Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Forward (+)

72867 .. 76233

Gene Structure 3367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgggagagcgtaaggttctcaacaagtactacccgccggacttcgacccgtccaagctgccccgagtccggcggcccaagaaccagcagattaaggtccgtatgatgcttccgatgagcatcagatgcaacacctgcggcaactacatctacaagggcaccaaattcaactcccggaaagaagatgtcgtcggcgagacgtacttgggaattcaaatctttagattttacttcaagtgcaccaagtgctcggcggagcttgcgatgaagacggacccgcagaactcagactatgtggtggaggccggggctacacgaaatttcgaaccttggcgtaatgaggatgaggaagtggataaggagaagcagaagagggaggccgaagaaatgggagatgccatgaaatctttggagaacagaaccttggattcgaaaagagagatggatatccttgccgctttggatgagatgaagtccatgaagtccaggcatgcaactgtgagtgtggatgagatgttggaggctttacaacatacggttgcgcacaaggagaaaaggctggaagaggaggatgaagcagtcataaaatcgatcgtattccataactcaaaagattatgttcgaaggattgatgatgatgatttagatgatgatgaagatttattagagccgttaagtggcaatggtgaaacgtctaatcatctgtcaaagaaacaaaagcttactcaagataatagcaaaccaacagatttgttgacaaaaaccagtatttctgatagctcaagcagcagaggaaaacagaatggttcagaagattctaaaatcattttcacgtctccaactgttaggctttcagtagttaagaaaccagtggtggctaaagttaacaatttggcaaaagtggacgagaaagaagttggagaggagtctaaaagtttgactaaagatgagaaagaagaggatagcgagaataagaccgacggtggaagcaacgtattacaatcgctgttccaaaactacaacagtgatgatagtgatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

347

Amino Acids

39.63

Weight (kDa)

5.21

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc16I	TGCGCA	1 cut(s)	543
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	158
AciI	CCGC	6 cut(s)	35, 73, 138, 254, 278, 456
AcsI	RAATTY	3 cut(s)	164, 210, 319
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	29, 203
AfiI	CCNNNNNNNGG	2 cut(s)	69, 677
AgsI	TTSAA	3 cut(s)	169, 215, 235
AjiI	CACGTC	1 cut(s)	834
AjnI	CCWGG	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	4 cut(s)	58, 259, 721, 780
AluI	AGCT	4 cut(s)	58, 259, 721, 780
Alw21I	GWGCWC	2 cut(s)	242, 251
Alw26I	GTCTC	2 cut(s)	191, 840
Alw44I	GTGCAC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	74, 303, 378
ApaLI	GTGCAC	1 cut(s)	238
ApeKI	GCWGC	2 cut(s)	58, 786
ApoI	RAATTY	3 cut(s)	164, 210, 319
AspLEI	GCGC	1 cut(s)	544
AspS9I	GGNCC	3 cut(s)	75, 97, 274
AsuC2I	CCSGG	2 cut(s)	175, 307
AsuHPI	GGTGA	1 cut(s)	698
AsuII	TTCGAA	3 cut(s)	324, 431, 622
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	97, 274
BaeGI	GKGCMC	2 cut(s)	161, 242
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	242, 251
BbvI	GCAGC	2 cut(s)	45, 798
BccI	CCATC	1 cut(s)	436
BceAI	ACGGC	1 cut(s)	655
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	175, 307
BcoDI	GTCTC	2 cut(s)	191, 840
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	5 cut(s)	59, 74, 139, 456, 787
BlsI	GCNGC	5 cut(s)	60, 75, 140, 457, 788
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	3 cut(s)	175, 307, 487
Bme18I	GGWCC	2 cut(s)	97, 274
BmeT110I	CYCGRG	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	834
BmgT120I	GGNCC	3 cut(s)	75, 97, 274
BmiI	GGNNCC	2 cut(s)	160, 276
BmrFI	CCNGG	3 cut(s)	175, 307, 487
BmsI	GCATC	4 cut(s)	96, 116, 129, 385
BpiI	GAAGAC	1 cut(s)	275
Bpu14I	TTCGAA	3 cut(s)	324, 431, 622
BpuEI	CTTGAG	2 cut(s)	711, 766
BpuMI	CCSGG	2 cut(s)	175, 307
Bsa29I	ATCGAT	1 cut(s)	590
BsaBI	GATNNNNATC	2 cut(s)	119, 446
BsaJI	CCNNGG	3 cut(s)	306, 329, 423
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 677
Bse1I	ACTGG	2 cut(s)	765, 869
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	2 cut(s)	119, 446
BseBI	CCWGG	1 cut(s)	487
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	3 cut(s)	306, 329, 423
BseGI	GGATG	4 cut(s)	349, 469, 514, 577
BseJI	GATNNNNATC	2 cut(s)	119, 446
BseLI	CCNNNNNNNGG	2 cut(s)	69, 677
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	2 cut(s)	765, 869
BseRI	GAGGAG	2 cut(s)	581, 938
BseSI	GKGCMC	2 cut(s)	161, 242
BseXI	GCAGC	2 cut(s)	45, 798
Bsh1285I	CGRYCG	1 cut(s)	594
BshFI	GGCC	3 cut(s)	76, 305, 380
BshNI	GGYRCC	1 cut(s)	158
BshVI	ATCGAT	1 cut(s)	590
BsiEI	CGRYCG	1 cut(s)	594
BsiHKAI	GWGCWC	2 cut(s)	242, 251
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	4 cut(s)	38, 70, 175, 306
BslI	CCNNNNNNNGG	2 cut(s)	69, 677
BsmAI	GTCTC	2 cut(s)	191, 840
BsmBI	CGTCTC	2 cut(s)	191, 840
BsnI	GGCC	3 cut(s)	76, 305, 380
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	3 cut(s)	324, 431, 622
Bsp1286I	GDGCHC	3 cut(s)	161, 242, 251
Bsp143I	GATC	1 cut(s)	591
BspACI	CCGC	6 cut(s)	35, 73, 138, 254, 278, 456
BspANI	GGCC	3 cut(s)	76, 305, 380
BspCNI	CTCAG	1 cut(s)	299
BspDI	ATCGAT	1 cut(s)	590
BspLI	GGNNCC	2 cut(s)	160, 276
BspMI	ACCTGC	1 cut(s)	143
BspT104I	TTCGAA	3 cut(s)	324, 431, 622
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	765, 869
BssECI	CCNNGG	3 cut(s)	306, 329, 423
BssMI	GATC	1 cut(s)	591
BssT1I	CCWWGG	2 cut(s)	329, 423
Bst2UI	CCWGG	1 cut(s)	487
Bst4CI	ACNGT	5 cut(s)	499, 538, 844, 983, 1025
Bst6I	CTCTTC	3 cut(s)	365, 558, 951
BstAPI	GCANNNNNTGC	3 cut(s)	126, 135, 246
BstBI	TTCGAA	3 cut(s)	324, 431, 622
BstC8I	GCNNGC	2 cut(s)	261, 492
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	4 cut(s)	349, 469, 514, 577
BstHHI	GCGC	1 cut(s)	544
BstKTI	GATC	1 cut(s)	594
BstMAI	GTCTC	2 cut(s)	191, 840
BstMBI	GATC	1 cut(s)	591
BstMCI	CGRYCG	1 cut(s)	594
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 135, 246, 260, 786
BstNI	CCWGG	1 cut(s)	487
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	173, 305, 485
BstSLI	GKGCMC	2 cut(s)	161, 242
BstV1I	GCAGC	2 cut(s)	45, 798
BstV2I	GAAGAC	1 cut(s)	275
Bsu15I	ATCGAT	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	76, 305, 380
BsuTUI	ATCGAT	1 cut(s)	590
BtgZI	GCGATG	1 cut(s)	278
BtrI	CACGTC	1 cut(s)	834
BtsCI	GGATG	4 cut(s)	349, 469, 514, 577
BtsIMutI	CAGTG	2 cut(s)	876, 1030
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	261, 492
CfoI	GCGC	1 cut(s)	544
Cfr13I	GGNCC	3 cut(s)	75, 97, 274
ClaI	ATCGAT	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	28, 202
CviAII	CATG	3 cut(s)	400, 478, 491
CviQI	GTAC	2 cut(s)	28, 202
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	1 cut(s)	593
DpnII	GATC	1 cut(s)	591
DraIII	CACNNNGTG	1 cut(s)	246
Eam1104I	CTCTTC	3 cut(s)	365, 558, 951
EarI	CTCTTC	3 cut(s)	365, 558, 951
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	329, 423
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	97, 274
Eco88I	CYCGRG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	485
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	329, 423
ErhI	CCWWGG	2 cut(s)	329, 423
Esp3I	CGTCTC	2 cut(s)	191, 840
FaeI	CATG	3 cut(s)	403, 481, 494
FaiI	YATR	9 cut(s)	104, 294, 401, 479, 492, 534, 584, 603, 618
FatI	CATG	3 cut(s)	399, 477, 490
FauI	CCCGC	2 cut(s)	42, 285
Fnu4HI	GCNGC	5 cut(s)	59, 74, 139, 456, 787
FokI	GGATG	4 cut(s)	356, 476, 521, 584
Fsp4HI	GCNGC	5 cut(s)	59, 74, 139, 456, 787
FspI	TGCGCA	1 cut(s)	543
GlaI	GCGC	1 cut(s)	543
GluI	GCNGC	5 cut(s)	59, 74, 139, 456, 787
HaeIII	GGCC	3 cut(s)	76, 305, 380
HapII	CCGG	4 cut(s)	38, 70, 175, 306
HhaI	GCGC	1 cut(s)	544
Hin1II	CATG	3 cut(s)	403, 481, 494
Hin6I	GCGC	1 cut(s)	542
HinP1I	GCGC	1 cut(s)	542
HincII	GTYRAC	2 cut(s)	756, 886
HindII	GTYRAC	2 cut(s)	756, 886
HindIII	AAGCTT	1 cut(s)	719
HinfI	GANTC	4 cut(s)	66, 428, 815, 926
HpaI	GTTAAC	1 cut(s)	886
HpaII	CCGG	4 cut(s)	38, 70, 175, 306
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	4 cut(s)	240, 756, 886, 904
Hpy188I	TCNGA	5 cut(s)	114, 125, 289, 775, 811
Hpy188III	TCNNGA	1 cut(s)	728
Hpy8I	GTNNAC	4 cut(s)	240, 756, 886, 904
Hpy99I	CGWCG	2 cut(s)	194, 983
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	5 cut(s)	499, 538, 844, 983, 1025
HpyCH4IV	ACGT	4 cut(s)	200, 692, 833, 993
HpyCH4V	TGCA	3 cut(s)	129, 240, 494
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 135, 246, 260, 786
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	4 cut(s)	200, 692, 833, 993
Hsp92II	CATG	3 cut(s)	403, 481, 494
HspAI	GCGC	1 cut(s)	542
KspAI	GTTAAC	1 cut(s)	886
Kzo9I	GATC	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	45, 798
LweI	GCATC	4 cut(s)	96, 116, 129, 385
MaeII	ACGT	4 cut(s)	200, 692, 833, 993
MalI	GATC	1 cut(s)	593
MboI	GATC	1 cut(s)	591
MboII	GAAGA	8 cut(s)	194, 280, 382, 395, 575, 668, 824, 968
MhlI	GDGCHC	3 cut(s)	161, 242, 251
MluCI	AATT	4 cut(s)	164, 210, 319, 889
MlyI	GAGTC	2 cut(s)	75, 935
MmeI	TCCRAC	3 cut(s)	498, 863, 898
MseI	TTAA	4 cut(s)	93, 674, 861, 885
MspI	CCGG	4 cut(s)	38, 70, 175, 306
MspR9I	CCNGG	3 cut(s)	175, 307, 487
MvaI	CCWGG	1 cut(s)	487
MwoI	GCNNNNNNNGC	5 cut(s)	126, 135, 246, 260, 786
NciI	CCSGG	2 cut(s)	175, 307
NdeII	GATC	1 cut(s)	591
NlaIII	CATG	3 cut(s)	403, 481, 494
NlaIV	GGNNCC	2 cut(s)	160, 276
NmeAIII	GCCGAG	1 cut(s)	230
NsbI	TGCGCA	1 cut(s)	543
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	3 cut(s)	324, 431, 622
PaeI	GCATGC	1 cut(s)	494
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	2 cut(s)	428, 815
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	5 cut(s)	60, 75, 140, 457, 788
Ple19I	CGATCG	1 cut(s)	594
PleI	GAGTC	2 cut(s)	74, 934
PpsI	GAGTC	2 cut(s)	74, 934
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	2 cut(s)	160, 276
PspPI	GGNCC	3 cut(s)	75, 97, 274
PvuI	CGATCG	1 cut(s)	594
RsaI	GTAC	2 cut(s)	29, 203
RsaNI	GTAC	2 cut(s)	28, 202
SaqAI	TTAA	4 cut(s)	93, 674, 861, 885
SatI	GCNGC	5 cut(s)	59, 74, 139, 456, 787
Sau3AI	GATC	1 cut(s)	591
Sau96I	GGNCC	3 cut(s)	75, 97, 274
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	2 cut(s)	75, 935
ScrFI	CCNGG	3 cut(s)	175, 307, 487
SduI	GDGCHC	3 cut(s)	161, 242, 251
SfaNI	GCATC	4 cut(s)	96, 116, 129, 385
SfuI	TTCGAA	3 cut(s)	324, 431, 622
SinI	GGWCC	2 cut(s)	97, 274
SmlI	CTYRAG	2 cut(s)	726, 781
SmoI	CTYRAG	2 cut(s)	726, 781
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	4 cut(s)	164, 210, 319, 889
SsiI	CCGC	6 cut(s)	35, 73, 138, 254, 278, 456
StyD4I	CCNGG	3 cut(s)	173, 305, 485
StyI	CCWWGG	2 cut(s)	329, 423
TaaI	ACNGT	5 cut(s)	499, 538, 844, 983, 1025
TaiI	ACGT	4 cut(s)	203, 695, 836, 996
TaqI	TCGA	5 cut(s)	45, 324, 431, 590, 622
TaqII	GACCGA	1 cut(s)	992
TasI	AATT	4 cut(s)	164, 210, 319, 889
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	3 cut(s)	76, 141, 458
TfiI	GAWTC	2 cut(s)	428, 815
Tru1I	TTAA	4 cut(s)	93, 674, 861, 885
Tru9I	TTAA	4 cut(s)	93, 674, 861, 885
TscAI	CASTG	2 cut(s)	876, 1030
TseI	GCWGC	2 cut(s)	58, 786
TspDTI	ATGAA	6 cut(s)	281, 416, 485, 494, 588, 669
TspGWI	ACGGA	2 cut(s)	89, 287
TspRI	CASTG	2 cut(s)	876, 1030
VneI	GTGCAC	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	97, 274
XapI	RAATTY	3 cut(s)	164, 210, 319
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.