Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002459

Physical Location & Seq

Genomic Coordinates Reverse (-)

62235934 .. 62238035

Gene Structure 2102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG459300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCAAGGGCTCTCTCCCAAACCCTGACCCTGACCCTGACCCGCCACCTCTCCCCCAAAACGTCGTCGTCTTTTATAACCCTCCGCGCCCAATCCAACCTCCCCTTCCACTATGACCAATCCGATCCGTCCGCCGCCGACTCCTCCGCCGCCGTCGATCCCCTCCTCCGCAAGCTCGAGGACGCCATCCACCGCATCATCGTCCGCAAGTCCGCCCCCGATTGGCTCCCCTTCGTCCCCGGCGCCTCCTACTGGGTCCCGCCGCCGCGGTCCAGATCCCACGGCCTCGCCCAGCTCGTCGAGAAGCTCGCCAATCCCATGACAGAGGAGGAGTCCATGTCCATGACCACCGTTCGCGGCTGGCCTTCCTCCGCTTATTTCATTCAAGGTTCACCTCCACTGATGGAGGCATTCGTTCCGAAATCTGATAATGCGGAGCAAAGGTTGGATAGTGCCGATCATAAGTCGGATAATGCACCCAATTCTGAGGAGGAGGAAGAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

168

Amino Acids

18.54

Weight (kDa)

5.33

Isoelectric Point (pI)

74.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002459)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G16840 AT1G78890 AT1G78890
fragaria_vesca	FvH4_4g07330 FvH4_4g07330 FvH4_6g37060
malus_domestica	MD16G1249400.v1.1 MD17G1163800.v1.1
prunus_persica	Prupe.1G076200_v2.0.a1 Prupe.1G076200_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1 Prupe.3G021500_v2.0.a1
pyrus_communis	pycom09g08110 pycom13g21420 pycom16g20880 pycom17g15690
rosa_chinensis	RchiOBHm_Chr2g0149611 RchiOBHm_Chr4g0399691
rosa_laevigata	RLG00000009246 RLG00000020429
rosa_multiflora	Rmu_sc0001517.1_g000011 Rmu_sc0006867.1_g000026 Rmu_ssc0000118.1_g000021
rosa_roxburghii	Rroxscaffold_2G00097910 Rroxscaffold_5G00344610
rosa_rugosa	Rorug02G0413400 Rorug04G0018200.1
rosa_samantha	Rh2AG473600 Rh2BG485400 Rh2CG459300 Rh2DG494600 Rh4CG104600 Rh4DG088600
rosa_wichuraiana	Rw2G038610 Rw4G007910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	3 cut(s)	87, 268, 357
AclWI	GGATC	3 cut(s)	119, 152, 270
AcyI	GRCGYC	2 cut(s)	183, 243
AfiI	CCNNNNNNNGG	2 cut(s)	222, 252
AgsI	TTSAA	1 cut(s)	386
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	3 cut(s)	175, 295, 307
AluI	AGCT	3 cut(s)	175, 295, 307
AlwI	GGATC	3 cut(s)	119, 152, 270
Ama87I	CYCGRG	1 cut(s)	176
AoxI	GGCC	2 cut(s)	283, 362
AspLEI	GCGC	2 cut(s)	89, 245
AspS9I	GGNCC	2 cut(s)	256, 270
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	1 cut(s)	384
AvaI	CYCGRG	1 cut(s)	176
AvaII	GGWCC	2 cut(s)	256, 270
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	13
BccI	CCATC	2 cut(s)	194, 397
BceAI	ACGGC	2 cut(s)	137, 298
BcnI	CCSGG	1 cut(s)	240
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	5 cut(s)	135, 150, 263, 266, 358
BlsI	GCNGC	5 cut(s)	136, 151, 264, 267, 359
Bme1390I	CCNGG	1 cut(s)	240
Bme18I	GGWCC	2 cut(s)	256, 270
BmeT110I	CYCGRG	1 cut(s)	176
BmgT120I	GGNCC	2 cut(s)	256, 270
BmiI	GGNNCC	4 cut(s)	227, 244, 257, 258
BmrFI	CCNGG	1 cut(s)	240
BmrI	ACTGGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	262
BpuMI	CCSGG	1 cut(s)	240
BsaHI	GRCGYC	2 cut(s)	183, 243
BsaJI	CCNNGG	3 cut(s)	238, 266, 280
BsaXI	ACNNNNNCTCC	4 cut(s)	323, 353, 428, 458
Bsc4I	CCNNNNNNNGG	2 cut(s)	222, 252
Bse1I	ACTGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	238, 266, 280
BseGI	GGATG	1 cut(s)	186
BseLI	CCNNNNNNNGG	2 cut(s)	222, 252
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	6 cut(s)	133, 155, 341, 344, 503, 506
BseYI	CCCAGC	1 cut(s)	291
Bsh1236I	CGCG	3 cut(s)	87, 268, 357
BshFI	GGCC	2 cut(s)	285, 364
BshNI	GGYRCC	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	221, 242
BslI	CCNNNNNNNGG	2 cut(s)	222, 252
BsmFI	GGGAC	2 cut(s)	221, 242
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	285, 364
BsoBI	CYCGRG	1 cut(s)	176
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	124, 157, 275, 457
BspANI	GGCC	2 cut(s)	285, 364
BspCNI	CTCAG	1 cut(s)	478
BspFNI	CGCG	3 cut(s)	87, 268, 357
BspLI	GGNNCC	4 cut(s)	227, 244, 257, 258
BspPI	GGATC	3 cut(s)	119, 152, 270
BspT107I	GGYRCC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	238, 266, 280
BssMI	GATC	4 cut(s)	124, 157, 275, 457
BssNI	GRCGYC	2 cut(s)	183, 243
Bst4CI	ACNGT	1 cut(s)	352
BstACI	GRCGYC	2 cut(s)	183, 243
BstC8I	GCNNGC	3 cut(s)	173, 309, 362
BstDEI	CTNAG	1 cut(s)	486
BstDSI	CCRYGG	2 cut(s)	266, 280
BstF5I	GGATG	1 cut(s)	186
BstFNI	CGCG	3 cut(s)	87, 268, 357
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	89, 245
BstKTI	GATC	4 cut(s)	127, 160, 278, 460
BstMBI	GATC	4 cut(s)	124, 157, 275, 457
BstSCI	CCNGG	1 cut(s)	238
BstUI	CGCG	3 cut(s)	87, 268, 357
BstX2I	RGATCY	1 cut(s)	275
BstYI	RGATCY	1 cut(s)	275
BsuRI	GGCC	2 cut(s)	285, 364
BtgI	CCRYGG	2 cut(s)	266, 280
BtsCI	GGATG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	398
Cac8I	GCNNGC	3 cut(s)	173, 309, 362
CfoI	GCGC	2 cut(s)	89, 245
Cfr13I	GGNCC	2 cut(s)	256, 270
Cfr42I	CCGCGG	1 cut(s)	269
CseI	GACGC	1 cut(s)	191
CviAII	CATG	3 cut(s)	319, 337, 343
CviJI	RGCY	8 cut(s)	11, 175, 226, 285, 295, 307, 360, 364
CviKI_1	RGCY	8 cut(s)	11, 175, 226, 285, 295, 307, 360, 364
DdeI	CTNAG	1 cut(s)	486
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	4 cut(s)	126, 159, 277, 459
DpnII	GATC	4 cut(s)	124, 157, 275, 457
EciI	GGCGGA	3 cut(s)	121, 136, 202
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	256, 270
Eco88I	CYCGRG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	256
EcoT38I	GRGCYC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaeI	CATG	3 cut(s)	322, 340, 346
FaiI	YATR	6 cut(s)	77, 114, 320, 338, 344, 462
FaqI	GGGAC	2 cut(s)	221, 242
FatI	CATG	3 cut(s)	318, 336, 342
FauI	CCCGC	2 cut(s)	50, 267
Fnu4HI	GCNGC	5 cut(s)	135, 150, 263, 266, 358
FokI	GGATG	1 cut(s)	173
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	5 cut(s)	135, 150, 263, 266, 358
GlaI	GCGC	2 cut(s)	88, 244
GluI	GCNGC	5 cut(s)	135, 150, 263, 266, 358
GsaI	CCCAGC	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	285, 364
HapII	CCGG	1 cut(s)	240
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	2 cut(s)	89, 245
Hin1I	GRCGYC	2 cut(s)	183, 243
Hin1II	CATG	3 cut(s)	322, 340, 346
Hin6I	GCGC	2 cut(s)	87, 243
HinP1I	GCGC	2 cut(s)	87, 243
HinfI	GANTC	2 cut(s)	140, 332
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	384
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188I	TCNGA	5 cut(s)	124, 420, 427, 469, 487
Hpy188III	TCNNGA	2 cut(s)	273, 301
Hpy8I	GTNNAC	1 cut(s)	392
Hpy99I	CGWCG	4 cut(s)	67, 70, 158, 302
HpyAV	CCTTC	4 cut(s)	115, 241, 375, 494
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	1 cut(s)	476
HpyF3I	CTNAG	1 cut(s)	486
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	2 cut(s)	183, 243
Hsp92II	CATG	3 cut(s)	322, 340, 346
HspAI	GCGC	2 cut(s)	87, 243
KasI	GGCGCC	1 cut(s)	242
KflI	GGGWCCC	1 cut(s)	256
KspI	CCGCGG	1 cut(s)	269
Kzo9I	GATC	4 cut(s)	124, 157, 275, 457
LmnI	GCTCC	2 cut(s)	231, 436
LpnPI	CCDG	8 cut(s)	38, 44, 50, 238, 253, 286, 305, 346
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	1 cut(s)	62
MalI	GATC	4 cut(s)	126, 159, 277, 459
MboI	GATC	4 cut(s)	124, 157, 275, 457
MflI	RGATCY	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	481
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	134, 341
MmeI	TCCRAC	3 cut(s)	120, 426, 447
MslI	CAYNNNNRTG	1 cut(s)	341
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	240
Mva1269I	GAATGC	1 cut(s)	410
MvnI	CGCG	3 cut(s)	87, 268, 357
NarI	GGCGCC	1 cut(s)	243
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	4 cut(s)	124, 157, 275, 457
NlaIII	CATG	3 cut(s)	322, 340, 346
NlaIV	GGNNCC	4 cut(s)	227, 244, 257, 258
PaeR7I	CTCGAG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	294
PctI	GAATGC	1 cut(s)	410
PkrI	GCNGC	5 cut(s)	136, 151, 264, 267, 359
PleI	GAGTC	2 cut(s)	134, 340
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	2 cut(s)	134, 340
PpuMI	RGGWCCY	1 cut(s)	256
PsiI	TTATAA	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	291
PspN4I	GGNNCC	4 cut(s)	227, 244, 257, 258
PspPI	GGNCC	2 cut(s)	256, 270
PspPPI	RGGWCCY	1 cut(s)	256
PspXI	VCTCGAGB	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	275
RseI	CAYNNNNRTG	1 cut(s)	341
SacII	CCGCGG	1 cut(s)	269
SatI	GCNGC	5 cut(s)	135, 150, 263, 266, 358
Sau3AI	GATC	4 cut(s)	124, 157, 275, 457
Sau96I	GGNCC	2 cut(s)	256, 270
SchI	GAGTC	2 cut(s)	134, 341
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	9 cut(s)	51, 65, 102, 177, 297, 309, 391, 397, 446
SfaNI	GCATC	1 cut(s)	204
SfoI	GGCGCC	1 cut(s)	244
Sfr274I	CTCGAG	1 cut(s)	176
Sfr303I	CCGCGG	1 cut(s)	269
SgrBI	CCGCGG	1 cut(s)	269
SinI	GGWCC	2 cut(s)	256, 270
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	481
SspDI	GGCGCC	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	238
TaaI	ACNGT	1 cut(s)	352
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	156, 177, 300
TasI	AATT	1 cut(s)	481
TauI	GCSGC	5 cut(s)	137, 152, 265, 268, 360
TscAI	CASTG	1 cut(s)	405
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	405
VpaK11BI	GGWCC	2 cut(s)	256, 270
XhoI	CTCGAG	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.