Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

6240833 .. 6241960

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g08110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTACCTATATAACCCTCTCGCTCCTCCCTTCCCCCACCAGTCCACCGTCTCTCTCTCACACCATCCAGCACTCTCTTTCTCGCATGCACACCTAAATTTGCTCTTGATATTTTCCTCTTATCCAAACACCCCCTCAAAATCTCCCCTCTCTCTAGCAATTCTGTCATCAATGGCAAGGTCGATTTCTCAAACCCTTACCCTAACCCGCCACCTCTCCTCCAAATCATCGCCGCCCTCCTCCTCCCGCCTAATAAACCTGCGCGCCCAATCCACCCTCCCTTTTCACCATGACCCACCAACCGACTCCTCCGCCGACTCGCCTTCCGATCGCCTTCTGCGCAAGCTCGAGGACGCCATCCACCGGATCATCGTCCGCCGATCCGCGCCCGATTGGCTCCCCTTTCTGCCCGGCGCCTCCTACTGGGTCCCTCCCCCACGGTCGAGATCGCACGGCCTGGCTCAGCTGGTCGATAAGTTGGCTAACCCTCTGACTGAGGAGGAGACCATGTCTATGACCACTGTTAGAGGATGGCCTTCTTCTGCTTATTTTATCGAAGGTACATCTCCACAACTGATGGAGCCTGTGATTGTGGTTCAGAGTTCTGATGATGTGCCCAATCCCCAACCGACAGAGACCGGGGATCAAAGTTCTGACAATGTGTCCAAGTCTGAGGATGAGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

230

Amino Acids

25.17

Weight (kDa)

6.03

Isoelectric Point (pI)

81.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	413
AccII	CGCG	2 cut(s)	264, 386
AciI	CCGC	6 cut(s)	208, 233, 247, 312, 376, 384
AclWI	GGATC	3 cut(s)	374, 375, 651
AcsI	RAATTY	1 cut(s)	97
AcyI	GRCGYC	2 cut(s)	354, 414
AfaI	GTAC	2 cut(s)	5, 562
AfiI	CCNNNNNNNGG	2 cut(s)	363, 423
AhdI	GACNNNNNGTC	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	456
AluBI	AGCT	2 cut(s)	346, 466
AluI	AGCT	2 cut(s)	346, 466
Alw26I	GTCTC	3 cut(s)	55, 497, 629
AlwI	GGATC	3 cut(s)	374, 375, 651
Ama87I	CYCGRG	1 cut(s)	347
AoxI	GGCC	2 cut(s)	454, 533
ApoI	RAATTY	1 cut(s)	97
AspLEI	GCGC	5 cut(s)	264, 266, 342, 388, 416
AspS9I	GGNCC	1 cut(s)	427
AsuC2I	CCSGG	2 cut(s)	411, 640
AsuHPI	GGTGA	1 cut(s)	278
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	1 cut(s)	427
BaeGI	GKGCMC	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	413
BccI	CCATC	4 cut(s)	72, 365, 525, 571
BceAI	ACGGC	1 cut(s)	469
BciT130I	CCWGG	1 cut(s)	458
BcnI	CCSGG	2 cut(s)	411, 640
BcoDI	GTCTC	3 cut(s)	55, 497, 629
BfaI	CTAG	1 cut(s)	155
BfoI	RGCGCY	1 cut(s)	417
BfuAI	ACCTGC	1 cut(s)	267
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	1 cut(s)	233
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	234
Bme1390I	CCNGG	3 cut(s)	411, 458, 640
Bme18I	GGWCC	1 cut(s)	427
BmeRI	GACNNNNNGTC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	427
BmiI	GGNNCC	5 cut(s)	398, 415, 428, 429, 582
BmrFI	CCNGG	3 cut(s)	411, 458, 640
BmrI	ACTGGG	1 cut(s)	433
BmuI	ACTGGG	1 cut(s)	433
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuMI	CCSGG	2 cut(s)	411, 640
BsaHI	GRCGYC	2 cut(s)	354, 414
BsaI	GGTCTC	2 cut(s)	497, 629
BsaJI	CCNNGG	2 cut(s)	437, 639
BsaWI	WCCGGW	1 cut(s)	363
BsaXI	ACNNNNNCTCC	4 cut(s)	203, 233, 494, 524
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 423
Bse1I	ACTGG	2 cut(s)	40, 428
BseBI	CCWGG	1 cut(s)	458
BseDI	CCNNGG	2 cut(s)	437, 639
BseGI	GGATG	4 cut(s)	64, 357, 536, 682
BseLI	CCNNNNNNNGG	2 cut(s)	363, 423
BseMII	CTCAG	3 cut(s)	476, 486, 663
BseNI	ACTGG	2 cut(s)	40, 428
BsePI	GCGCGC	1 cut(s)	262
BseRI	GAGGAG	7 cut(s)	15, 208, 229, 232, 298, 512, 515
BseSI	GKGCMC	1 cut(s)	618
Bsh1236I	CGCG	2 cut(s)	264, 386
Bsh1285I	CGRYCG	2 cut(s)	331, 443
BshFI	GGCC	2 cut(s)	456, 535
BshNI	GGYRCC	1 cut(s)	413
BsiEI	CGRYCG	2 cut(s)	331, 443
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	364, 411, 639
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	363, 423
BsmAI	GTCTC	3 cut(s)	55, 497, 629
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	2 cut(s)	456, 535
Bso31I	GGTCTC	2 cut(s)	497, 629
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	5 cut(s)	328, 366, 380, 446, 643
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	6 cut(s)	208, 233, 247, 312, 376, 384
BspANI	GGCC	2 cut(s)	456, 535
BspCNI	CTCAG	3 cut(s)	475, 487, 664
BspFNI	CGCG	2 cut(s)	264, 386
BspLI	GGNNCC	5 cut(s)	398, 415, 428, 429, 582
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	374, 375, 651
BspT107I	GGYRCC	1 cut(s)	413
BspTNI	GGTCTC	2 cut(s)	497, 629
BsrI	ACTGG	2 cut(s)	40, 428
BssECI	CCNNGG	2 cut(s)	437, 639
BssHII	GCGCGC	1 cut(s)	262
BssMI	GATC	5 cut(s)	328, 366, 380, 446, 643
BssNI	GRCGYC	2 cut(s)	354, 414
Bst2UI	CCWGG	1 cut(s)	458
Bst4CI	ACNGT	3 cut(s)	49, 441, 523
BstACI	GRCGYC	2 cut(s)	354, 414
BstC8I	GCNNGC	3 cut(s)	87, 264, 344
BstDEI	CTNAG	3 cut(s)	462, 495, 672
BstDSI	CCRYGG	1 cut(s)	437
BstF5I	GGATG	4 cut(s)	64, 357, 536, 682
BstFNI	CGCG	2 cut(s)	264, 386
BstH2I	RGCGCY	1 cut(s)	417
BstHHI	GCGC	5 cut(s)	264, 266, 342, 388, 416
BstKTI	GATC	5 cut(s)	331, 369, 383, 449, 646
BstMAI	GTCTC	3 cut(s)	55, 497, 629
BstMBI	GATC	5 cut(s)	328, 366, 380, 446, 643
BstMCI	CGRYCG	2 cut(s)	331, 443
BstMWI	GCNNNNNNNGC	2 cut(s)	339, 394
BstNI	CCWGG	1 cut(s)	458
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	409, 456, 638
BstSLI	GKGCMC	1 cut(s)	618
BstUI	CGCG	2 cut(s)	264, 386
BsuRI	GGCC	2 cut(s)	456, 535
BtgI	CCRYGG	1 cut(s)	437
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	4 cut(s)	64, 357, 536, 682
BtsIMutI	CAGTG	1 cut(s)	519
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	87, 264, 344
CfoI	GCGC	5 cut(s)	264, 266, 342, 388, 416
Cfr13I	GGNCC	1 cut(s)	427
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	4, 561
CviAII	CATG	3 cut(s)	86, 290, 508
CviJI	RGCY	8 cut(s)	346, 397, 456, 461, 466, 482, 535, 583
CviKI_1	RGCY	8 cut(s)	346, 397, 456, 461, 466, 482, 535, 583
CviQI	GTAC	2 cut(s)	4, 561
DdeI	CTNAG	3 cut(s)	462, 495, 672
DinI	GGCGCC	1 cut(s)	415
DpnI	GATC	5 cut(s)	330, 368, 382, 448, 645
DpnII	GATC	5 cut(s)	328, 366, 380, 446, 643
DriI	GACNNNNNGTC	1 cut(s)	661
Eam1105I	GACNNNNNGTC	1 cut(s)	661
EciI	GGCGGA	2 cut(s)	301, 365
Eco31I	GGTCTC	2 cut(s)	497, 629
Eco47I	GGWCC	1 cut(s)	427
Eco88I	CYCGRG	1 cut(s)	347
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	456
EgeI	GGCGCC	1 cut(s)	415
EheI	GGCGCC	1 cut(s)	415
Esp3I	CGTCTC	1 cut(s)	55
FaeI	CATG	3 cut(s)	89, 293, 511
FaiI	YATR	6 cut(s)	10, 12, 87, 291, 509, 515
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	85, 289, 507
FauI	CCCGC	2 cut(s)	215, 254
Fnu4HI	GCNGC	1 cut(s)	233
FokI	GGATG	3 cut(s)	51, 344, 543
Fsp4HI	GCNGC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	155
FspI	TGCGCA	1 cut(s)	341
GlaI	GCGC	5 cut(s)	263, 265, 341, 387, 415
GluI	GCNGC	1 cut(s)	233
HaeII	RGCGCY	1 cut(s)	417
HaeIII	GGCC	2 cut(s)	456, 535
HapII	CCGG	3 cut(s)	364, 411, 639
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	5 cut(s)	264, 266, 342, 388, 416
Hin1I	GRCGYC	2 cut(s)	354, 414
Hin1II	CATG	3 cut(s)	89, 293, 511
Hin6I	GCGC	5 cut(s)	262, 264, 340, 386, 414
HinP1I	GCGC	5 cut(s)	262, 264, 340, 386, 414
HinfI	GANTC	2 cut(s)	305, 317
HpaII	CCGG	3 cut(s)	364, 411, 639
HphI	GGTGA	1 cut(s)	278
Hpy166II	GTNNAC	1 cut(s)	45
Hpy188I	TCNGA	6 cut(s)	328, 492, 600, 607, 655, 673
Hpy188III	TCNNGA	2 cut(s)	106, 444
Hpy8I	GTNNAC	1 cut(s)	45
HpyAV	CCTTC	5 cut(s)	40, 333, 344, 546, 551
HpyCH4III	ACNGT	3 cut(s)	49, 441, 523
HpyCH4V	TGCA	1 cut(s)	89
HpyF10VI	GCNNNNNNNGC	2 cut(s)	339, 394
HpyF3I	CTNAG	3 cut(s)	462, 495, 672
Hsp92I	GRCGYC	2 cut(s)	354, 414
Hsp92II	CATG	3 cut(s)	89, 293, 511
HspAI	GCGC	5 cut(s)	262, 264, 340, 386, 414
KasI	GGCGCC	1 cut(s)	413
KflI	GGGWCCC	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	328, 366, 380, 446, 643
LmnI	GCTCC	3 cut(s)	28, 402, 580
MaeI	CTAG	1 cut(s)	155
MalI	GATC	5 cut(s)	330, 368, 382, 448, 645
MboI	GATC	5 cut(s)	328, 366, 380, 446, 643
MboII	GAAGA	1 cut(s)	531
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	2 cut(s)	97, 159
Mly113I	GGCGCC	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	299, 311
MslI	CAYNNNNRTG	1 cut(s)	512
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	3 cut(s)	364, 411, 639
MspR9I	CCNGG	3 cut(s)	411, 458, 640
MvaI	CCWGG	1 cut(s)	458
MvnI	CGCG	2 cut(s)	264, 386
MwoI	GCNNNNNNNGC	2 cut(s)	339, 394
NarI	GGCGCC	1 cut(s)	414
NciI	CCSGG	2 cut(s)	411, 640
NdeII	GATC	5 cut(s)	328, 366, 380, 446, 643
NlaIII	CATG	3 cut(s)	89, 293, 511
NlaIV	GGNNCC	5 cut(s)	398, 415, 428, 429, 582
NsbI	TGCGCA	1 cut(s)	341
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PaeR7I	CTCGAG	1 cut(s)	347
PauI	GCGCGC	1 cut(s)	262
PflFI	GACNNNGTC	1 cut(s)	508
PkrI	GCNGC	1 cut(s)	234
Ple19I	CGATCG	1 cut(s)	331
PleI	GAGTC	2 cut(s)	299, 311
PluTI	GGCGCC	1 cut(s)	417
PpsI	GAGTC	2 cut(s)	299, 311
PpuMI	RGGWCCY	1 cut(s)	427
Psp5II	RGGWCCY	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	456
PspGI	CCWGG	1 cut(s)	456
PspN4I	GGNNCC	5 cut(s)	398, 415, 428, 429, 582
PspPI	GGNCC	1 cut(s)	427
PspPPI	RGGWCCY	1 cut(s)	427
PspXI	VCTCGAGB	1 cut(s)	347
PsyI	GACNNNGTC	1 cut(s)	508
PteI	GCGCGC	1 cut(s)	262
PvuI	CGATCG	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	466
RsaI	GTAC	2 cut(s)	5, 562
RsaNI	GTAC	2 cut(s)	4, 561
RseI	CAYNNNNRTG	1 cut(s)	512
SatI	GCNGC	1 cut(s)	233
Sau3AI	GATC	5 cut(s)	328, 366, 380, 446, 643
Sau96I	GGNCC	1 cut(s)	427
SchI	GAGTC	2 cut(s)	299, 311
ScrFI	CCNGG	3 cut(s)	411, 458, 640
SduI	GDGCHC	1 cut(s)	618
SetI	ASST	8 cut(s)	9, 96, 182, 216, 261, 348, 468, 562
SfoI	GGCGCC	1 cut(s)	415
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	1 cut(s)	427
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	512
SmlI	CTYRAG	1 cut(s)	347
SmoI	CTYRAG	1 cut(s)	347
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	97, 159
SsiI	CCGC	6 cut(s)	208, 233, 247, 312, 376, 384
SspDI	GGCGCC	1 cut(s)	413
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	3 cut(s)	409, 456, 638
TaaI	ACNGT	3 cut(s)	49, 441, 523
TaqI	TCGA	5 cut(s)	182, 348, 443, 471, 555
TasI	AATT	2 cut(s)	97, 159
TauI	GCSGC	1 cut(s)	235
TscAI	CASTG	1 cut(s)	526
TspRI	CASTG	1 cut(s)	526
Tth111I	GACNNNGTC	1 cut(s)	508
VpaK11BI	GGWCC	1 cut(s)	427
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	347
XspI	CTAG	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.