Rroxscaffold_2G00097910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002459
Physical Location & Seq
Forward (+)
19117296 .. 19119262
1967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097910.1

Sequence Viewer

Length: 498 bp
ATGGCAAGGTCTCTGTCCCAAACCCTGACCCTCACCCGCCACCTCTCCCCCAAAACGTCGTCGTCTTTCATAACCCTCCGCGCCCAATCCAACCTCCCCTTCCACCATGACCAATCCGATCCCGCCGCCGCCGCCGCCGACTCCGTCGATCCCCTCCTCCGCAAGCTCGAGGACGCCATCCACCGCATCATCGTCCGCAAGTCCGCCCCCGATTGGCTCCCCTTCGTCCCCGGCGCCTCCTACTGGGTCCCGCCGCCGCGGTCCAGATCCCACGGCCTCGCCCAGCTCGTCGAGAAGCTCGCCAATCCCATGACGGAGGAGGAGTCCATGTCCATGACCACCGTTCGCGGCTGGCCTTCCTCCGCTTATTTCATTCAAGGTTCACCTCCACTGATGGAGGCATTCGTTCCGAAATCTGATAATGCGGAGCAAAGTTTGGGTAGTGCCGATCGTAAGTCGGATAATGCACCCAATTCTGAGGAGGAGGAAGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

165

Amino Acids

18.11

Weight (kDa)

5.51

Isoelectric Point (pI)

72.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 233
AccII CGCG 3 cut(s) 81, 259, 348
AclWI GGATC 3 cut(s) 113, 143, 261
AcyI GRCGYC 2 cut(s) 174, 234
AfiI CCNNNNNNNGG 2 cut(s) 213, 243
AgsI TTSAA 1 cut(s) 377
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AluBI AGCT 3 cut(s) 166, 286, 298
AluI AGCT 3 cut(s) 166, 286, 298
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 3 cut(s) 113, 143, 261
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 274, 353
AspLEI GCGC 2 cut(s) 83, 236
AspS9I GGNCC 2 cut(s) 247, 261
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 25, 375
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 247, 261
BanI GGYRCC 1 cut(s) 233
BccI CCATC 2 cut(s) 185, 388
BceAI ACGGC 1 cut(s) 289
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 15
BfoI RGCGCY 1 cut(s) 237
BisI GCNGC 7 cut(s) 126, 129, 132, 135, 254, 257, 349
BlsI GCNGC 7 cut(s) 127, 130, 133, 136, 255, 258, 350
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 247, 261
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 2 cut(s) 247, 261
BmiI GGNNCC 4 cut(s) 218, 235, 248, 249
BmrFI CCNGG 1 cut(s) 231
BmrI ACTGGG 1 cut(s) 253
BmsI GCATC 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 253
BpuMI CCSGG 1 cut(s) 231
BsaHI GRCGYC 2 cut(s) 174, 234
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 3 cut(s) 229, 257, 271
BsaXI ACNNNNNCTCC 4 cut(s) 308, 314, 338, 344
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 243
Bse1I ACTGG 1 cut(s) 248
BseDI CCNNGG 3 cut(s) 229, 257, 271
BseGI GGATG 1 cut(s) 177
BseLI CCNNNNNNNGG 2 cut(s) 213, 243
BseMII CTCAG 1 cut(s) 468
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 5 cut(s) 146, 332, 335, 494, 497
BseYI CCCAGC 1 cut(s) 282
Bsh1236I CGCG 3 cut(s) 81, 259, 348
Bsh1285I CGRYCG 1 cut(s) 451
BshFI GGCC 2 cut(s) 276, 355
BshNI GGYRCC 1 cut(s) 233
BsiEI CGRYCG 1 cut(s) 451
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 2 cut(s) 212, 233
BslI CCNNNNNNNGG 2 cut(s) 213, 243
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 2 cut(s) 212, 233
BsmI GAATGC 1 cut(s) 401
BsnI GGCC 2 cut(s) 276, 355
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 167
Bsp143I GATC 4 cut(s) 118, 148, 266, 448
BspANI GGCC 2 cut(s) 276, 355
BspCNI CTCAG 1 cut(s) 469
BspFNI CGCG 3 cut(s) 81, 259, 348
BspLI GGNNCC 4 cut(s) 218, 235, 248, 249
BspPI GGATC 3 cut(s) 113, 143, 261
BspT107I GGYRCC 1 cut(s) 233
BspTNI GGTCTC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 3 cut(s) 229, 257, 271
BssMI GATC 4 cut(s) 118, 148, 266, 448
BssNI GRCGYC 2 cut(s) 174, 234
Bst4CI ACNGT 1 cut(s) 343
BstACI GRCGYC 2 cut(s) 174, 234
BstC8I GCNNGC 3 cut(s) 164, 300, 353
BstDEI CTNAG 1 cut(s) 477
BstDSI CCRYGG 2 cut(s) 257, 271
BstF5I GGATG 1 cut(s) 177
BstFNI CGCG 3 cut(s) 81, 259, 348
BstH2I RGCGCY 1 cut(s) 237
BstHHI GCGC 2 cut(s) 83, 236
BstKTI GATC 4 cut(s) 121, 151, 269, 451
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 4 cut(s) 118, 148, 266, 448
BstMCI CGRYCG 1 cut(s) 451
BstMWI GCNNNNNNNGC 2 cut(s) 131, 134
BstSCI CCNGG 1 cut(s) 229
BstUI CGCG 3 cut(s) 81, 259, 348
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 2 cut(s) 276, 355
BtgI CCRYGG 2 cut(s) 257, 271
BtsCI GGATG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 389
Cac8I GCNNGC 3 cut(s) 164, 300, 353
CfoI GCGC 2 cut(s) 83, 236
Cfr13I GGNCC 2 cut(s) 247, 261
Cfr42I CCGCGG 1 cut(s) 260
CseI GACGC 1 cut(s) 182
CviAII CATG 4 cut(s) 107, 310, 328, 334
CviJI RGCY 7 cut(s) 166, 217, 276, 286, 298, 351, 355
CviKI_1 RGCY 7 cut(s) 166, 217, 276, 286, 298, 351, 355
DdeI CTNAG 1 cut(s) 477
DinI GGCGCC 1 cut(s) 235
DpnI GATC 4 cut(s) 120, 150, 268, 450
DpnII GATC 4 cut(s) 118, 148, 266, 448
EciI GGCGGA 1 cut(s) 193
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 2 cut(s) 247, 261
Eco88I CYCGRG 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 247
EgeI GGCGCC 1 cut(s) 235
EheI GGCGCC 1 cut(s) 235
FaeI CATG 4 cut(s) 110, 313, 331, 337
FaiI YATR 5 cut(s) 71, 108, 311, 329, 335
FaqI GGGAC 2 cut(s) 212, 233
FatI CATG 4 cut(s) 106, 309, 327, 333
FauI CCCGC 3 cut(s) 44, 130, 258
Fnu4HI GCNGC 7 cut(s) 126, 129, 132, 135, 254, 257, 349
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 7 cut(s) 126, 129, 132, 135, 254, 257, 349
GlaI GCGC 2 cut(s) 82, 235
GluI GCNGC 7 cut(s) 126, 129, 132, 135, 254, 257, 349
GsaI CCCAGC 1 cut(s) 286
HaeII RGCGCY 1 cut(s) 237
HaeIII GGCC 2 cut(s) 276, 355
HapII CCGG 1 cut(s) 231
HgaI GACGC 1 cut(s) 182
HhaI GCGC 2 cut(s) 83, 236
Hin1I GRCGYC 2 cut(s) 174, 234
Hin1II CATG 4 cut(s) 110, 313, 331, 337
Hin6I GCGC 2 cut(s) 81, 234
HinP1I GCGC 2 cut(s) 81, 234
HinfI GANTC 2 cut(s) 140, 323
HpaII CCGG 1 cut(s) 231
HphI GGTGA 2 cut(s) 25, 375
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 5 cut(s) 118, 411, 418, 460, 478
Hpy188III TCNNGA 2 cut(s) 264, 292
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 4 cut(s) 61, 64, 149, 293
HpyAV CCTTC 4 cut(s) 109, 232, 366, 485
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 134
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 2 cut(s) 174, 234
Hsp92II CATG 4 cut(s) 110, 313, 331, 337
HspAI GCGC 2 cut(s) 81, 234
KasI GGCGCC 1 cut(s) 233
KflI GGGWCCC 1 cut(s) 247
KspI CCGCGG 1 cut(s) 260
Kzo9I GATC 4 cut(s) 118, 148, 266, 448
LmnI GCTCC 2 cut(s) 222, 427
LpnPI CCDG 6 cut(s) 38, 229, 244, 277, 296, 337
LweI GCATC 1 cut(s) 195
MaeII ACGT 1 cut(s) 56
MalI GATC 4 cut(s) 120, 150, 268, 450
MboI GATC 4 cut(s) 118, 148, 266, 448
MflI RGATCY 1 cut(s) 266
MluCI AATT 1 cut(s) 472
Mly113I GGCGCC 1 cut(s) 234
MlyI GAGTC 2 cut(s) 134, 332
MmeI TCCRAC 2 cut(s) 114, 438
MslI CAYNNNNRTG 1 cut(s) 332
MspA1I CMGCKG 1 cut(s) 259
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 401
MvnI CGCG 3 cut(s) 81, 259, 348
MwoI GCNNNNNNNGC 2 cut(s) 131, 134
NarI GGCGCC 1 cut(s) 234
NciI CCSGG 1 cut(s) 231
NdeII GATC 4 cut(s) 118, 148, 266, 448
NlaIII CATG 4 cut(s) 110, 313, 331, 337
NlaIV GGNNCC 4 cut(s) 218, 235, 248, 249
PaeR7I CTCGAG 1 cut(s) 167
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PctI GAATGC 1 cut(s) 401
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 7 cut(s) 127, 130, 133, 136, 255, 258, 350
Ple19I CGATCG 1 cut(s) 451
PleI GAGTC 2 cut(s) 134, 331
PluTI GGCGCC 1 cut(s) 237
PpsI GAGTC 2 cut(s) 134, 331
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 282
PspN4I GGNNCC 4 cut(s) 218, 235, 248, 249
PspPI GGNCC 2 cut(s) 247, 261
PspPPI RGGWCCY 1 cut(s) 247
PspXI VCTCGAGB 1 cut(s) 167
PsuI RGATCY 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 143
PvuI CGATCG 1 cut(s) 451
RseI CAYNNNNRTG 1 cut(s) 332
SacII CCGCGG 1 cut(s) 260
SatI GCNGC 7 cut(s) 126, 129, 132, 135, 254, 257, 349
Sau3AI GATC 4 cut(s) 118, 148, 266, 448
Sau96I GGNCC 2 cut(s) 247, 261
SchI GAGTC 2 cut(s) 134, 332
ScrFI CCNGG 1 cut(s) 231
SetI ASST 9 cut(s) 11, 45, 59, 96, 168, 288, 300, 382, 388
SfaNI GCATC 1 cut(s) 195
SfoI GGCGCC 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 167
Sfr303I CCGCGG 1 cut(s) 260
SgrBI CCGCGG 1 cut(s) 260
SinI GGWCC 2 cut(s) 247, 261
SlaI CTCGAG 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 332
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 472
SspDI GGCGCC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 1 cut(s) 59
TaqI TCGA 3 cut(s) 147, 168, 291
TasI AATT 1 cut(s) 472
TauI GCSGC 7 cut(s) 128, 131, 134, 137, 256, 259, 351
TscAI CASTG 1 cut(s) 396
TspDTI ATGAA 2 cut(s) 58, 361
TspGWI ACGGA 2 cut(s) 133, 329
TspRI CASTG 1 cut(s) 396
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 247, 261
XhoI CTCGAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.