AT1G17130

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006725
Physical Location & Seq
Forward (+)
5854093 .. 5856697
2605 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17130.1

Sequence Viewer

Length: 996 bp
ATGGGAGAACGGAAGGTGCTAAACAAGTATTATCCGCCGGACTTCGATCCTGCGAAGCTTCAACGGCTCCGGCGGCCGAAGAACCAGCAGATCAAGGTTCGTATGATGCTTCCAATGAGTGTCCGATGCGGTACCTGCGGAAACTATATCTACAAGGGAACCAAGTTCAATTCCCGTAAAGAAGACGTCATTGGCGAGACGTATCTCGGGATTCAAATATTTAGATTCTACTTCAAGTGCACCAAGTGCTCTGCAGAGCTGACTATGAAGACGGATCCACAAAATTCTGATTACATTGTCGAATCTGGGGCATCTCGAAATTATGAACCCTGGCGTGCAGAAGATGAGGAGGTTGATAAGGATAAACAGAAAAGAGATGCTGAGGAGATGGGGGACGCGATGAAGTCCTTGGAGAACAGAACTTTGGATTCTAAAAGAGAAATGGACATTATAGCTGCACTTGATGAAATGAAATCAATGAAGTCTAGACATGCTACTGTGAGTGTAGATGCAATGTTGGAGGCCTTGCAAAGAACAGGCGCTGAGAAGGTAAAACGAATAGAAGAAGAAGATGAAGCAGTTATAAAGTCGATATTTGGTAAACAGAAAGAAGTTATTAGGAGAATTGCAGATGAAGAAATTGATGATGATTATGATGATGATGATATCGATGATTATCCCAGCCTTCAGAAGGAGAAGAAAGGATCATCGTCAGATCTTTCAAAGAAGAGGAAGGCAACAGAAGTAAGTCCAAGCAACCCCACAGATATTTTGACTAGTTCTTCTGCAGAAAATCCGAAGGAGCCCAAGAAACAAGCTATCAGCAAACAACCCTTTAAATCCGTTCACATAAAAGTCATCAAGAAGCAACCTCAACCAACTTCATCGTCAACTCCGGCTCCTGCAAAACCAGAGGAGAAGAAGAGTGATGGTGCGGCTAACACCAGTTTAGCCTCTTTATTCCAGAATTATGGTAGTGATGAAGATGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

331

Amino Acids

37.64

Weight (kDa)

5.81

Isoelectric Point (pI)

52.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 9 - 315 1.7e-100 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AatII GACGTC 1 cut(s) 189
Acc36I ACCTGC 1 cut(s) 143
Acc65I GGTACC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 131
AccII CGCG 1 cut(s) 398
AciI CCGC 5 cut(s) 35, 73, 129, 138, 935
AclWI GGATC 4 cut(s) 41, 269, 282, 712
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 671
AcyI GRCGYC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 1 cut(s) 133
AfiI CCNNNNNNNGG 1 cut(s) 691
AgsI TTSAA 5 cut(s) 62, 169, 215, 235, 723
AhlI ACTAGT 1 cut(s) 776
AjnI CCWGG 1 cut(s) 329
AjuI GAANNNNNNNTTGG 4 cut(s) 174, 206, 407, 439
AluBI AGCT 4 cut(s) 58, 259, 455, 818
AluI AGCT 4 cut(s) 58, 259, 455, 818
Alw21I GWGCWC 2 cut(s) 242, 251
Alw26I GTCTC 1 cut(s) 191
Alw44I GTGCAC 1 cut(s) 238
AlwI GGATC 4 cut(s) 41, 269, 282, 712
AlwNI CAGNNNCTG 1 cut(s) 542
Ama87I CYCGRG 1 cut(s) 206
AoxI GGCC 2 cut(s) 74, 522
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 1 cut(s) 455
ApoI RAATTY 1 cut(s) 283
Asp718I GGTACC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 542
AvaI CYCGRG 1 cut(s) 206
BaeGI GKGCMC 1 cut(s) 242
BamHI GGATCC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 807
BbsI GAAGAC 2 cut(s) 189, 275
Bbv12I GWGCWC 2 cut(s) 242, 251
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 1 cut(s) 442
BccI CCATC 2 cut(s) 382, 923
BceAI ACGGC 1 cut(s) 80
BciT130I CCWGG 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 191
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 2 cut(s) 486, 777
BfmI CTRYAG 2 cut(s) 252, 786
BfoI RGCGCY 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 143
BglII AGATCT 1 cut(s) 715
BisI GCNGC 3 cut(s) 74, 456, 936
BlsI GCNGC 3 cut(s) 75, 457, 937
Bme1390I CCNGG 1 cut(s) 331
BmeT110I CYCGRG 1 cut(s) 206
BmiI GGNNCC 6 cut(s) 68, 133, 160, 276, 804, 900
BmrFI CCNGG 1 cut(s) 331
BmsI GCATC 5 cut(s) 96, 116, 320, 367, 499
BpiI GAAGAC 2 cut(s) 189, 275
Bpu10I CCTNAGC 1 cut(s) 381
Bsa29I ATCGAT 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 329, 408
BsaXI ACNNNNNCTCC 2 cut(s) 883, 913
Bsc4I CCNNNNNNNGG 1 cut(s) 691
Bse1I ACTGG 1 cut(s) 945
Bse3DI GCAATG 1 cut(s) 519
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 1 cut(s) 331
BseCI ATCGAT 1 cut(s) 669
BseDI CCNNGG 2 cut(s) 329, 408
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 1 cut(s) 691
BseMI GCAATG 1 cut(s) 519
BseMII CTCAG 2 cut(s) 372, 534
BseNI ACTGG 1 cut(s) 945
BseRI GAGGAG 3 cut(s) 362, 398, 929
BseSI GKGCMC 1 cut(s) 242
BseX3I CGGCCG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 442
BseYI CCCAGC 1 cut(s) 680
BsgI GTGCAG 2 cut(s) 357, 441
Bsh1236I CGCG 1 cut(s) 398
Bsh1285I CGRYCG 1 cut(s) 77
BshFI GGCC 2 cut(s) 76, 524
BshNI GGYRCC 1 cut(s) 131
BshVI ATCGAT 1 cut(s) 669
BsiEI CGRYCG 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 242, 251
BsiHKCI CYCGRG 1 cut(s) 206
BsiSI CCGG 3 cut(s) 38, 70, 896
BslFI GGGAC 1 cut(s) 407
BslI CCNNNNNNNGG 1 cut(s) 691
BsmAI GTCTC 1 cut(s) 191
BsmBI CGTCTC 1 cut(s) 191
BsmFI GGGAC 1 cut(s) 407
BsnI GGCC 2 cut(s) 76, 524
BsoBI CYCGRG 1 cut(s) 206
Bsp1286I GDGCHC 3 cut(s) 242, 251, 807
Bsp143I GATC 5 cut(s) 46, 90, 274, 704, 715
BspACI CCGC 5 cut(s) 35, 73, 129, 138, 935
BspANI GGCC 2 cut(s) 76, 524
BspCNI CTCAG 2 cut(s) 373, 535
BspDI ATCGAT 1 cut(s) 669
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 6 cut(s) 68, 133, 160, 276, 804, 900
BspMAI CTGCAG 2 cut(s) 256, 790
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 4 cut(s) 41, 269, 282, 712
BspT107I GGYRCC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 1 cut(s) 945
BssECI CCNNGG 2 cut(s) 329, 408
BssMI GATC 5 cut(s) 46, 90, 274, 704, 715
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 2 cut(s) 722, 917
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 2 cut(s) 381, 543
BstENI CCTNNNNNAGG 1 cut(s) 689
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 5 cut(s) 49, 93, 277, 707, 718
BstMAI GTCTC 1 cut(s) 191
BstMBI GATC 5 cut(s) 46, 90, 274, 704, 715
BstMCI CGRYCG 1 cut(s) 77
BstMWI GCNNNNNNNGC 4 cut(s) 64, 73, 135, 246
BstNI CCWGG 1 cut(s) 331
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 329
BstSFI CTRYAG 2 cut(s) 252, 786
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 442
BstV2I GAAGAC 2 cut(s) 189, 275
BstX2I RGATCY 2 cut(s) 274, 715
BstXI CCANNNNNNTGG 1 cut(s) 971
BstYI RGATCY 2 cut(s) 274, 715
BstZI CGGCCG 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 669
BsuRI GGCC 2 cut(s) 76, 524
BsuTUI ATCGAT 1 cut(s) 669
BtgZI GCGATG 1 cut(s) 413
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 1 cut(s) 336
CaiI CAGNNNCTG 1 cut(s) 542
CfoI GCGC 1 cut(s) 542
ClaI ATCGAT 1 cut(s) 669
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 132
CviAII CATG 1 cut(s) 491
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 2 cut(s) 381, 543
DpnI GATC 5 cut(s) 48, 92, 276, 706, 717
DpnII GATC 5 cut(s) 46, 90, 274, 704, 715
DraI TTTAAA 1 cut(s) 838
DraIII CACNNNGTG 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 74
EagI CGGCCG 1 cut(s) 74
Eam1104I CTCTTC 2 cut(s) 722, 917
EarI CTCTTC 2 cut(s) 722, 917
EciI GGCGGA 1 cut(s) 24
EclXI CGGCCG 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 408
Eco147I AGGCCT 1 cut(s) 524
Eco24I GRGCYC 1 cut(s) 807
Eco32I GATATC 1 cut(s) 667
Eco52I CGGCCG 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 671
Eco88I CYCGRG 1 cut(s) 206
EcoNI CCTNNNNNAGG 1 cut(s) 689
EcoRII CCWGG 1 cut(s) 329
EcoRV GATATC 1 cut(s) 667
EcoT14I CCWWGG 1 cut(s) 408
EcoT38I GRGCYC 1 cut(s) 807
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 1 cut(s) 494
FaqI GGGAC 1 cut(s) 407
FatI CATG 1 cut(s) 490
Fnu4HI GCNGC 3 cut(s) 74, 456, 936
FriOI GRGCYC 1 cut(s) 807
Fsp4HI GCNGC 3 cut(s) 74, 456, 936
FspBI CTAG 2 cut(s) 486, 777
GlaI GCGC 1 cut(s) 541
GluI GCNGC 3 cut(s) 74, 456, 936
GsaI CCCAGC 1 cut(s) 684
HaeII RGCGCY 1 cut(s) 543
HaeIII GGCC 2 cut(s) 76, 524
HapII CCGG 3 cut(s) 38, 70, 896
HgaI GACGC 1 cut(s) 404
HhaI GCGC 1 cut(s) 542
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 494
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 891
HindII GTYRAC 1 cut(s) 891
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 4 cut(s) 211, 225, 302, 428
HpaII CCGG 3 cut(s) 38, 70, 896
Hpy166II GTNNAC 4 cut(s) 240, 602, 847, 891
Hpy188I TCNGA 5 cut(s) 125, 289, 690, 715, 798
Hpy188III TCNNGA 5 cut(s) 208, 315, 486, 862, 964
Hpy8I GTNNAC 4 cut(s) 240, 602, 847, 891
HpyAV CCTTC 6 cut(s) 7, 541, 685, 695, 727, 793
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4IV ACGT 2 cut(s) 186, 200
HpyCH4V TGCA 9 cut(s) 240, 254, 338, 458, 512, 529, 629, 788, 905
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 73, 135, 246
HpyF3I CTNAG 2 cut(s) 381, 543
HpySE526I ACGT 2 cut(s) 186, 200
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 494
HspAI GCGC 1 cut(s) 540
KpnI GGTACC 1 cut(s) 135
Kzo9I GATC 5 cut(s) 46, 90, 274, 704, 715
LmnI GCTCC 3 cut(s) 72, 802, 904
Lsp1109I GCAGC 1 cut(s) 442
LweI GCATC 5 cut(s) 96, 116, 320, 367, 499
MaeI CTAG 2 cut(s) 486, 777
MaeII ACGT 2 cut(s) 186, 200
MalI GATC 5 cut(s) 48, 92, 276, 706, 717
MboI GATC 5 cut(s) 46, 90, 274, 704, 715
MflI RGATCY 2 cut(s) 274, 715
MhlI GDGCHC 3 cut(s) 242, 251, 807
MluCI AATT 6 cut(s) 169, 283, 319, 624, 639, 967
MmeI TCCRAC 1 cut(s) 498
MnlI CCTC 8 cut(s) 340, 343, 376, 514, 723, 882, 907, 964
MseI TTAA 1 cut(s) 837
MspI CCGG 3 cut(s) 38, 70, 896
MspR9I CCNGG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 4 cut(s) 64, 73, 135, 246
NdeII GATC 5 cut(s) 46, 90, 274, 704, 715
NlaIII CATG 1 cut(s) 494
NlaIV GGNNCC 6 cut(s) 68, 133, 160, 276, 804, 900
NspI RCATGY 1 cut(s) 494
PceI AGGCCT 1 cut(s) 524
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 4 cut(s) 211, 225, 302, 428
PkrI GCNGC 3 cut(s) 75, 457, 937
PsiI TTATAA 1 cut(s) 584
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 680
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 6 cut(s) 68, 133, 160, 276, 804, 900
PstI CTGCAG 2 cut(s) 256, 790
PstNI CAGNNNCTG 1 cut(s) 542
PsuI RGATCY 2 cut(s) 274, 715
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
SaqAI TTAA 1 cut(s) 837
SatI GCNGC 3 cut(s) 74, 456, 936
Sau3AI GATC 5 cut(s) 46, 90, 274, 704, 715
ScrFI CCNGG 1 cut(s) 331
SduI GDGCHC 3 cut(s) 242, 251, 807
SfaNI GCATC 5 cut(s) 96, 116, 320, 367, 499
SfcI CTRYAG 2 cut(s) 252, 786
SpeI ACTAGT 1 cut(s) 776
Sse9I AATT 6 cut(s) 169, 283, 319, 624, 639, 967
SseBI AGGCCT 1 cut(s) 524
SsiI CCGC 5 cut(s) 35, 73, 129, 138, 935
SspI AATATT 1 cut(s) 219
SspMI CTAG 2 cut(s) 486, 777
StuI AGGCCT 1 cut(s) 524
StyD4I CCNGG 1 cut(s) 329
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 1 cut(s) 499
TaiI ACGT 2 cut(s) 189, 203
TaqI TCGA 5 cut(s) 45, 300, 316, 590, 669
TasI AATT 6 cut(s) 169, 283, 319, 624, 639, 967
TauI GCSGC 2 cut(s) 76, 938
TfiI GAWTC 4 cut(s) 211, 225, 302, 428
Tru1I TTAA 1 cut(s) 837
Tru9I TTAA 1 cut(s) 837
TseI GCWGC 1 cut(s) 455
TspGWI ACGGA 3 cut(s) 25, 287, 832
VneI GTGCAC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 689
XapI RAATTY 1 cut(s) 283
XbaI TCTAGA 1 cut(s) 485
XceI RCATGY 1 cut(s) 494
XspI CTAG 2 cut(s) 486, 777
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.