Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Reverse (-)

22435149 .. 22437822

Gene Structure 2674 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19490.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGAGCACGTAAGGTTCTTAACAAGTACTATCCGCCGGACTTTGACCCCTCGAAGCTGCCCAGGATCAGGAGGCCAAAGAATCAACAGATAAAGGTGCGGATGATGCTTCCGATGAGCATTCGCTGCAACACCTGCGGCAATTACATCTACAAAGGCACCAAGTTTAATTCTCGCAAAGAAGATGTTGTTGGAGAGACGTATTTGGGAATTCAAATATTCAGATTTTACTTCAAATGTACCAAGTGCTCTGCCGAGCTCGCGATGAAGACAGACCCCCAGAATTCTGACTATGTTGTTGAGGCCGGTGCGACACGGAATTTTGAACCCTGGCGCAATGAAGATGAGGAAGTAGATAAGGAGAAACAGAAAAGGGAGTCCGAAGAAATGGGAGATGCCATGAGAGCCTTGGAGAATAGAACACAGGATTCAAAAAGAGAGATGGACGTCATGGCTGCCTTGGATGAGATGAAGTCCATGAAGTCCAGGCATGCGACTGTGAGTGTGGATGCTATGTTGGAGGCTTTGAAACAAACATCCGCGCAAAAGGAAAAAAGGATTGAAGAGGAGGATGAAGCAGTCATAAAATCAATAGTATTCCATAACTCAAAAGATTATATCACAAGAATTCACGATGAAGATTTAGATGATGAAGAAGATATGATTGAGCCTTTAAGTGGCAACGGTGAAACCTCACTGAAGACCCTCAACTTGCAGCGGAAAAAGCTTACTCACGGGCGTCCTGACAATTCAACAGATTGGTTGACAAACAGCAGTATTTCTGATAGAGGTAGGCTCAGAAGCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

270

Amino Acids

31.21

Weight (kDa)

6.49

Isoelectric Point (pI)

44.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
AatII	GACGTC	1 cut(s)	450
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	2 cut(s)	263, 542
AciI	CCGC	5 cut(s)	35, 100, 138, 540, 718
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	4 cut(s)	210, 283, 319, 627
AcuI	CTGAAG	1 cut(s)	719
AcyI	GRCGYC	2 cut(s)	447, 739
AfaI	GTAC	2 cut(s)	29, 241
AfiI	CCNNNNNNNGG	2 cut(s)	69, 677
AgsI	TTSAA	7 cut(s)	215, 235, 326, 432, 529, 563, 753
AjnI	CCWGG	3 cut(s)	62, 329, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	4 cut(s)	58, 259, 727, 804
AluI	AGCT	4 cut(s)	58, 259, 727, 804
Alw21I	GWGCWC	3 cut(s)	10, 251, 261
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	74
AlwNI	CAGNNNCTG	1 cut(s)	804
AoxI	GGCC	2 cut(s)	74, 303
ApeKI	GCWGC	5 cut(s)	58, 126, 455, 715, 804
ApoI	RAATTY	4 cut(s)	210, 283, 319, 627
AspLEI	GCGC	2 cut(s)	336, 544
AsuHPI	GGTGA	1 cut(s)	698
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	2 cut(s)	275, 707
Bbv12I	GWGCWC	3 cut(s)	10, 251, 261
BbvI	GCAGC	5 cut(s)	45, 113, 442, 727, 791
BccI	CCATC	1 cut(s)	436
BciT130I	CCWGG	3 cut(s)	64, 331, 487
BcoDI	GTCTC	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	6 cut(s)	59, 127, 139, 456, 716, 805
BlsI	GCNGC	6 cut(s)	60, 128, 140, 457, 717, 806
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	64, 331, 487
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	3 cut(s)	64, 331, 487
BmsI	GCATC	3 cut(s)	96, 385, 499
BpiI	GAAGAC	2 cut(s)	275, 707
BplI	GAGNNNNNCTC	1 cut(s)	780
BsaAI	YACGTR	1 cut(s)	11
BsaHI	GRCGYC	2 cut(s)	447, 739
BsaJI	CCNNGG	4 cut(s)	62, 329, 408, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 677
Bse118I	RCCGGY	1 cut(s)	305
Bse3DI	GCAATG	1 cut(s)	343
BseBI	CCWGG	3 cut(s)	64, 331, 487
BseDI	CCNNGG	4 cut(s)	62, 329, 408, 459
BseGI	GGATG	5 cut(s)	108, 469, 514, 536, 577
BseLI	CCNNNNNNNGG	2 cut(s)	69, 677
BseMI	GCAATG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	5 cut(s)	45, 113, 442, 727, 791
Bsh1236I	CGCG	2 cut(s)	263, 542
BshFI	GGCC	2 cut(s)	76, 305
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	3 cut(s)	10, 251, 261
BsiSI	CCGG	2 cut(s)	38, 306
BslI	CCNNNNNNNGG	2 cut(s)	69, 677
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	2 cut(s)	76, 305
Bsp1286I	GDGCHC	3 cut(s)	10, 251, 261
Bsp143I	GATC	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	5 cut(s)	35, 100, 138, 540, 718
BspANI	GGCC	2 cut(s)	76, 305
BspCNI	CTCAG	1 cut(s)	810
BspFNI	CGCG	2 cut(s)	263, 542
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	62, 329, 408, 459
BssMI	GATC	1 cut(s)	66
BssNI	GRCGYC	2 cut(s)	447, 739
BssT1I	CCWWGG	2 cut(s)	408, 459
Bst2UI	CCWGG	3 cut(s)	64, 331, 487
Bst4CI	ACNGT	2 cut(s)	499, 686
Bst6I	CTCTTC	1 cut(s)	558
BstACI	GRCGYC	2 cut(s)	447, 739
BstAPI	GCANNNNNTGC	2 cut(s)	126, 135
BstBAI	YACGTR	1 cut(s)	11
BstC8I	GCNNGC	2 cut(s)	261, 492
BstDEI	CTNAG	1 cut(s)	797
BstF5I	GGATG	5 cut(s)	108, 469, 514, 536, 577
BstFNI	CGCG	2 cut(s)	263, 542
BstHHI	GCGC	2 cut(s)	336, 544
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	6 cut(s)	106, 126, 135, 260, 404, 724
BstNI	CCWGG	3 cut(s)	64, 331, 487
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	62, 329, 485
BstUI	CGCG	2 cut(s)	263, 542
BstV1I	GCAGC	5 cut(s)	45, 113, 442, 727, 791
BstV2I	GAAGAC	2 cut(s)	275, 707
BsuRI	GGCC	2 cut(s)	76, 305
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	5 cut(s)	108, 469, 514, 536, 577
BtsIMutI	CAGTG	1 cut(s)	695
BtuMI	TCGCGA	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	261, 492
CaiI	CAGNNNCTG	1 cut(s)	804
CfoI	GCGC	2 cut(s)	336, 544
Cfr10I	RCCGGY	1 cut(s)	305
CseI	GACGC	1 cut(s)	728
Csp6I	GTAC	2 cut(s)	28, 240
CviAII	CATG	4 cut(s)	400, 451, 478, 491
CviQI	GTAC	2 cut(s)	28, 240
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	2 cut(s)	408, 459
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	259
EcoRI	GAATTC	3 cut(s)	210, 283, 627
EcoRII	CCWGG	3 cut(s)	62, 329, 485
EcoT14I	CCWWGG	2 cut(s)	408, 459
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	2 cut(s)	408, 459
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	4 cut(s)	403, 454, 481, 494
FatI	CATG	4 cut(s)	399, 450, 477, 490
Fnu4HI	GCNGC	6 cut(s)	59, 127, 139, 456, 716, 805
FokI	GGATG	5 cut(s)	115, 476, 521, 523, 584
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	6 cut(s)	59, 127, 139, 456, 716, 805
GlaI	GCGC	2 cut(s)	335, 543
GluI	GCNGC	6 cut(s)	59, 127, 139, 456, 716, 805
HaeIII	GGCC	2 cut(s)	76, 305
HapII	CCGG	2 cut(s)	38, 306
HgaI	GACGC	1 cut(s)	728
HhaI	GCGC	2 cut(s)	336, 544
Hin1I	GRCGYC	2 cut(s)	447, 739
Hin1II	CATG	4 cut(s)	403, 454, 481, 494
Hin6I	GCGC	2 cut(s)	334, 542
HinP1I	GCGC	2 cut(s)	334, 542
HincII	GTYRAC	1 cut(s)	765
HindII	GTYRAC	1 cut(s)	765
HindIII	AAGCTT	1 cut(s)	725
HinfI	GANTC	3 cut(s)	82, 377, 428
HpaII	CCGG	2 cut(s)	38, 306
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	6 cut(s)	114, 224, 289, 382, 784, 800
Hpy188III	TCNNGA	4 cut(s)	70, 262, 632, 743
Hpy8I	GTNNAC	1 cut(s)	765
HpyCH4III	ACNGT	2 cut(s)	499, 686
HpyCH4IV	ACGT	3 cut(s)	10, 200, 447
HpyCH4V	TGCA	2 cut(s)	129, 715
HpyF10VI	GCNNNNNNNGC	6 cut(s)	106, 126, 135, 260, 404, 724
HpyF3I	CTNAG	1 cut(s)	797
HpySE526I	ACGT	3 cut(s)	10, 200, 447
Hsp92I	GRCGYC	2 cut(s)	447, 739
Hsp92II	CATG	4 cut(s)	403, 454, 481, 494
HspAI	GCGC	2 cut(s)	334, 542
Kzo9I	GATC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	5
Lsp1109I	GCAGC	5 cut(s)	45, 113, 442, 727, 791
LweI	GCATC	3 cut(s)	96, 385, 499
MaeII	ACGT	3 cut(s)	10, 200, 447
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	9 cut(s)	194, 280, 353, 395, 575, 650, 665, 668, 712
MhlI	GDGCHC	3 cut(s)	10, 251, 261
MluCI	AATT	7 cut(s)	142, 169, 210, 283, 319, 627, 748
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	2 cut(s)	172, 498
MseI	TTAA	3 cut(s)	21, 168, 674
MspA1I	CMGCKG	1 cut(s)	718
MspI	CCGG	2 cut(s)	38, 306
MspR9I	CCNGG	3 cut(s)	64, 331, 487
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	3 cut(s)	64, 331, 487
MvnI	CGCG	2 cut(s)	263, 542
MwoI	GCNNNNNNNGC	6 cut(s)	106, 126, 135, 260, 404, 724
NdeII	GATC	1 cut(s)	66
NlaIII	CATG	4 cut(s)	403, 454, 481, 494
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	280
NruI	TCGCGA	1 cut(s)	263
NspI	RCATGY	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	82, 428
PkrI	GCNGC	6 cut(s)	60, 128, 140, 457, 717, 806
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	11
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	62, 329, 485
PspGI	CCWGG	3 cut(s)	62, 329, 485
PspN4I	GGNNCC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	804
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	2 cut(s)	29, 241
RsaNI	GTAC	2 cut(s)	28, 240
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	21, 168, 674
SatI	GCNGC	6 cut(s)	59, 127, 139, 456, 716, 805
Sau3AI	GATC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	64, 331, 487
SduI	GDGCHC	3 cut(s)	10, 251, 261
SfaNI	GCATC	3 cut(s)	96, 385, 499
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	7 cut(s)	142, 169, 210, 283, 319, 627, 748
SsiI	CCGC	5 cut(s)	35, 100, 138, 540, 718
SspI	AATATT	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	62, 329, 485
StyI	CCWWGG	2 cut(s)	408, 459
TaaI	ACNGT	2 cut(s)	499, 686
TaiI	ACGT	3 cut(s)	13, 203, 450
TaqI	TCGA	1 cut(s)	53
TasI	AATT	7 cut(s)	142, 169, 210, 283, 319, 627, 748
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	82, 428
Tru1I	TTAA	3 cut(s)	21, 168, 674
Tru9I	TTAA	3 cut(s)	21, 168, 674
TscAI	CASTG	1 cut(s)	702
TseI	GCWGC	5 cut(s)	58, 126, 455, 715, 804
TspDTI	ATGAA	7 cut(s)	281, 354, 485, 494, 588, 651, 666
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	1 cut(s)	702
XapI	RAATTY	4 cut(s)	210, 283, 319, 627
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
ZraI	GACGTC	1 cut(s)	448
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.