Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Forward (+)

5483368 .. 5486365

Gene Structure 2998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G076200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCCGCCTCCTCACTCAAACTCTGCAACTGCGCCACTCTCTCCTGCACCGCCCTCGGGTCCCGCCCTCCCTGACCCAGGCCCATCGGGCCCGATCGACCCGATCCGGCAAGGCCCAGTTGATTGAGATCGACCTTGACCCGTCCACCTCGTCGTCGTCGTCGTCGTCATCGCCAGCGAATGATTCGGAGAAATTAATGCTAAAGAAGCTAGACGACATCGTTCAGACCATCCTCATCCAGAGGGCCACTCCCGATTGGCTCCCCTTCGTTCCCGGCTCCTCGTTCTGGGTCCCACCTCGACTCGCCCCTTTGAAAGTGACTGACTTGGTTGGCAAATTGGCTGACCAACTCACAGATGAAGAGTCCCTCTCTGTTGCCACTGATCGAGGATGGCCTTGCTCTCAATTCTTCGTTCATGGGAGTGGATCTACAGAAACAAGGGAGGTGGATATGGAGGCAGAAGGATCAGCAGAAGTAGAGGTGGAGGTGGAGGTAAAGGTTTTGACTGAGTCACAGAAGCCATCTCGCTGTGAGGATGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

182

Amino Acids

19.96

Weight (kDa)

5.14

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	7, 52, 65
AclWI	GGATC	3 cut(s)	99, 436, 475
AfiI	CCNNNNNNNGG	3 cut(s)	58, 79, 288
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	1 cut(s)	78
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
AlwI	GGATC	3 cut(s)	99, 436, 475
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	6 cut(s)	3, 81, 90, 114, 246, 395
ApaI	GGGCCC	1 cut(s)	94
AseI	ATTAAT	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	36
AspS9I	GGNCC	8 cut(s)	4, 61, 82, 90, 91, 115, 246, 292
AsuC2I	CCSGG	1 cut(s)	276
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	2 cut(s)	61, 292
BaeGI	GKGCMC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	94
BccI	CCATC	4 cut(s)	93, 239, 387, 532
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	80
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	432
BglI	GCCNNNNNGGC	1 cut(s)	89
Bme1390I	CCNGG	2 cut(s)	80, 276
Bme18I	GGWCC	2 cut(s)	61, 292
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	8 cut(s)	4, 61, 82, 90, 91, 115, 246, 292
BmiI	GGNNCC	7 cut(s)	62, 63, 92, 263, 280, 293, 294
BmrFI	CCNGG	2 cut(s)	80, 276
BmrI	ACTGGG	1 cut(s)	112
BmuI	ACTGGG	1 cut(s)	112
BplI	GAGNNNNNCTC	4 cut(s)	235, 267, 356, 388
BpuMI	CCSGG	1 cut(s)	276
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	2 cut(s)	56, 78
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 79, 288
Bse1I	ACTGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	2 cut(s)	56, 78
BseGI	GGATG	4 cut(s)	231, 237, 398, 544
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	3 cut(s)	58, 79, 288
BseMII	CTCAG	1 cut(s)	501
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	271
BseSI	GKGCMC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	32
Bsh1285I	CGRYCG	1 cut(s)	98
BshFI	GGCC	6 cut(s)	5, 83, 92, 116, 248, 397
BsiEI	CGRYCG	1 cut(s)	98
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	2 cut(s)	108, 276
BslFI	GGGAC	3 cut(s)	47, 278, 352
BslI	CCNNNNNNNGG	3 cut(s)	58, 79, 288
BsmFI	GGGAC	3 cut(s)	47, 278, 352
BsnI	GGCC	6 cut(s)	5, 83, 92, 116, 248, 397
BsoBI	CYCGRG	1 cut(s)	57
Bsp120I	GGGCCC	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
BspACI	CCGC	3 cut(s)	7, 52, 65
BspANI	GGCC	6 cut(s)	5, 83, 92, 116, 248, 397
BspCNI	CTCAG	1 cut(s)	502
BspLI	GGNNCC	7 cut(s)	62, 63, 92, 263, 280, 293, 294
BspPI	GGATC	3 cut(s)	99, 436, 475
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	2 cut(s)	56, 78
BssMI	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
Bst2UI	CCWGG	1 cut(s)	80
Bst6I	CTCTTC	1 cut(s)	357
BstC8I	GCNNGC	2 cut(s)	7, 177
BstDEI	CTNAG	1 cut(s)	510
BstENI	CCTNNNNNAGG	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	231, 237, 398, 544
BstHHI	GCGC	1 cut(s)	36
BstKTI	GATC	6 cut(s)	98, 107, 132, 388, 431, 470
BstMBI	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
BstMCI	CGRYCG	1 cut(s)	98
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 208
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	78, 274
BstSFI	CTRYAG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	94
BstX2I	RGATCY	1 cut(s)	428
BstYI	RGATCY	1 cut(s)	428
BsuRI	GGCC	6 cut(s)	5, 83, 92, 116, 248, 397
BtgZI	GCGATG	1 cut(s)	156
BtsCI	GGATG	4 cut(s)	231, 237, 398, 544
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	7, 177
CfoI	GCGC	1 cut(s)	36
Cfr13I	GGNCC	8 cut(s)	4, 61, 82, 90, 91, 115, 246, 292
CspCI	CAANNNNNGTGG	2 cut(s)	429, 464
CviAII	CATG	1 cut(s)	419
DdeI	CTNAG	1 cut(s)	510
DpnI	GATC	6 cut(s)	97, 106, 131, 387, 430, 469
DpnII	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	61, 292
Eco88I	CYCGRG	1 cut(s)	57
EcoNI	CCTNNNNNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	2 cut(s)	61, 292
EcoRII	CCWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	94
FaeI	CATG	1 cut(s)	422
FaiI	YATR	2 cut(s)	420, 455
FaqI	GGGAC	3 cut(s)	47, 278, 352
FatI	CATG	1 cut(s)	418
FauI	CCCGC	2 cut(s)	14, 72
FokI	GGATG	3 cut(s)	218, 224, 405
FriOI	GRGCYC	1 cut(s)	94
FspBI	CTAG	1 cut(s)	212
GlaI	GCGC	1 cut(s)	35
HaeIII	GGCC	6 cut(s)	5, 83, 92, 116, 248, 397
HapII	CCGG	2 cut(s)	108, 276
HhaI	GCGC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	422
Hin6I	GCGC	1 cut(s)	34
HinP1I	GCGC	1 cut(s)	34
HinfI	GANTC	4 cut(s)	185, 303, 365, 512
HpaII	CCGG	2 cut(s)	108, 276
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	190, 228
Hpy188III	TCNNGA	2 cut(s)	241, 254
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	5 cut(s)	157, 160, 163, 166, 169
HpyAV	CCTTC	2 cut(s)	277, 458
HpyCH4V	TGCA	2 cut(s)	28, 49
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 208
HpyF3I	CTNAG	1 cut(s)	510
Hsp92II	CATG	1 cut(s)	422
HspAI	GCGC	1 cut(s)	34
KflI	GGGWCCC	2 cut(s)	61, 292
Kzo9I	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
LmnI	GCTCC	2 cut(s)	267, 284
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	2 cut(s)	319, 513
MalI	GATC	6 cut(s)	97, 106, 131, 387, 430, 469
MboI	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
MboII	GAAGA	2 cut(s)	374, 403
MflI	RGATCY	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	3 cut(s)	194, 338, 407
MlyI	GAGTC	3 cut(s)	297, 374, 521
MseI	TTAA	2 cut(s)	197, 544
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	2 cut(s)	108, 276
MspR9I	CCNGG	2 cut(s)	80, 276
MvaI	CCWGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	89, 208
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
NlaIII	CATG	1 cut(s)	422
NlaIV	GGNNCC	7 cut(s)	62, 63, 92, 263, 280, 293, 294
NmuCI	GTSAC	2 cut(s)	319, 513
PcsI	WCGNNNNNNNCGW	3 cut(s)	158, 161, 164
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	511
Ple19I	CGATCG	1 cut(s)	98
PleI	GAGTC	3 cut(s)	297, 373, 520
PpsI	GAGTC	3 cut(s)	297, 373, 520
PpuMI	RGGWCCY	2 cut(s)	61, 292
PshBI	ATTAAT	1 cut(s)	197
Psp5II	RGGWCCY	2 cut(s)	61, 292
Psp6I	CCWGG	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	7 cut(s)	62, 63, 92, 263, 280, 293, 294
PspOMI	GGGCCC	1 cut(s)	90
PspPI	GGNCC	8 cut(s)	4, 61, 82, 90, 91, 115, 246, 292
PspPPI	RGGWCCY	2 cut(s)	61, 292
PsuI	RGATCY	1 cut(s)	428
PsyI	GACNNNGTC	1 cut(s)	511
PvuI	CGATCG	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	423
SaqAI	TTAA	2 cut(s)	197, 544
Sau3AI	GATC	6 cut(s)	95, 104, 129, 385, 428, 467
Sau96I	GGNCC	8 cut(s)	4, 61, 82, 90, 91, 115, 246, 292
SchI	GAGTC	3 cut(s)	297, 374, 521
ScrFI	CCNGG	2 cut(s)	80, 276
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	9 cut(s)	138, 152, 213, 301, 450, 486, 492, 498, 504
SfcI	CTRYAG	1 cut(s)	432
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
SinI	GGWCC	2 cut(s)	61, 292
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	3 cut(s)	194, 338, 407
SsiI	CCGC	3 cut(s)	7, 52, 65
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	2 cut(s)	78, 274
TaqI	TCGA	4 cut(s)	98, 132, 301, 388
TasI	AATT	3 cut(s)	194, 338, 407
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	197, 544
Tru9I	TTAA	2 cut(s)	197, 544
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	2 cut(s)	319, 513
Tsp45I	GTSAC	2 cut(s)	319, 513
TspDTI	ATGAA	2 cut(s)	375, 407
TspRI	CASTG	1 cut(s)	388
Tth111I	GACNNNGTC	1 cut(s)	511
VpaK11BI	GGWCC	2 cut(s)	61, 292
VspI	ATTAAT	1 cut(s)	197
XagI	CCTNNNNNAGG	1 cut(s)	77
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.