Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

13483821 .. 13485081

Gene Structure 1261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG088600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCCCGATTCTTCTTCACTCAGAGTCTCCAACTCCGCCACTCCCTCCTCCGGTGCCGGCCCCGGCCAGTCCATGCCCACCGGGCCTACTCGACCCGATCCGGGCAGCTCTTCGAGATCGAGATAAACCCCTCCACCTCCACCTCATCGGAAGGCGAATCGGAGGCCCTCATGCTCAAGAAGCTAGACGACATCGTTCAGAGGATCCTCGTCCAGAAGGCCACCCCCGATTGGCTCCCCTTCGTTCCCGGCTCCTCCTTCTGGGTCCCGCCCCGACGGTCCCCCCTCGGAGTCAACGACTTCGTCGGAACATTGGCTGACAAGCTCTCCGATGAGGAGTCCCTCTCCGTCGCCACCGACCGAGGCTGGCCCTGCTCTGGTTTTTTCATCAATGGCAGTGAATCTGCGGAAATAAAGGAGGTTGGTGATGAGGCAGAAGGATCAGGAGAACTAGAGGTGGTGGAGGTGGATGTAAAGGTTTTGACAGCCAACTTCGAGGATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.67

Weight (kDa)

4.8

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	54
AciI	CCGC	3 cut(s)	37, 269, 407
AclWI	GGATC	4 cut(s)	93, 199, 212, 448
AcoI	YGGCCR	1 cut(s)	65
AfiI	CCNNNNNNNGG	5 cut(s)	51, 102, 231, 261, 377
AluBI	AGCT	3 cut(s)	109, 184, 325
AluI	AGCT	3 cut(s)	109, 184, 325
Alw26I	GTCTC	1 cut(s)	32
AlwI	GGATC	4 cut(s)	93, 199, 212, 448
AoxI	GGCC	7 cut(s)	3, 59, 65, 84, 165, 219, 368
ApeKI	GCWGC	1 cut(s)	106
AspS9I	GGNCC	7 cut(s)	4, 60, 84, 166, 265, 279, 369
AsuC2I	CCSGG	4 cut(s)	64, 83, 103, 249
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	265, 279
BamHI	GGATCC	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	118
BcnI	CCSGG	4 cut(s)	64, 83, 103, 249
BcoDI	GTCTC	1 cut(s)	32
BfaI	CTAG	2 cut(s)	185, 452
BglI	GCCNNNNNGGC	1 cut(s)	83
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme1390I	CCNGG	4 cut(s)	64, 83, 103, 249
Bme18I	GGWCC	2 cut(s)	265, 279
BmgT120I	GGNCC	7 cut(s)	4, 60, 84, 166, 265, 279, 369
BmiI	GGNNCC	8 cut(s)	56, 62, 206, 236, 253, 266, 267, 281
BmrFI	CCNGG	4 cut(s)	64, 83, 103, 249
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
BpuEI	CTTGAG	1 cut(s)	161
BpuMI	CCSGG	4 cut(s)	64, 83, 103, 249
BsaJI	CCNNGG	3 cut(s)	62, 286, 361
BsaWI	WCCGGW	1 cut(s)	51
BsaXI	ACNNNNNCTCC	2 cut(s)	311, 341
Bsc4I	CCNNNNNNNGG	5 cut(s)	51, 102, 231, 261, 377
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	68
BseDI	CCNNGG	3 cut(s)	62, 286, 361
BseGI	GGATG	2 cut(s)	475, 505
BseLI	CCNNNNNNNGG	5 cut(s)	51, 102, 231, 261, 377
BseMII	CTCAG	1 cut(s)	35
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	3 cut(s)	38, 244, 350
BseXI	GCAGC	1 cut(s)	118
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	7 cut(s)	5, 61, 67, 86, 167, 221, 370
BshNI	GGYRCC	1 cut(s)	54
BsiEI	CGRYCG	1 cut(s)	361
BsiSI	CCGG	6 cut(s)	52, 58, 64, 82, 102, 249
BslFI	GGGAC	3 cut(s)	251, 265, 325
BslI	CCNNNNNNNGG	5 cut(s)	51, 102, 231, 261, 377
BsmAI	GTCTC	1 cut(s)	32
BsmFI	GGGAC	3 cut(s)	251, 265, 325
BsnI	GGCC	7 cut(s)	5, 61, 67, 86, 167, 221, 370
Bsp143I	GATC	4 cut(s)	98, 117, 204, 440
BspACI	CCGC	3 cut(s)	37, 269, 407
BspANI	GGCC	7 cut(s)	5, 61, 67, 86, 167, 221, 370
BspCNI	CTCAG	1 cut(s)	34
BspLI	GGNNCC	8 cut(s)	56, 62, 206, 236, 253, 266, 267, 281
BspPI	GGATC	4 cut(s)	93, 199, 212, 448
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	68
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	3 cut(s)	62, 286, 361
BssMI	GATC	4 cut(s)	98, 117, 204, 440
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	116
BstC8I	GCNNGC	2 cut(s)	59, 368
BstDEI	CTNAG	1 cut(s)	21
BstF5I	GGATG	2 cut(s)	475, 505
BstKTI	GATC	4 cut(s)	101, 120, 207, 443
BstMAI	GTCTC	1 cut(s)	32
BstMBI	GATC	4 cut(s)	98, 117, 204, 440
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 181, 372
BstSCI	CCNGG	4 cut(s)	62, 81, 101, 247
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	7 cut(s)	5, 61, 67, 86, 167, 221, 370
BtsCI	GGATG	2 cut(s)	475, 505
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	1 cut(s)	403
Cac8I	GCNNGC	2 cut(s)	59, 368
Cfr10I	RCCGGY	1 cut(s)	57
Cfr13I	GGNCC	7 cut(s)	4, 60, 84, 166, 265, 279, 369
CviAII	CATG	2 cut(s)	74, 172
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	4 cut(s)	100, 119, 206, 442
DpnII	GATC	4 cut(s)	98, 117, 204, 440
EaeI	YGGCCR	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
EciI	GGCGGA	1 cut(s)	26
Eco47I	GGWCC	2 cut(s)	265, 279
EcoO109I	RGGNCCY	2 cut(s)	166, 265
FaeI	CATG	2 cut(s)	77, 175
FaiI	YATR	2 cut(s)	75, 173
FaqI	GGGAC	3 cut(s)	251, 265, 325
FatI	CATG	2 cut(s)	73, 171
FauI	CCCGC	1 cut(s)	276
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	2 cut(s)	185, 452
GluI	GCNGC	1 cut(s)	107
HaeIII	GGCC	7 cut(s)	5, 61, 67, 86, 167, 221, 370
HapII	CCGG	6 cut(s)	52, 58, 64, 82, 102, 249
Hin1II	CATG	2 cut(s)	77, 175
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	6 cut(s)	9, 25, 158, 291, 338, 401
HpaII	CCGG	6 cut(s)	52, 58, 64, 82, 102, 249
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	7 cut(s)	24, 151, 163, 201, 290, 308, 331
Hpy188III	TCNNGA	5 cut(s)	115, 121, 178, 214, 444
Hpy8I	GTNNAC	1 cut(s)	295
Hpy99I	CGWCG	3 cut(s)	279, 308, 353
HpyAV	CCTTC	5 cut(s)	146, 211, 250, 268, 431
HpyCH4III	ACNGT	1 cut(s)	279
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 181, 372
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	2 cut(s)	77, 175
KflI	GGGWCCC	1 cut(s)	265
KroI	GCCGGC	1 cut(s)	57
KroNI	GCCGGC	1 cut(s)	59
Kzo9I	GATC	4 cut(s)	98, 117, 204, 440
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	2 cut(s)	240, 257
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	2 cut(s)	185, 452
MalI	GATC	4 cut(s)	100, 119, 206, 442
MboI	GATC	4 cut(s)	98, 117, 204, 440
MboII	GAAGA	3 cut(s)	4, 7, 103
MflI	RGATCY	1 cut(s)	204
MlyI	GAGTC	3 cut(s)	34, 300, 347
MmeI	TCCRAC	2 cut(s)	55, 286
MroNI	GCCGGC	1 cut(s)	57
MspI	CCGG	6 cut(s)	52, 58, 64, 82, 102, 249
MspR9I	CCNGG	4 cut(s)	64, 83, 103, 249
MwoI	GCNNNNNNNGC	3 cut(s)	83, 181, 372
NaeI	GCCGGC	1 cut(s)	59
NciI	CCSGG	4 cut(s)	64, 83, 103, 249
NdeII	GATC	4 cut(s)	98, 117, 204, 440
NgoMIV	GCCGGC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	77, 175
NlaIV	GGNNCC	8 cut(s)	56, 62, 206, 236, 253, 266, 267, 281
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PdiI	GCCGGC	1 cut(s)	59
PfeI	GAWTC	3 cut(s)	9, 158, 401
PflFI	GACNNNGTC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	3 cut(s)	33, 299, 346
PpsI	GAGTC	3 cut(s)	33, 299, 346
PpuMI	RGGWCCY	1 cut(s)	265
Psp5II	RGGWCCY	1 cut(s)	265
PspN4I	GGNNCC	8 cut(s)	56, 62, 206, 236, 253, 266, 267, 281
PspPI	GGNCC	7 cut(s)	4, 60, 84, 166, 265, 279, 369
PspPPI	RGGWCCY	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	204
PsyI	GACNNNGTC	1 cut(s)	302
SapI	GCTCTTC	1 cut(s)	116
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	4 cut(s)	98, 117, 204, 440
Sau96I	GGNCC	7 cut(s)	4, 60, 84, 166, 265, 279, 369
SchI	GAGTC	3 cut(s)	34, 300, 347
ScrFI	CCNGG	4 cut(s)	64, 83, 103, 249
SetI	ASST	9 cut(s)	111, 140, 146, 186, 327, 423, 459, 468, 480
SinI	GGWCC	2 cut(s)	265, 279
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SsiI	CCGC	3 cut(s)	37, 269, 407
SspMI	CTAG	2 cut(s)	185, 452
StyD4I	CCNGG	4 cut(s)	62, 81, 101, 247
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	92, 114, 120, 495
TaqII	GACCGA	1 cut(s)	375
TfiI	GAWTC	3 cut(s)	9, 158, 401
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	1 cut(s)	106
TspDTI	ATGAA	1 cut(s)	376
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	1 cut(s)	403
Tth111I	GACNNNGTC	1 cut(s)	302
VpaK11BI	GGWCC	2 cut(s)	265, 279
XspI	CTAG	2 cut(s)	185, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.