Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

27863621 .. 27866475

Gene Structure 2855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1249400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCCCGACTCCTCACTCAAACTCTCCATCTCCGTCAATCGCTCCTTCGCCGCCCGCTCCTCCCACCCTCCCTCACCCAAGCCCACCGCGCCCGCTCCTCCCGATCCGGCAAGGCCGAGTTAATCGAGATCGAGCTCGACCCCTCCACCTCGTCGTCGCCAAGTGATTCAGAGAAATTAATGCTCAAGAAACTAGACGACATCGTTCAGACCATCGTCGTCCAGAGGGCCACGCCCGATTGGCTCCCCTTTGTCCCCGGCTCCTCGTTCTGGGTCCCACCTCGACGCGCCCCGTTGAAAGTGACCGACTTGGTTGGCAAATTGGCTGACCAGCTCACGGATGAAGAAACCCTCTCTGTGGCCACTGATCGTGGATGGCCTTGCTCCCAATTTTTCATCAATGGCGGTACTGGATCTGCAGAAACAAGGGAAGTGGATACGGAGGCAGAAGGATCAACAGAAATAGAGGTGGAGGTGGAGGTAAAGGTTTTGACTGATTCACAGAAGCCCTCTCGCTGTGAGGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.48

Weight (kDa)

4.97

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	58, 96
AccII	CGCG	2 cut(s)	90, 288
AciI	CCGC	5 cut(s)	52, 56, 88, 94, 405
AclWI	GGATC	3 cut(s)	99, 421, 460
AcoI	YGGCCR	1 cut(s)	360
AfaI	GTAC	1 cut(s)	409
AfiI	CCNNNNNNNGG	3 cut(s)	270, 337, 358
AgsI	TTSAA	1 cut(s)	298
AluBI	AGCT	2 cut(s)	136, 334
AluI	AGCT	2 cut(s)	136, 334
Alw21I	GWGCWC	1 cut(s)	138
AlwI	GGATC	3 cut(s)	99, 421, 460
AoxI	GGCC	5 cut(s)	3, 114, 228, 360, 377
AseI	ATTAAT	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	92, 290
AspS9I	GGNCC	3 cut(s)	4, 228, 274
AsuC2I	CCSGG	1 cut(s)	258
AsuHPI	GGTGA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	274
BalI	TGGCCA	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	138
BccI	CCATC	3 cut(s)	36, 221, 369
BciVI	GTATCC	1 cut(s)	430
BcnI	CCSGG	1 cut(s)	258
BfaI	CTAG	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	417
BfuI	GTATCC	1 cut(s)	430
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	4, 228, 274
BmiI	GGNNCC	4 cut(s)	245, 262, 275, 276
BmrFI	CCNGG	1 cut(s)	258
BoxI	GACNNNNGTC	1 cut(s)	215
BpuEI	CTTGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	3 cut(s)	270, 337, 358
Bse1I	ACTGG	1 cut(s)	415
BseDI	CCNNGG	1 cut(s)	256
BseGI	GGATG	3 cut(s)	346, 380, 529
BseLI	CCNNNNNNNGG	3 cut(s)	270, 337, 358
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	3 cut(s)	50, 88, 253
Bsh1236I	CGCG	2 cut(s)	90, 288
BshFI	GGCC	5 cut(s)	5, 116, 230, 362, 379
BsiHKAI	GWGCWC	1 cut(s)	138
BsiSI	CCGG	2 cut(s)	108, 258
BslFI	GGGAC	2 cut(s)	239, 260
BslI	CCNNNNNNNGG	3 cut(s)	270, 337, 358
BsmFI	GGGAC	2 cut(s)	239, 260
BsnI	GGCC	5 cut(s)	5, 116, 230, 362, 379
Bsp1286I	GDGCHC	1 cut(s)	138
Bsp143I	GATC	5 cut(s)	104, 129, 367, 413, 452
BspACI	CCGC	5 cut(s)	52, 56, 88, 94, 405
BspANI	GGCC	5 cut(s)	5, 116, 230, 362, 379
BspFNI	CGCG	2 cut(s)	90, 288
BspLI	GGNNCC	4 cut(s)	245, 262, 275, 276
BspMAI	CTGCAG	1 cut(s)	421
BspPI	GGATC	3 cut(s)	99, 421, 460
BsrBI	CCGCTC	2 cut(s)	58, 96
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	5 cut(s)	104, 129, 367, 413, 452
BstC8I	GCNNGC	2 cut(s)	56, 94
BstF5I	GGATG	3 cut(s)	346, 380, 529
BstFNI	CGCG	2 cut(s)	90, 288
BstHHI	GCGC	2 cut(s)	92, 290
BstKTI	GATC	5 cut(s)	107, 132, 370, 416, 455
BstMBI	GATC	5 cut(s)	104, 129, 367, 413, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 241
BstPAI	GACNNNNGTC	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	256
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	2 cut(s)	90, 288
BstX2I	RGATCY	1 cut(s)	413
BstYI	RGATCY	1 cut(s)	413
BsuI	GTATCC	1 cut(s)	430
BsuRI	GGCC	5 cut(s)	5, 116, 230, 362, 379
BtsCI	GGATG	3 cut(s)	346, 380, 529
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	56, 94
CfoI	GCGC	2 cut(s)	92, 290
Cfr13I	GGNCC	3 cut(s)	4, 228, 274
CseI	GACGC	1 cut(s)	294
Csp6I	GTAC	1 cut(s)	408
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviQI	GTAC	1 cut(s)	408
DpnI	GATC	5 cut(s)	106, 131, 369, 415, 454
DpnII	GATC	5 cut(s)	104, 129, 367, 413, 452
EaeI	YGGCCR	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco47I	GGWCC	1 cut(s)	274
Eco53kI	GAGCTC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	136
EcoO109I	RGGNCCY	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	138
FaqI	GGGAC	2 cut(s)	239, 260
FauI	CCCGC	2 cut(s)	63, 101
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	2 cut(s)	353, 387
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	1 cut(s)	52
FspBI	CTAG	1 cut(s)	194
GlaI	GCGC	2 cut(s)	91, 289
GluI	GCNGC	1 cut(s)	52
HaeIII	GGCC	5 cut(s)	5, 116, 230, 362, 379
HapII	CCGG	2 cut(s)	108, 258
HgaI	GACGC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	92, 290
Hin6I	GCGC	2 cut(s)	90, 288
HinP1I	GCGC	2 cut(s)	90, 288
HinfI	GANTC	3 cut(s)	9, 167, 497
HpaII	CCGG	2 cut(s)	108, 258
HphI	GGTGA	1 cut(s)	67
Hpy188I	TCNGA	2 cut(s)	172, 210
Hpy188III	TCNNGA	4 cut(s)	102, 127, 187, 223
Hpy99I	CGWCG	4 cut(s)	157, 160, 221, 288
HpyAV	CCTTC	2 cut(s)	56, 443
HpyCH4V	TGCA	1 cut(s)	419
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 241
HspAI	GCGC	2 cut(s)	90, 288
KflI	GGGWCCC	1 cut(s)	274
Kzo9I	GATC	5 cut(s)	104, 129, 367, 413, 452
LmnI	GCTCC	6 cut(s)	48, 63, 101, 249, 266, 389
LpnPI	CCDG	6 cut(s)	121, 236, 256, 271, 344, 396
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	301
MalI	GATC	5 cut(s)	106, 131, 369, 415, 454
MbiI	CCGCTC	2 cut(s)	58, 96
MboI	GATC	5 cut(s)	104, 129, 367, 413, 452
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	138
MlsI	TGGCCA	1 cut(s)	362
MluCI	AATT	3 cut(s)	176, 320, 389
MluNI	TGGCCA	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	3
Mox20I	TGGCCA	1 cut(s)	362
MscI	TGGCCA	1 cut(s)	362
MseI	TTAA	3 cut(s)	122, 179, 529
Msp20I	TGGCCA	1 cut(s)	362
MspI	CCGG	2 cut(s)	108, 258
MspR9I	CCNGG	1 cut(s)	258
MvnI	CGCG	2 cut(s)	90, 288
MwoI	GCNNNNNNNGC	2 cut(s)	89, 241
NciI	CCSGG	1 cut(s)	258
NdeII	GATC	5 cut(s)	104, 129, 367, 413, 452
NlaIV	GGNNCC	4 cut(s)	245, 262, 275, 276
NmeAIII	GCCGAG	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	301
PfeI	GAWTC	2 cut(s)	167, 497
PkrI	GCNGC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PpuMI	RGGWCCY	1 cut(s)	274
PshAI	GACNNNNGTC	1 cut(s)	215
PshBI	ATTAAT	1 cut(s)	179
Psp124BI	GAGCTC	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	274
PspN4I	GGNNCC	4 cut(s)	245, 262, 275, 276
PspPI	GGNCC	3 cut(s)	4, 228, 274
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	421
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
SacI	GAGCTC	1 cut(s)	138
SaqAI	TTAA	3 cut(s)	122, 179, 529
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	5 cut(s)	104, 129, 367, 413, 452
Sau96I	GGNCC	3 cut(s)	4, 228, 274
SchI	GAGTC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	8 cut(s)	138, 152, 283, 336, 471, 477, 483, 489
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	3 cut(s)	176, 320, 389
SsiI	CCGC	5 cut(s)	52, 56, 88, 94, 405
SspMI	CTAG	1 cut(s)	194
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	256
TaqI	TCGA	4 cut(s)	126, 132, 138, 283
TaqII	GACCGA	1 cut(s)	320
TasI	AATT	3 cut(s)	176, 320, 389
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	2 cut(s)	167, 497
Tru1I	TTAA	3 cut(s)	122, 179, 529
Tru9I	TTAA	3 cut(s)	122, 179, 529
TscAI	CASTG	1 cut(s)	370
TseFI	GTSAC	1 cut(s)	301
Tsp45I	GTSAC	1 cut(s)	301
TspDTI	ATGAA	2 cut(s)	357, 385
TspGWI	ACGGA	3 cut(s)	23, 353, 455
TspRI	CASTG	1 cut(s)	370
VpaK11BI	GGWCC	1 cut(s)	274
VspI	ATTAAT	1 cut(s)	179
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.