Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

6713345 .. 6715668

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g07330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCCCGATTCTTCACTCAGAGTCTCCAGCTCCGCCCCCATCTCGCCATCCGCTCCTTCTCGACCCGATCCGCCCAGCTCTTCGAGATCGAGATAAACCCCTCCACCTCCTCCTCCTCCTCCGAAGGCGAATCGGAAGCCCTCATGCTCAAGAAGCTCGACGACATCGTTCAGAGGATCCTCGTCCAGAAGGCCACCCCTGATTGGCTCCCCTTCGTTCCCGGCTCCTCGTTCTGGGTCCCACCTCGGCGATCGCCGTTGGGAGTTAACGGCTTCGTCGGAAGATTGGCCGACAAGCTCTCCGATGAGGAGTCCCTCTCCGTCGCCACCGACCGGGGCTGGCCCTGCTCTGATTATTTGATCAATGGCAGTGAATCAGTGGGAACAAAGGAGGTTGATGAGGATGCGGAAGGATCAGGAGAAGTAGAGGTGGTGGAGGTGGATTTGAAGGTTTTAACGACCAACTTCGAGGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.55

Weight (kDa)

4.5

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	54
AciI	CCGC	4 cut(s)	34, 52, 72, 407
AclWI	GGATC	4 cut(s)	63, 172, 185, 421
AcoI	YGGCCR	1 cut(s)	288
AfiI	CCNNNNNNNGG	3 cut(s)	204, 234, 333
AgsI	TTSAA	1 cut(s)	448
AluBI	AGCT	4 cut(s)	31, 79, 157, 298
AluI	AGCT	4 cut(s)	31, 79, 157, 298
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	4 cut(s)	63, 172, 185, 421
AoxI	GGCC	4 cut(s)	3, 192, 288, 341
AsiSI	GCGATCGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	4, 238, 342
AsuC2I	CCSGG	2 cut(s)	222, 335
AvaII	GGWCC	1 cut(s)	238
BamHI	GGATCC	1 cut(s)	177
BccI	CCATC	2 cut(s)	48, 56
BceAI	ACGGC	2 cut(s)	241, 286
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	2 cut(s)	222, 335
BcoDI	GTCTC	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	222, 335
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	3 cut(s)	4, 238, 342
BmiI	GGNNCC	5 cut(s)	179, 209, 226, 239, 240
BmrFI	CCNGG	2 cut(s)	222, 335
BmsI	GCATC	1 cut(s)	394
BplI	GAGNNNNNCTC	2 cut(s)	302, 334
BpmI	CTGGAG	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	134
BpuMI	CCSGG	2 cut(s)	222, 335
BsaJI	CCNNGG	2 cut(s)	245, 334
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 234, 333
BseDI	CCNNGG	2 cut(s)	245, 334
BseGI	GGATG	3 cut(s)	48, 409, 478
BseLI	CCNNNNNNNGG	3 cut(s)	204, 234, 333
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	6 cut(s)	100, 103, 106, 109, 217, 323
BseYI	CCCAGC	1 cut(s)	75
Bsh1285I	CGRYCG	2 cut(s)	254, 334
BshFI	GGCC	4 cut(s)	5, 194, 290, 343
BsiEI	CGRYCG	2 cut(s)	254, 334
BsiSI	CCGG	2 cut(s)	222, 334
BslFI	GGGAC	2 cut(s)	224, 298
BslI	CCNNNNNNNGG	3 cut(s)	204, 234, 333
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	224, 298
BsnI	GGCC	4 cut(s)	5, 194, 290, 343
Bsp143I	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
BspACI	CCGC	4 cut(s)	34, 52, 72, 407
BspANI	GGCC	4 cut(s)	5, 194, 290, 343
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	5 cut(s)	179, 209, 226, 239, 240
BspPI	GGATC	4 cut(s)	63, 172, 185, 421
BspQI	GCTCTTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	54
BssECI	CCNNGG	2 cut(s)	245, 334
BssMI	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
Bst6I	CTCTTC	1 cut(s)	86
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	48, 409, 478
BstKTI	GATC	6 cut(s)	71, 90, 180, 254, 363, 416
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
BstMCI	CGRYCG	2 cut(s)	254, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 345
BstSCI	CCNGG	2 cut(s)	220, 333
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	4 cut(s)	5, 194, 290, 343
BtsCI	GGATG	3 cut(s)	48, 409, 478
BtsI	GCAGTG	1 cut(s)	376
BtsIMutI	CAGTG	2 cut(s)	376, 384
Cac8I	GCNNGC	1 cut(s)	341
Cfr13I	GGNCC	3 cut(s)	4, 238, 342
CviAII	CATG	1 cut(s)	145
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	6 cut(s)	70, 89, 179, 253, 362, 415
DpnII	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
EciI	GGCGGA	2 cut(s)	23, 61
Eco47I	GGWCC	1 cut(s)	238
EcoO109I	RGGNCCY	1 cut(s)	238
FaeI	CATG	1 cut(s)	148
FaiI	YATR	1 cut(s)	146
FaqI	GGGAC	2 cut(s)	224, 298
FatI	CATG	1 cut(s)	144
FbaI	TGATCA	1 cut(s)	360
FokI	GGATG	2 cut(s)	35, 416
GsaI	CCCAGC	1 cut(s)	79
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	5, 194, 290, 343
HapII	CCGG	2 cut(s)	222, 334
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	5 cut(s)	9, 22, 131, 311, 374
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	2 cut(s)	222, 334
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	7 cut(s)	21, 124, 136, 174, 281, 304, 352
Hpy188III	TCNNGA	6 cut(s)	61, 85, 91, 151, 187, 417
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	3 cut(s)	164, 281, 326
HpyAV	CCTTC	6 cut(s)	67, 119, 184, 223, 404, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 345
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	148
KflI	GGGWCCC	1 cut(s)	238
Ksp22I	TGATCA	1 cut(s)	360
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
LguI	GCTCTTC	1 cut(s)	86
LmnI	GCTCC	4 cut(s)	36, 59, 213, 230
LweI	GCATC	1 cut(s)	394
MalI	GATC	6 cut(s)	70, 89, 179, 253, 362, 415
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
MboII	GAAGA	3 cut(s)	4, 73, 294
MflI	RGATCY	1 cut(s)	177
MlyI	GAGTC	2 cut(s)	31, 320
MmeI	TCCRAC	1 cut(s)	259
MseI	TTAA	2 cut(s)	267, 455
MspI	CCGG	2 cut(s)	222, 334
MspR9I	CCNGG	2 cut(s)	222, 335
MwoI	GCNNNNNNNGC	2 cut(s)	154, 345
NciI	CCSGG	2 cut(s)	222, 335
NdeII	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	5 cut(s)	179, 209, 226, 239, 240
NmeAIII	GCCGAG	1 cut(s)	226
PciSI	GCTCTTC	1 cut(s)	86
PcsI	WCGNNNNNNNCGW	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	9, 131, 374
Ple19I	CGATCG	1 cut(s)	254
PleI	GAGTC	2 cut(s)	30, 319
PpsI	GAGTC	2 cut(s)	30, 319
PpuMI	RGGWCCY	1 cut(s)	238
Psp5II	RGGWCCY	1 cut(s)	238
PspFI	CCCAGC	1 cut(s)	75
PspN4I	GGNNCC	5 cut(s)	179, 209, 226, 239, 240
PspPI	GGNCC	3 cut(s)	4, 238, 342
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	177
PvuI	CGATCG	1 cut(s)	254
RgaI	GCGATCGC	1 cut(s)	254
SapI	GCTCTTC	1 cut(s)	86
SaqAI	TTAA	2 cut(s)	267, 455
Sau3AI	GATC	6 cut(s)	68, 87, 177, 251, 360, 413
Sau96I	GGNCC	3 cut(s)	4, 238, 342
SchI	GAGTC	2 cut(s)	31, 320
ScrFI	CCNGG	2 cut(s)	222, 335
SfaAI	GCGATCGC	1 cut(s)	254
SfaNI	GCATC	1 cut(s)	394
SgfI	GCGATCGC	1 cut(s)	254
SinI	GGWCC	1 cut(s)	238
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
SsiI	CCGC	4 cut(s)	34, 52, 72, 407
StyD4I	CCNGG	2 cut(s)	220, 333
TaqI	TCGA	5 cut(s)	62, 84, 90, 159, 468
TfiI	GAWTC	3 cut(s)	9, 131, 374
Tru1I	TTAA	2 cut(s)	267, 455
Tru9I	TTAA	2 cut(s)	267, 455
TscAI	CASTG	2 cut(s)	376, 384
TspGWI	ACGGA	1 cut(s)	310
TspRI	CASTG	2 cut(s)	376, 384
VpaK11BI	GGWCC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.