Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

1545663 .. 1547613

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G021500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGCAAGGTCCATCTCTCAAACCCTTACCCTAACCCGCCACCTCTCATCCAAATCATCGCCGTCTTCCTCCTCTCGCCTCATAACCCTCCGGGCCCAATCAAACCTTCCTTTTCACCATGACCCAACAACAGACTCATCCACCGACTCTCCTTCTGATCCCCTTTTGCGAAAGCTCGAGGACGCCATCCACCGGATCATGGTCCGCCGATCCGCACCCGATTGGCTCCCGTTTCTTCCCGGTACCTCCTACTGGGTCCCACCGCCCCGGTCAAGATCCACCGGTCTGGCTCAGCTGGTCGATAAGCTGGCCAACCCTTTGACTGAGGAGGAGACCTTGTCTATGACCACCATTAGAGGCTGGCCTTCTTCTGCTTACTTCATAGAAGGTGCATCTCCACAACCGATGGAGGCGGTGGATCAAAGTTCTAATAACGTGTCCTCCAAGTCTGAAGATGAGGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.06

Weight (kDa)

5.77

Isoelectric Point (pI)

86.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	242
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	5 cut(s)	37, 205, 213, 263, 413
AclWI	GGATC	5 cut(s)	152, 203, 204, 270, 426
AcoI	YGGCCR	1 cut(s)	309
AcyI	GRCGYC	1 cut(s)	183
AfaI	GTAC	1 cut(s)	244
AfiI	CCNNNNNNNGG	3 cut(s)	192, 199, 252
AflIII	ACRYGT	1 cut(s)	435
AgeI	ACCGGT	1 cut(s)	281
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	3 cut(s)	175, 295, 307
AluI	AGCT	3 cut(s)	175, 295, 307
Alw26I	GTCTC	1 cut(s)	326
AlwI	GGATC	5 cut(s)	152, 203, 204, 270, 426
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	93, 309, 362
ApaI	GGGCCC	1 cut(s)	97
AsiGI	ACCGGT	1 cut(s)	281
Asp718I	GGTACC	1 cut(s)	242
AspS9I	GGNCC	5 cut(s)	9, 93, 94, 202, 256
AsuC2I	CCSGG	3 cut(s)	92, 240, 268
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	3 cut(s)	9, 202, 256
BaeGI	GKGCMC	1 cut(s)	97
BalI	TGGCCA	1 cut(s)	311
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	57
BccI	CCATC	3 cut(s)	20, 194, 400
BceAI	ACGGC	1 cut(s)	46
BcnI	CCSGG	3 cut(s)	92, 240, 268
BcoDI	GTCTC	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	291
Bme1390I	CCNGG	3 cut(s)	92, 240, 268
Bme18I	GGWCC	3 cut(s)	9, 202, 256
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	5 cut(s)	9, 93, 94, 202, 256
BmiI	GGNNCC	5 cut(s)	95, 227, 244, 257, 258
BmrFI	CCNGG	3 cut(s)	92, 240, 268
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	401
BmuI	ACTGGG	1 cut(s)	262
BpiI	GAAGAC	1 cut(s)	57
Bpu1102I	GCTNAGC	1 cut(s)	291
BpuMI	CCSGG	3 cut(s)	92, 240, 268
BsaHI	GRCGYC	1 cut(s)	183
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	1 cut(s)	266
BsaWI	WCCGGW	2 cut(s)	192, 281
BsaXI	ACNNNNNCTCC	6 cut(s)	133, 163, 323, 353, 425, 455
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 199, 252
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	3 cut(s)	47, 137, 186
BseLI	CCNNNNNNNGG	3 cut(s)	192, 199, 252
BseMII	CTCAG	2 cut(s)	305, 315
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	61, 341, 344
BseSI	GKGCMC	1 cut(s)	97
BshFI	GGCC	3 cut(s)	95, 311, 364
BshNI	GGYRCC	1 cut(s)	242
BshTI	ACCGGT	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	5 cut(s)	91, 193, 240, 268, 282
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	3 cut(s)	192, 199, 252
BsmAI	GTCTC	1 cut(s)	326
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	95, 311, 364
Bso31I	GGTCTC	1 cut(s)	326
BsoBI	CYCGRG	1 cut(s)	176
Bsp120I	GGGCCC	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp143I	GATC	5 cut(s)	157, 195, 209, 275, 418
Bsp1720I	GCTNAGC	1 cut(s)	291
BspACI	CCGC	5 cut(s)	37, 205, 213, 263, 413
BspANI	GGCC	3 cut(s)	95, 311, 364
BspCNI	CTCAG	2 cut(s)	304, 316
BspLI	GGNNCC	5 cut(s)	95, 227, 244, 257, 258
BspPI	GGATC	5 cut(s)	152, 203, 204, 270, 426
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	5 cut(s)	157, 195, 209, 275, 418
BssNI	GRCGYC	1 cut(s)	183
BstACI	GRCGYC	1 cut(s)	183
BstC8I	GCNNGC	2 cut(s)	309, 362
BstDEI	CTNAG	2 cut(s)	291, 324
BstF5I	GGATG	3 cut(s)	47, 137, 186
BstKTI	GATC	5 cut(s)	160, 198, 212, 278, 421
BstMAI	GTCTC	1 cut(s)	326
BstMBI	GATC	5 cut(s)	157, 195, 209, 275, 418
BstSCI	CCNGG	3 cut(s)	90, 238, 266
BstSLI	GKGCMC	1 cut(s)	97
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	95, 311, 364
BtgZI	GCGATG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	47, 137, 186
Cac8I	GCNNGC	2 cut(s)	309, 362
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	5 cut(s)	9, 93, 94, 202, 256
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	243
CspAI	ACCGGT	1 cut(s)	281
CviAII	CATG	2 cut(s)	119, 199
CviJI	RGCY	9 cut(s)	95, 175, 226, 290, 295, 307, 311, 360, 364
CviKI_1	RGCY	9 cut(s)	95, 175, 226, 290, 295, 307, 311, 360, 364
CviQI	GTAC	1 cut(s)	243
DdeI	CTNAG	2 cut(s)	291, 324
DpnI	GATC	5 cut(s)	159, 197, 211, 277, 420
DpnII	GATC	5 cut(s)	157, 195, 209, 275, 418
EaeI	YGGCCR	1 cut(s)	309
EciI	GGCGGA	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	326
Eco47I	GGWCC	3 cut(s)	9, 202, 256
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	2 cut(s)	122, 202
FaiI	YATR	5 cut(s)	83, 120, 200, 344, 383
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	118, 198
FauI	CCCGC	1 cut(s)	44
FokI	GGATG	3 cut(s)	34, 124, 173
FriOI	GRGCYC	1 cut(s)	97
HaeIII	GGCC	3 cut(s)	95, 311, 364
HapII	CCGG	5 cut(s)	91, 193, 240, 268, 282
HgaI	GACGC	1 cut(s)	191
Hin1I	GRCGYC	1 cut(s)	183
Hin1II	CATG	2 cut(s)	122, 202
HinfI	GANTC	2 cut(s)	134, 146
HpaII	CCGG	5 cut(s)	91, 193, 240, 268, 282
HphI	GGTGA	1 cut(s)	107
Hpy188I	TCNGA	2 cut(s)	157, 451
Hpy188III	TCNNGA	1 cut(s)	273
HpyAV	CCTTC	5 cut(s)	116, 162, 375, 380, 455
HpyCH4IV	ACGT	1 cut(s)	435
HpyCH4V	TGCA	1 cut(s)	392
HpyF3I	CTNAG	2 cut(s)	291, 324
HpySE526I	ACGT	1 cut(s)	435
Hsp92I	GRCGYC	1 cut(s)	183
Hsp92II	CATG	2 cut(s)	122, 202
KflI	GGGWCCC	1 cut(s)	256
KpnI	GGTACC	1 cut(s)	246
Kzo9I	GATC	5 cut(s)	157, 195, 209, 275, 418
LmnI	GCTCC	1 cut(s)	231
LweI	GCATC	1 cut(s)	401
MaeII	ACGT	1 cut(s)	435
MalI	GATC	5 cut(s)	159, 197, 211, 277, 420
MboI	GATC	5 cut(s)	157, 195, 209, 275, 418
MboII	GAAGA	4 cut(s)	57, 227, 360, 464
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	97
MlsI	TGGCCA	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	311
MlyI	GAGTC	2 cut(s)	128, 140
Mox20I	TGGCCA	1 cut(s)	311
MscI	TGGCCA	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	311
MspA1I	CMGCKG	1 cut(s)	295
MspI	CCGG	5 cut(s)	91, 193, 240, 268, 282
MspR9I	CCNGG	3 cut(s)	92, 240, 268
NciI	CCSGG	3 cut(s)	92, 240, 268
NdeII	GATC	5 cut(s)	157, 195, 209, 275, 418
NlaIII	CATG	2 cut(s)	122, 202
NlaIV	GGNNCC	5 cut(s)	95, 227, 244, 257, 258
PaeR7I	CTCGAG	1 cut(s)	176
PflFI	GACNNNGTC	1 cut(s)	337
PinAI	ACCGGT	1 cut(s)	281
PleI	GAGTC	2 cut(s)	128, 140
PpsI	GAGTC	2 cut(s)	128, 140
PpuMI	RGGWCCY	1 cut(s)	256
Psp5II	RGGWCCY	1 cut(s)	256
PspN4I	GGNNCC	5 cut(s)	95, 227, 244, 257, 258
PspOMI	GGGCCC	1 cut(s)	93
PspPI	GGNCC	5 cut(s)	9, 93, 94, 202, 256
PspPPI	RGGWCCY	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	275
PsyI	GACNNNGTC	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	295
RsaI	GTAC	1 cut(s)	244
RsaNI	GTAC	1 cut(s)	243
Sau3AI	GATC	5 cut(s)	157, 195, 209, 275, 418
Sau96I	GGNCC	5 cut(s)	9, 93, 94, 202, 256
SchI	GAGTC	2 cut(s)	128, 140
ScrFI	CCNGG	3 cut(s)	92, 240, 268
SduI	GDGCHC	1 cut(s)	97
SfaNI	GCATC	1 cut(s)	401
Sfr274I	CTCGAG	1 cut(s)	176
SinI	GGWCC	3 cut(s)	9, 202, 256
SlaI	CTCGAG	1 cut(s)	176
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	5 cut(s)	37, 205, 213, 263, 413
StyD4I	CCNGG	3 cut(s)	90, 238, 266
TaiI	ACGT	1 cut(s)	438
TaqI	TCGA	2 cut(s)	177, 300
TspDTI	ATGAA	1 cut(s)	370
Tth111I	GACNNNGTC	1 cut(s)	337
VpaK11BI	GGWCC	3 cut(s)	9, 202, 256
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.