FvH4_6g37060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002459
Physical Location & Seq
Reverse (-)
29122469 .. 29124348
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37060.t1

Sequence Viewer

Length: 510 bp
ATGGCAAGGTCTCTCTCCCAAACCCTCACCCTCACGCGCCACCTCTCCCCCAAAACGTCGTCGTCTTCCTCCTCCCGATTCATCACCCTCCGCGCCCAATCCAACCTCCCCTTCCACCATGACCAAACTGAGCCCTCCCCCGCCGACTCCTCCCCCGCCGTCGATCCCCTCCTCCGCAAGCTCGAGGACGCCATCCACCGCATCATCGTCCGCAAGTCCGCCCCCGATTGGCTCCCCTTCGCCCCCGGCGCCTCCTACTGGGTCCCGCCGCCGCGGTCTAGATCCCACGGTTTGGCTCAGCTCGTCGAGAAGCTTGCGAATCCGTTGACGGAGGAGGAGTCCATGTCGATGACCACCGTCCGCGGCTGGCCTTCTTCCGCTTATTTCATTCATGGTTCAACTCCACTGATGGAGGCCTTCGTTCCGGAATCTAGTAATGTGGAGCAAAGGTTGGACAGTGCCGATCATAAGTCGGATGCTGCACCCAAGTCTGAGGAGGAAGAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.63

Weight (kDa)

5.96

Isoelectric Point (pI)

82.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 292
AccII CGCG 4 cut(s) 37, 93, 274, 363
AccIII TCCGGA 1 cut(s) 424
AclWI GGATC 2 cut(s) 158, 276
AcyI GRCGYC 2 cut(s) 189, 249
AfiI CCNNNNNNNGG 3 cut(s) 228, 258, 292
AgsI TTSAA 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 3 cut(s) 181, 301, 313
AluI AGCT 3 cut(s) 181, 301, 313
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 158, 276
Ama87I CYCGRG 1 cut(s) 182
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 2 cut(s) 368, 414
ApeKI GCWGC 1 cut(s) 479
AspLEI GCGC 3 cut(s) 39, 95, 251
AspS9I GGNCC 1 cut(s) 262
AsuC2I CCSGG 1 cut(s) 246
AsuHPI GGTGA 2 cut(s) 19, 76
AvaI CYCGRG 1 cut(s) 182
AvaII GGWCC 1 cut(s) 262
BanI GGYRCC 1 cut(s) 248
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 57
BbvI GCAGC 1 cut(s) 466
BccI CCATC 2 cut(s) 200, 403
BceAI ACGGC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 296, 330
BcnI CCSGG 1 cut(s) 246
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 279, 432
BfoI RGCGCY 1 cut(s) 252
BisI GCNGC 4 cut(s) 269, 272, 364, 480
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 4 cut(s) 270, 273, 365, 481
Bme1390I CCNGG 1 cut(s) 246
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 182
BmgT120I GGNCC 1 cut(s) 262
BmiI GGNNCC 4 cut(s) 233, 250, 263, 264
BmrFI CCNGG 1 cut(s) 246
BmrI ACTGGG 1 cut(s) 268
BmsI GCATC 2 cut(s) 210, 466
BmuI ACTGGG 1 cut(s) 268
BoxI GACNNNNGTC 1 cut(s) 356
BpiI GAAGAC 1 cut(s) 57
Bpu1102I GCTNAGC 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 246
BsaHI GRCGYC 2 cut(s) 189, 249
BsaI GGTCTC 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 244, 272, 286, 361
BsaWI WCCGGW 1 cut(s) 424
BsaXI ACNNNNNCTCC 6 cut(s) 323, 329, 353, 359, 434, 464
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 258, 292
Bse1I ACTGG 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 4 cut(s) 244, 272, 286, 361
BseGI GGATG 2 cut(s) 192, 481
BseLI CCNNNNNNNGG 3 cut(s) 228, 258, 292
BseMII CTCAG 3 cut(s) 120, 311, 483
BseNI ACTGG 1 cut(s) 263
BseRI GAGGAG 6 cut(s) 61, 139, 161, 347, 350, 509
BseXI GCAGC 1 cut(s) 466
BsgI GTGCAG 1 cut(s) 465
Bsh1236I CGCG 4 cut(s) 37, 93, 274, 363
BshFI GGCC 2 cut(s) 370, 416
BshNI GGYRCC 1 cut(s) 248
BsiHKCI CYCGRG 1 cut(s) 182
BsiSI CCGG 2 cut(s) 246, 425
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 3 cut(s) 228, 258, 292
BsmAI GTCTC 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 370, 416
Bso31I GGTCTC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 135
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 3 cut(s) 163, 281, 463
Bsp1720I GCTNAGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 370, 416
BspCNI CTCAG 3 cut(s) 121, 310, 484
BspEI TCCGGA 1 cut(s) 424
BspFNI CGCG 4 cut(s) 37, 93, 274, 363
BspLI GGNNCC 4 cut(s) 233, 250, 263, 264
BspPI GGATC 2 cut(s) 158, 276
BspT107I GGYRCC 1 cut(s) 248
BspTNI GGTCTC 1 cut(s) 15
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 4 cut(s) 244, 272, 286, 361
BssMI GATC 3 cut(s) 163, 281, 463
BssNI GRCGYC 2 cut(s) 189, 249
Bst4CI ACNGT 3 cut(s) 290, 358, 458
BstACI GRCGYC 2 cut(s) 189, 249
BstC8I GCNNGC 3 cut(s) 179, 315, 368
BstDEI CTNAG 3 cut(s) 129, 297, 492
BstDSI CCRYGG 3 cut(s) 272, 286, 361
BstF5I GGATG 2 cut(s) 192, 481
BstFNI CGCG 4 cut(s) 37, 93, 274, 363
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 3 cut(s) 39, 95, 251
BstKTI GATC 3 cut(s) 166, 284, 466
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 3 cut(s) 163, 281, 463
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 356
BstSCI CCNGG 1 cut(s) 244
BstUI CGCG 4 cut(s) 37, 93, 274, 363
BstV1I GCAGC 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 2 cut(s) 370, 416
BtgI CCRYGG 3 cut(s) 272, 286, 361
BtsCI GGATG 2 cut(s) 192, 481
BtsIMutI CAGTG 2 cut(s) 404, 463
Cac8I GCNNGC 3 cut(s) 179, 315, 368
CfoI GCGC 3 cut(s) 39, 95, 251
Cfr13I GGNCC 1 cut(s) 262
Cfr42I CCGCGG 2 cut(s) 275, 364
CseI GACGC 1 cut(s) 197
CviAII CATG 3 cut(s) 119, 343, 392
CviJI RGCY 9 cut(s) 133, 181, 232, 296, 301, 313, 366, 370, 416
CviKI_1 RGCY 9 cut(s) 133, 181, 232, 296, 301, 313, 366, 370, 416
DdeI CTNAG 3 cut(s) 129, 297, 492
DinI GGCGCC 1 cut(s) 250
DpnI GATC 3 cut(s) 165, 283, 465
DpnII GATC 3 cut(s) 163, 281, 463
EciI GGCGGA 1 cut(s) 208
Eco147I AGGCCT 1 cut(s) 416
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 1 cut(s) 15
Eco47I GGWCC 1 cut(s) 262
Eco88I CYCGRG 1 cut(s) 182
EcoO109I RGGNCCY 1 cut(s) 262
EcoT38I GRGCYC 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
FaeI CATG 3 cut(s) 122, 346, 395
FaiI YATR 4 cut(s) 120, 344, 393, 468
FaqI GGGAC 1 cut(s) 248
FatI CATG 3 cut(s) 118, 342, 391
FauI CCCGC 3 cut(s) 148, 163, 273
Fnu4HI GCNGC 4 cut(s) 269, 272, 364, 480
FokI GGATG 2 cut(s) 179, 488
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 4 cut(s) 269, 272, 364, 480
FspBI CTAG 2 cut(s) 279, 432
GlaI GCGC 3 cut(s) 38, 94, 250
GluI GCNGC 4 cut(s) 269, 272, 364, 480
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 2 cut(s) 370, 416
HapII CCGG 2 cut(s) 246, 425
HgaI GACGC 1 cut(s) 197
HhaI GCGC 3 cut(s) 39, 95, 251
Hin1I GRCGYC 2 cut(s) 189, 249
Hin1II CATG 3 cut(s) 122, 346, 395
Hin6I GCGC 3 cut(s) 37, 93, 249
HinP1I GCGC 3 cut(s) 37, 93, 249
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 311
HinfI GANTC 5 cut(s) 78, 146, 319, 338, 428
HpaII CCGG 2 cut(s) 246, 425
HphI GGTGA 2 cut(s) 19, 76
Hpy166II GTNNAC 1 cut(s) 327
Hpy188I TCNGA 2 cut(s) 475, 493
Hpy188III TCNNGA 4 cut(s) 75, 279, 307, 425
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 4 cut(s) 61, 64, 164, 308
HpyAV CCTTC 5 cut(s) 121, 247, 381, 427, 497
HpyCH4III ACNGT 3 cut(s) 290, 358, 458
HpyCH4IV ACGT 1 cut(s) 56
HpyCH4V TGCA 1 cut(s) 482
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 3 cut(s) 129, 297, 492
HpySE526I ACGT 1 cut(s) 56
Hsp92I GRCGYC 2 cut(s) 189, 249
Hsp92II CATG 3 cut(s) 122, 346, 395
HspAI GCGC 3 cut(s) 37, 93, 249
KasI GGCGCC 1 cut(s) 248
KflI GGGWCCC 1 cut(s) 262
Kpn2I TCCGGA 1 cut(s) 424
KspI CCGCGG 2 cut(s) 275, 364
Kzo9I GATC 3 cut(s) 163, 281, 463
LmnI GCTCC 2 cut(s) 237, 442
LpnPI CCDG 4 cut(s) 244, 259, 352, 438
Lsp1109I GCAGC 1 cut(s) 466
LweI GCATC 2 cut(s) 210, 466
MaeI CTAG 2 cut(s) 279, 432
MaeII ACGT 1 cut(s) 56
MalI GATC 3 cut(s) 165, 283, 465
MboI GATC 3 cut(s) 163, 281, 463
MboII GAAGA 2 cut(s) 57, 366
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 135
Mly113I GGCGCC 1 cut(s) 249
MlyI GAGTC 2 cut(s) 140, 347
MmeI TCCRAC 3 cut(s) 126, 432, 453
MroI TCCGGA 1 cut(s) 424
MslI CAYNNNNRTG 1 cut(s) 347
MspA1I CMGCKG 2 cut(s) 274, 363
MspI CCGG 2 cut(s) 246, 425
MspR9I CCNGG 1 cut(s) 246
MvnI CGCG 4 cut(s) 37, 93, 274, 363
MwoI GCNNNNNNNGC 1 cut(s) 248
NarI GGCGCC 1 cut(s) 249
NciI CCSGG 1 cut(s) 246
NdeII GATC 3 cut(s) 163, 281, 463
NlaIII CATG 3 cut(s) 122, 346, 395
NlaIV GGNNCC 4 cut(s) 233, 250, 263, 264
PaeR7I CTCGAG 1 cut(s) 182
PceI AGGCCT 1 cut(s) 416
PfeI GAWTC 3 cut(s) 78, 319, 428
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 4 cut(s) 270, 273, 365, 481
PleI GAGTC 2 cut(s) 140, 346
PluTI GGCGCC 1 cut(s) 252
PpsI GAGTC 2 cut(s) 140, 346
PpuMI RGGWCCY 1 cut(s) 262
PshAI GACNNNNGTC 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 262
PspN4I GGNNCC 4 cut(s) 233, 250, 263, 264
PspPI GGNCC 1 cut(s) 262
PspPPI RGGWCCY 1 cut(s) 262
PspXI VCTCGAGB 1 cut(s) 182
PsuI RGATCY 1 cut(s) 281
RseI CAYNNNNRTG 1 cut(s) 347
SacII CCGCGG 2 cut(s) 275, 364
SatI GCNGC 4 cut(s) 269, 272, 364, 480
Sau3AI GATC 3 cut(s) 163, 281, 463
Sau96I GGNCC 1 cut(s) 262
SchI GAGTC 2 cut(s) 140, 347
ScrFI CCNGG 1 cut(s) 246
SduI GDGCHC 1 cut(s) 135
SetI ASST 8 cut(s) 11, 45, 59, 108, 183, 303, 315, 452
SfaNI GCATC 2 cut(s) 210, 466
SfoI GGCGCC 1 cut(s) 250
Sfr274I CTCGAG 1 cut(s) 182
Sfr303I CCGCGG 2 cut(s) 275, 364
SgrBI CCGCGG 2 cut(s) 275, 364
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
SseBI AGGCCT 1 cut(s) 416
SspDI GGCGCC 1 cut(s) 248
SspMI CTAG 2 cut(s) 279, 432
StuI AGGCCT 1 cut(s) 416
StyD4I CCNGG 1 cut(s) 244
TaaI ACNGT 3 cut(s) 290, 358, 458
TaiI ACGT 1 cut(s) 59
TaqI TCGA 4 cut(s) 162, 183, 306, 347
TauI GCSGC 3 cut(s) 271, 274, 366
TfiI GAWTC 3 cut(s) 78, 319, 428
TscAI CASTG 2 cut(s) 411, 463
TseI GCWGC 1 cut(s) 479
TspDTI ATGAA 3 cut(s) 70, 376, 380
TspGWI ACGGA 2 cut(s) 312, 344
TspRI CASTG 2 cut(s) 411, 463
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 262
XbaI TCTAGA 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 182
XspI CTAG 2 cut(s) 279, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.