Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Reverse (-)

20110558 .. 20113546

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g16900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGAGAACGTAAGGTTCTGAACAAGTACTATCCGCCGGACTTCGACCCTTCGAAGCTGCCCCGGATCAGGAGGCCGAAGAATCAACAGATAAAGGTGCGGATGATGCTTCCTATGAGCATTCGGTGCAACACCTGCGGCAATTACATCTACAAAGGCACCAAGTTCAATTCTCGCAAAGAAGATGTCGTTGGAGAGACGTATTTGGGAATTCAAATATTCAGATTTTACTTCAAATGTACCAAGTGCTCTGCGGAACTCGCGATGAAGACAGACCCACAGAATTCTGACTATGTTGTTGAGGCCGGTGCTACGCGTAATTTTGAACCCTGGCGCAATGAAGATGAGGAAGTAGATAAGGAGAAACAGAAAAGGGAGTCCGAAGAAATGGGAGATGCCATGAGAGCCTTGGAGAACAGAACACAGGATTCAAAGAGAGAGATGGACGTCATGGCTGCTTTGGATGAGATGAAGTCCATGAAGTCCAGGCATGCGACTGTGAGTGTGGATGCTATGTTGGAGGCTTTGAAACAAACTTCTGCCCAAAAGGAAAAAAGGATTGAAGACGAGGATGAAGCAGTCATAAAATCAATAGTATTCCATAACTCAAAAGATTATATTAAAAGGATTCATGATGAAGATTTAGATGATGAAGAAGATATGATTGAGCCTTTAAGTGGCAACGGCGAAACATCAACCCATAAATTGAAGCGGCAAAAGCTTACTCAAGGGCTTCCTAGCAATCCGACAGATTGGTTGACAAAAAGCAGTATTTCTGATGCCTCAAGCAACGGAGGGAATCGAAATACTTTCAAGTCTTCGAACGTTAGGGTTGCTGTAGTTAAGAAACCAGTTGTGGCTGAGGGTAAAATGCCGGCAGAACCAGAAGACAAGAAACAATTGGGAGAGGAGGTTCAAAATTCGAAAAAACCAAATGAGAAGAAACAAGAGGGAGAGAATAAAACCAGTGCTACAACCAATGTATTGCAATCATTGTGCCAAAACTACGATAGCGACGACAGCGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

344

Amino Acids

39.22

Weight (kDa)

5.86

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	2 cut(s)	263, 316
AciI	CCGC	5 cut(s)	35, 100, 138, 254, 712
AclI	AACGTT	1 cut(s)	825
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	3 cut(s)	210, 283, 919
AcyI	GRCGYC	1 cut(s)	447
AfaI	GTAC	2 cut(s)	29, 241
AfiI	CCNNNNNNNGG	2 cut(s)	69, 677
AflIII	ACRYGT	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	329, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AloI	GAACNNNNNNTCC	2 cut(s)	897, 929
AluBI	AGCT	2 cut(s)	58, 721
AluI	AGCT	2 cut(s)	58, 721
Alw21I	GWGCWC	1 cut(s)	251
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	2 cut(s)	74, 303
ApeKI	GCWGC	2 cut(s)	58, 455
ApoI	RAATTY	3 cut(s)	210, 283, 919
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspLEI	GCGC	1 cut(s)	336
AsuC2I	CCSGG	1 cut(s)	64
AsuII	TTCGAA	3 cut(s)	53, 821, 923
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	4 cut(s)	275, 570, 810, 894
Bbv12I	GWGCWC	1 cut(s)	251
BbvCI	CCTCAGC	1 cut(s)	861
BbvI	GCAGC	2 cut(s)	45, 442
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	700
BciT130I	CCWGG	2 cut(s)	331, 487
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	738
BfmI	CTRYAG	1 cut(s)	837
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	59, 139, 456, 713
BlsI	GCNGC	4 cut(s)	60, 140, 457, 714
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	64, 331, 487
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	64, 331, 487
BmsI	GCATC	4 cut(s)	96, 385, 499, 769
BpiI	GAAGAC	4 cut(s)	275, 570, 810, 894
Bpu10I	CCTNAGC	1 cut(s)	861
Bpu14I	TTCGAA	3 cut(s)	53, 821, 923
BpuEI	CTTGAG	2 cut(s)	711, 769
BpuMI	CCSGG	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	62, 329, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	897, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 677
Bse118I	RCCGGY	2 cut(s)	305, 874
Bse1I	ACTGG	2 cut(s)	851, 966
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	2 cut(s)	331, 487
BseDI	CCNNGG	3 cut(s)	62, 329, 408
BseGI	GGATG	4 cut(s)	108, 469, 514, 577
BseLI	CCNNNNNNNGG	2 cut(s)	69, 677
BseMI	GCAATG	1 cut(s)	343
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	2 cut(s)	851, 966
BseRI	GAGGAG	1 cut(s)	923
BseXI	GCAGC	2 cut(s)	45, 442
Bsh1236I	CGCG	2 cut(s)	263, 316
BshFI	GGCC	2 cut(s)	76, 305
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	1 cut(s)	251
BsiSI	CCGG	4 cut(s)	38, 64, 306, 875
BslI	CCNNNNNNNGG	2 cut(s)	69, 677
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	76, 305
Bsp119I	TTCGAA	3 cut(s)	53, 821, 923
Bsp1286I	GDGCHC	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	5 cut(s)	35, 100, 138, 254, 712
BspANI	GGCC	2 cut(s)	76, 305
BspCNI	CTCAG	1 cut(s)	853
BspFNI	CGCG	2 cut(s)	263, 316
BspHI	TCATGA	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	74
BspT104I	TTCGAA	3 cut(s)	53, 821, 923
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	305, 874
BsrI	ACTGG	2 cut(s)	851, 966
BssAI	RCCGGY	2 cut(s)	305, 874
BssECI	CCNNGG	3 cut(s)	62, 329, 408
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	447
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	331, 487
Bst4CI	ACNGT	1 cut(s)	499
BstACI	GRCGYC	1 cut(s)	447
BstAPI	GCANNNNNTGC	2 cut(s)	126, 135
BstBI	TTCGAA	3 cut(s)	53, 821, 923
BstC8I	GCNNGC	2 cut(s)	492, 876
BstDEI	CTNAG	1 cut(s)	861
BstF5I	GGATG	4 cut(s)	108, 469, 514, 577
BstFNI	CGCG	2 cut(s)	263, 316
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	7 cut(s)	106, 126, 135, 260, 404, 718, 1020
BstNI	CCWGG	2 cut(s)	331, 487
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	62, 329, 485
BstSFI	CTRYAG	1 cut(s)	837
BstUI	CGCG	2 cut(s)	263, 316
BstV1I	GCAGC	2 cut(s)	45, 442
BstV2I	GAAGAC	4 cut(s)	275, 570, 810, 894
BsuRI	GGCC	2 cut(s)	76, 305
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	4 cut(s)	108, 469, 514, 577
BtsIMutI	CAGTG	1 cut(s)	973
BtuMI	TCGCGA	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	492, 876
CciI	TCATGA	1 cut(s)	631
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	2 cut(s)	305, 874
Csp6I	GTAC	2 cut(s)	28, 240
CviAII	CATG	5 cut(s)	400, 451, 478, 491, 632
CviQI	GTAC	2 cut(s)	28, 240
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	408
EcoRI	GAATTC	2 cut(s)	210, 283
EcoRII	CCWGG	2 cut(s)	329, 485
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	5 cut(s)	403, 454, 481, 494, 635
FatI	CATG	5 cut(s)	399, 450, 477, 490, 631
Fnu4HI	GCNGC	4 cut(s)	59, 139, 456, 713
FokI	GGATG	4 cut(s)	115, 476, 521, 584
Fsp4HI	GCNGC	4 cut(s)	59, 139, 456, 713
FspBI	CTAG	1 cut(s)	738
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	4 cut(s)	59, 139, 456, 713
HaeIII	GGCC	2 cut(s)	76, 305
HapII	CCGG	4 cut(s)	38, 64, 306, 875
HhaI	GCGC	1 cut(s)	336
Hin1I	GRCGYC	1 cut(s)	447
Hin1II	CATG	5 cut(s)	403, 454, 481, 494, 635
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	1 cut(s)	759
HindII	GTYRAC	1 cut(s)	759
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	5 cut(s)	82, 377, 428, 628, 799
HpaII	CCGG	4 cut(s)	38, 64, 306, 875
Hpy166II	GTNNAC	1 cut(s)	759
Hpy188I	TCNGA	6 cut(s)	21, 224, 289, 382, 747, 778
Hpy188III	TCNNGA	3 cut(s)	70, 262, 632
Hpy8I	GTNNAC	1 cut(s)	759
Hpy99I	CGWCG	1 cut(s)	1019
HpyAV	CCTTC	1 cut(s)	60
HpyCH4III	ACNGT	1 cut(s)	499
HpyCH4IV	ACGT	4 cut(s)	10, 200, 447, 825
HpyCH4V	TGCA	2 cut(s)	129, 988
HpyF10VI	GCNNNNNNNGC	7 cut(s)	106, 126, 135, 260, 404, 718, 1020
HpyF3I	CTNAG	1 cut(s)	861
HpySE526I	ACGT	4 cut(s)	10, 200, 447, 825
Hsp92I	GRCGYC	1 cut(s)	447
Hsp92II	CATG	5 cut(s)	403, 454, 481, 494, 635
HspAI	GCGC	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	874
KroNI	GCCGGC	1 cut(s)	876
Kzo9I	GATC	1 cut(s)	66
Lsp1109I	GCAGC	2 cut(s)	45, 442
LweI	GCATC	4 cut(s)	96, 385, 499, 769
MaeI	CTAG	1 cut(s)	738
MaeII	ACGT	4 cut(s)	10, 200, 447, 825
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MfeI	CAATTG	1 cut(s)	899
MhlI	GDGCHC	1 cut(s)	251
MluCI	AATT	8 cut(s)	142, 169, 210, 283, 319, 704, 899, 919
MluI	ACGCGT	1 cut(s)	314
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	3 cut(s)	172, 498, 770
MroNI	GCCGGC	1 cut(s)	874
MseI	TTAA	3 cut(s)	621, 674, 843
MspI	CCGG	4 cut(s)	38, 64, 306, 875
MspR9I	CCNGG	3 cut(s)	64, 331, 487
MunI	CAATTG	1 cut(s)	899
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	2 cut(s)	331, 487
MvnI	CGCG	2 cut(s)	263, 316
MwoI	GCNNNNNNNGC	7 cut(s)	106, 126, 135, 260, 404, 718, 1020
NaeI	GCCGGC	1 cut(s)	876
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	1 cut(s)	66
NgoMIV	GCCGGC	1 cut(s)	874
NlaIII	CATG	5 cut(s)	403, 454, 481, 494, 635
NlaIV	GGNNCC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	263
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	3 cut(s)	53, 821, 923
PaeI	GCATGC	1 cut(s)	494
PagI	TCATGA	1 cut(s)	631
PaqCI	CACCTGC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	1014
PctI	GAATGC	1 cut(s)	120
PdiI	GCCGGC	1 cut(s)	876
PfeI	GAWTC	4 cut(s)	82, 428, 628, 799
PkrI	GCNGC	4 cut(s)	60, 140, 457, 714
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp1406I	AACGTT	1 cut(s)	825
Psp6I	CCWGG	2 cut(s)	329, 485
PspGI	CCWGG	2 cut(s)	329, 485
PspN4I	GGNNCC	1 cut(s)	160
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	2 cut(s)	29, 241
RsaNI	GTAC	2 cut(s)	28, 240
SaqAI	TTAA	3 cut(s)	621, 674, 843
SatI	GCNGC	4 cut(s)	59, 139, 456, 713
Sau3AI	GATC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	64, 331, 487
SduI	GDGCHC	1 cut(s)	251
SfaNI	GCATC	4 cut(s)	96, 385, 499, 769
SfcI	CTRYAG	1 cut(s)	837
SfuI	TTCGAA	3 cut(s)	53, 821, 923
SmlI	CTYRAG	2 cut(s)	726, 784
SmoI	CTYRAG	2 cut(s)	726, 784
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	8 cut(s)	142, 169, 210, 283, 319, 704, 899, 919
SsiI	CCGC	5 cut(s)	35, 100, 138, 254, 712
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	738
StyD4I	CCNGG	3 cut(s)	62, 329, 485
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	499
TaiI	ACGT	4 cut(s)	13, 203, 450, 828
TaqI	TCGA	5 cut(s)	45, 53, 802, 821, 923
TasI	AATT	8 cut(s)	142, 169, 210, 283, 319, 704, 899, 919
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	2 cut(s)	141, 715
TfiI	GAWTC	4 cut(s)	82, 428, 628, 799
Tru1I	TTAA	3 cut(s)	621, 674, 843
Tru9I	TTAA	3 cut(s)	621, 674, 843
TscAI	CASTG	1 cut(s)	973
TseI	GCWGC	2 cut(s)	58, 455
TspDTI	ATGAA	8 cut(s)	281, 354, 485, 494, 588, 620, 651, 666
TspGWI	ACGGA	1 cut(s)	807
TspRI	CASTG	1 cut(s)	973
XapI	RAATTY	3 cut(s)	210, 283, 919
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	738
ZraI	GACGTC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.