Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

29656430 .. 29658634

Gene Structure 2205 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78890.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCTCGATCTTTATCTCCTTCACTTTCTCTCTCTCGATACCGTTTCGCCGCAGCTTCTCTTCTTCTCCCTTCATCTCAAACCATTTTCATCCGATCTCAATCCTCCAATCGTCGGTCTAACTCTAACCATCTCGGAGTAATCTACGAGATTGATATCGCTGCGGATCCTCTTGTCAATAAGTTGGAAGATGCTGTCCACCGGATTATGGTACGCCGATCCGCACCTGATTGGCTCCCTTTTGTCCCCGGTGCTTCCTTTTGGGTTCCACCTCCTAGATCCCAGTCTCATGGGATCGCTAAGCTCGTTGAGAAGCTGGCCAATCCGATCTCTGATGAAGAATCTATTTCAATCTCATCGGTTCGAGGATGGCCTTGCTCTGATTACTTCATCAAAGGTGTAAAGCCTCAATCAGTTGAGACGGAGATGACTTCAAATACTGCATATCACTCCGAGGACGAGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.23

Weight (kDa)

6.42

Isoelectric Point (pI)

70.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	51, 164, 222
AclWI	GGATC	5 cut(s)	161, 174, 213, 273, 302
AcoI	YGGCCR	1 cut(s)	318
AfaI	GTAC	1 cut(s)	213
AfiI	CCNNNNNNNGG	2 cut(s)	114, 208
AgsI	TTSAA	2 cut(s)	351, 435
AluBI	AGCT	3 cut(s)	56, 304, 316
AluI	AGCT	3 cut(s)	56, 304, 316
Alw26I	GTCTC	2 cut(s)	291, 413
AlwI	GGATC	5 cut(s)	161, 174, 213, 273, 302
AoxI	GGCC	2 cut(s)	318, 371
ApeKI	GCWGC	2 cut(s)	53, 161
AsuC2I	CCSGG	1 cut(s)	249
BalI	TGGCCA	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	65, 148
BccI	CCATC	2 cut(s)	138, 363
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	291, 413
BfaI	CTAG	1 cut(s)	276
BisI	GCNGC	3 cut(s)	51, 54, 162
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	3 cut(s)	52, 55, 163
Bme1390I	CCNGG	1 cut(s)	249
BmiI	GGNNCC	3 cut(s)	168, 236, 267
BmrFI	CCNGG	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	277
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	249
BsaBI	GATNNNNATC	3 cut(s)	13, 100, 155
BsaJI	CCNNGG	2 cut(s)	247, 453
BsaWI	WCCGGW	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	2 cut(s)	114, 208
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	3 cut(s)	13, 100, 155
BseDI	CCNNGG	2 cut(s)	247, 453
BseGI	GGATG	2 cut(s)	90, 374
BseJI	GATNNNNATC	3 cut(s)	13, 100, 155
BseLI	CCNNNNNNNGG	2 cut(s)	114, 208
BseNI	ACTGG	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	65, 148
BshFI	GGCC	2 cut(s)	320, 373
BsiSI	CCGG	2 cut(s)	202, 249
BslFI	GGGAC	1 cut(s)	230
BslI	CCNNNNNNNGG	2 cut(s)	114, 208
BsmAI	GTCTC	2 cut(s)	291, 413
BsmBI	CGTCTC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	320, 373
Bsp143I	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
Bsp1720I	GCTNAGC	1 cut(s)	300
BspACI	CCGC	3 cut(s)	51, 164, 222
BspANI	GGCC	2 cut(s)	320, 373
BspLI	GGNNCC	3 cut(s)	168, 236, 267
BspPI	GGATC	5 cut(s)	161, 174, 213, 273, 302
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	247, 453
BssMI	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
Bst4CI	ACNGT	1 cut(s)	44
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	90, 374
BstKTI	GATC	7 cut(s)	11, 98, 169, 221, 281, 297, 330
BstMAI	GTCTC	2 cut(s)	291, 413
BstMBI	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
BstSCI	CCNGG	1 cut(s)	247
BstV1I	GCAGC	2 cut(s)	65, 148
BstX2I	RGATCY	2 cut(s)	166, 278
BstXI	CCANNNNNNTGG	1 cut(s)	290
BstYI	RGATCY	2 cut(s)	166, 278
BsuRI	GGCC	2 cut(s)	320, 373
BtsCI	GGATG	2 cut(s)	90, 374
Cac8I	GCNNGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	212
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	8 cut(s)	5, 56, 235, 304, 316, 320, 373, 406
CviKI_1	RGCY	8 cut(s)	5, 56, 235, 304, 316, 320, 373, 406
CviQI	GTAC	1 cut(s)	212
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	7 cut(s)	10, 97, 168, 220, 280, 296, 329
DpnII	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
EaeI	YGGCCR	1 cut(s)	318
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco32I	GATATC	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	413
FaeI	CATG	1 cut(s)	293
FaiI	YATR	3 cut(s)	209, 291, 445
FaqI	GGGAC	1 cut(s)	230
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	3 cut(s)	51, 54, 162
FokI	GGATG	2 cut(s)	77, 381
Fsp4HI	GCNGC	3 cut(s)	51, 54, 162
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	3 cut(s)	51, 54, 162
HaeIII	GGCC	2 cut(s)	320, 373
HapII	CCGG	2 cut(s)	202, 249
Hin1II	CATG	1 cut(s)	293
HinfI	GANTC	1 cut(s)	341
HpaII	CCGG	2 cut(s)	202, 249
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	6 cut(s)	95, 137, 327, 334, 382, 454
Hpy188III	TCNNGA	1 cut(s)	36
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	2 cut(s)	30, 81
HpyCH4III	ACNGT	1 cut(s)	44
HpyCH4V	TGCA	1 cut(s)	443
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	1 cut(s)	293
Kzo9I	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
LmnI	GCTCC	1 cut(s)	240
LpnPI	CCDG	5 cut(s)	215, 240, 262, 296, 302
Lsp1109I	GCAGC	2 cut(s)	65, 148
LweI	GCATC	1 cut(s)	181
MaeI	CTAG	1 cut(s)	276
MalI	GATC	7 cut(s)	10, 97, 168, 220, 280, 296, 329
MboI	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
MboII	GAAGA	4 cut(s)	53, 56, 200, 350
MflI	RGATCY	2 cut(s)	166, 278
MlsI	TGGCCA	1 cut(s)	320
MluNI	TGGCCA	1 cut(s)	320
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	7 cut(s)	115, 180, 282, 359, 417, 448, 454
Mox20I	TGGCCA	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	320
Msp20I	TGGCCA	1 cut(s)	320
MspI	CCGG	2 cut(s)	202, 249
MspR9I	CCNGG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	3 cut(s)	168, 236, 267
PcsI	WCGNNNNNNNCGW	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	52, 55, 163
PspN4I	GGNNCC	3 cut(s)	168, 236, 267
PsuI	RGATCY	2 cut(s)	166, 278
RsaI	GTAC	1 cut(s)	213
RsaNI	GTAC	1 cut(s)	212
SatI	GCNGC	3 cut(s)	51, 54, 162
Sau3AI	GATC	7 cut(s)	8, 95, 166, 218, 278, 294, 327
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	6 cut(s)	58, 229, 274, 306, 318, 400
SfaNI	GCATC	1 cut(s)	181
SsiI	CCGC	3 cut(s)	51, 164, 222
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	44
TaqI	TCGA	3 cut(s)	7, 37, 364
TaqII	GACCGA	1 cut(s)	105
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	1 cut(s)	341
TseI	GCWGC	2 cut(s)	53, 161
TspDTI	ATGAA	4 cut(s)	63, 79, 351, 379
TspGWI	ACGGA	1 cut(s)	437
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.