 343, 430, 665
Sau96I	GGNCC	7 cut(s)	230, 286, 310, 392, 491, 505, 594
SchI	GAGTC	4 cut(s)	213, 260, 525, 572
ScrFI	CCNGG	5 cut(s)	141, 290, 309, 329, 475
SetI	ASST	9 cut(s)	124, 138, 337, 372, 412, 648, 684, 693, 705
SinI	GGWCC	2 cut(s)	491, 505
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	8 cut(s)	20, 82, 95, 174, 263, 361, 495, 632
SspMI	CTAG	3 cut(s)	47, 411, 677
StyD4I	CCNGG	5 cut(s)	139, 288, 307, 327, 473
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	2 cut(s)	115, 505
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	5 cut(s)	202, 318, 340, 346, 720
TaqII	GACCGA	1 cut(s)	600
TasI	AATT	1 cut(s)	166
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	5 cut(s)	50, 104, 235, 384, 626
TscAI	CASTG	2 cut(s)	165, 628
TseI	GCWGC	1 cut(s)	332
TspDTI	ATGAA	1 cut(s)	601
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	2 cut(s)	165, 628
Tth111I	GACNNNGTC	1 cut(s)	527
VpaK11BI	GGWCC	2 cut(s)	491, 505
XbaI	TCTAGA	1 cut(s)	46
XspI	CTAG	3 cut(s)	47, 411, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.