FvH4_1g15490

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0006725
Physical Location & Seq
Forward (+)
8790695 .. 8792110
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g15490.t1

Sequence Viewer

Length: 1020 bp
ATGGGAGAGCGTAAGGTTATCAACAAGTACTACCCGCCGGACTTCAACCCGTCGAAGCTTCCCCGAGTCCGGCGACCCAAGAACCAGCAGATCAAGGTCCGTATGATGCTTCCGATGAGCATCCGATGCAAAACCTGCGGCAACTACATCTACAAAGGCACCAAGTTCAACTCGCGGAAAGAAGACGTCGTCGGCGAGACGTATTTGGGAATTCAAATATTTAGGTTTTACTTCAAGTGCACCAAGTGCTCAGCGGAGCTTGCGATGAAGACGGACCCGCAGAACTCAGACTATGTGATGGAGGCCGGGGCGACTCGAAATTTCGAGCCTTGGCGAAATGCGGATGAGGAAGCCGATAAGGAGAAGCAGAATAGGGAGTCCGAAGAGATGGGAGATGCTATGAAGTCTTTGGAGAACAGAACCTTGGATTCCAAGAGAGAGATGGATATTCGTGCTGCTTTGGATGAGATGAAGTCCATGAAGTCCAGGCATGCAACTGTGAGTGTGGATGAGATGTTGACGGCTTTGCAACGTACGGTTGCGCACAAGGAGGAGGAAAGGATGGAAGAGGAGGATGAAGCAATCATAAAATCAATCGTGTTCCGTAACTCAAAAGATTATGTGCGAAGGATTCATGATGATGATTTAGATGATGATGAAGATTTACTAAAAGCGGCAAAGAGACAAAAGCTTAATCGAGATAATAGCAAACCAACAGATGCATTGACGAAAATCAGTATTTTTGATAGCTGGAGCAGCAGAGGAAAACAGAATGGTTCACAAGATTCTAATATCATTTTCAAGTCTCCAATGGTTAGGCTGTCTGTAGTTAAGAAACCAGTGGTGGCTAAAGTTAACAATTTGGTGAAGGCAGAAGACGAGAAACAAGCTGGTGAGGAGTTTAAAAGTTCGACTAAACCAGATGAGAGAGAACACGACGACGAGAATAATATCAACAGTGGAAGCAACGTATTACAATCATTATGCCAAAACTACGACAGTGATGATAGTGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

340

Amino Acids

39.2

Weight (kDa)

5.85

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 9 - 336 7.6e-100 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
Acc16I TGCGCA 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 158
AccII CGCG 1 cut(s) 175
AciI CCGC 7 cut(s) 35, 138, 175, 254, 278, 341, 674
AcsI RAATTY 2 cut(s) 210, 319
AcyI GRCGYC 1 cut(s) 186
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 2 cut(s) 29, 535
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 5 cut(s) 46, 169, 215, 235, 802
AjnI CCWGG 1 cut(s) 485
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 5 cut(s) 58, 259, 691, 750, 890
AluI AGCT 5 cut(s) 58, 259, 691, 750, 890
Alw21I GWGCWC 2 cut(s) 242, 251
Alw26I GTCTC 3 cut(s) 191, 676, 810
Alw44I GTGCAC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 303
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 455, 756
ApoI RAATTY 2 cut(s) 210, 319
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 2 cut(s) 97, 274
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 2 cut(s) 877, 905
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 97, 274
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 158
BbsI GAAGAC 3 cut(s) 189, 275, 882
Bbv12I GWGCWC 2 cut(s) 242, 251
BbvI GCAGC 2 cut(s) 442, 768
BccI CCATC 4 cut(s) 292, 382, 436, 556
BceAI ACGGC 1 cut(s) 537
BciT130I CCWGG 1 cut(s) 487
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 3 cut(s) 191, 676, 810
BfmI CTRYAG 1 cut(s) 825
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 4 cut(s) 139, 456, 675, 757
BlpI GCTNAGC 1 cut(s) 250
BlsI GCNGC 4 cut(s) 140, 457, 676, 758
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 2 cut(s) 307, 487
Bme18I GGWCC 2 cut(s) 97, 274
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 97, 274
BmiI GGNNCC 2 cut(s) 160, 276
BmrFI CCNGG 2 cut(s) 307, 487
BmsI GCATC 5 cut(s) 96, 116, 129, 385, 709
BpiI GAAGAC 3 cut(s) 189, 275, 882
BpmI CTGGAG 1 cut(s) 772
Bpu1102I GCTNAGC 1 cut(s) 250
BpuMI CCSGG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 119
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 3 cut(s) 306, 329, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 839
Bse8I GATNNNNATC 1 cut(s) 119
BseBI CCWGG 1 cut(s) 487
BseDI CCNNGG 3 cut(s) 306, 329, 423
BseGI GGATG 6 cut(s) 120, 349, 469, 514, 567, 580
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 264, 300
BseNI ACTGG 1 cut(s) 839
BseRI GAGGAG 3 cut(s) 566, 584, 911
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 2 cut(s) 442, 768
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 305
BshNI GGYRCC 1 cut(s) 158
BsiHKAI GWGCWC 2 cut(s) 242, 251
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 38, 70, 306
BsiWI CGTACG 1 cut(s) 533
BslI CCNNNNNNNGG 1 cut(s) 69
BsmAI GTCTC 3 cut(s) 191, 676, 810
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 1 cut(s) 305
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 242, 251
Bsp143I GATC 1 cut(s) 90
Bsp1720I GCTNAGC 1 cut(s) 250
BspACI CCGC 7 cut(s) 35, 138, 175, 254, 278, 341, 674
BspANI GGCC 1 cut(s) 305
BspCNI CTCAG 2 cut(s) 263, 299
BspFNI CGCG 1 cut(s) 175
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 160, 276
BspMI ACCTGC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 158
BsrI ACTGG 1 cut(s) 839
BssECI CCNNGG 3 cut(s) 306, 329, 423
BssMI GATC 1 cut(s) 90
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 2 cut(s) 329, 423
Bst2UI CCWGG 1 cut(s) 487
Bst4CI ACNGT 4 cut(s) 499, 538, 959, 1001
Bst6I CTCTTC 2 cut(s) 378, 561
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 3 cut(s) 126, 135, 246
BstC8I GCNNGC 2 cut(s) 261, 492
BstDEI CTNAG 2 cut(s) 250, 286
BstF5I GGATG 6 cut(s) 120, 349, 469, 514, 567, 580
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 3 cut(s) 191, 676, 810
BstMBI GATC 1 cut(s) 90
BstMWI GCNNNNNNNGC 5 cut(s) 126, 135, 246, 260, 756
BstNI CCWGG 1 cut(s) 487
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 2 cut(s) 305, 485
BstSFI CTRYAG 1 cut(s) 825
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 442, 768
BstV2I GAAGAC 3 cut(s) 189, 275, 882
BsuRI GGCC 1 cut(s) 305
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 6 cut(s) 120, 349, 469, 514, 567, 580
BtsIMutI CAGTG 3 cut(s) 846, 964, 1006
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 261, 492
CciI TCATGA 1 cut(s) 634
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 2 cut(s) 97, 274
Csp6I GTAC 2 cut(s) 28, 534
CviAII CATG 3 cut(s) 478, 491, 635
CviQI GTAC 2 cut(s) 28, 534
DdeI CTNAG 2 cut(s) 250, 286
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
DraI TTTAAA 1 cut(s) 904
DraIII CACNNNGTG 1 cut(s) 246
Eam1104I CTCTTC 2 cut(s) 378, 561
EarI CTCTTC 2 cut(s) 378, 561
Eco130I CCWWGG 2 cut(s) 329, 423
Eco47I GGWCC 2 cut(s) 97, 274
Eco88I CYCGRG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 485
EcoT14I CCWWGG 2 cut(s) 329, 423
EcoT22I ATGCAT 1 cut(s) 724
ErhI CCWWGG 2 cut(s) 329, 423
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 3 cut(s) 481, 494, 638
FaiI YATR 9 cut(s) 104, 294, 401, 479, 492, 587, 621, 636, 985
FatI CATG 3 cut(s) 477, 490, 634
FauI CCCGC 2 cut(s) 42, 285
Fnu4HI GCNGC 4 cut(s) 139, 456, 675, 757
FokI GGATG 6 cut(s) 107, 356, 476, 521, 574, 587
Fsp4HI GCNGC 4 cut(s) 139, 456, 675, 757
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 1 cut(s) 543
GluI GCNGC 4 cut(s) 139, 456, 675, 757
GsuI CTGGAG 1 cut(s) 772
HaeIII GGCC 1 cut(s) 305
HapII CCGG 3 cut(s) 38, 70, 306
HhaI GCGC 1 cut(s) 544
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 481, 494, 638
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 2 cut(s) 519, 856
HindII GTYRAC 2 cut(s) 519, 856
HindIII AAGCTT 2 cut(s) 56, 689
HinfI GANTC 6 cut(s) 66, 313, 377, 428, 631, 785
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 3 cut(s) 38, 70, 306
HphI GGTGA 2 cut(s) 877, 905
Hpy166II GTNNAC 4 cut(s) 240, 519, 779, 856
Hpy188I TCNGA 4 cut(s) 114, 125, 289, 382
Hpy188III TCNNGA 2 cut(s) 635, 698
Hpy8I GTNNAC 4 cut(s) 240, 519, 779, 856
Hpy99I CGWCG 5 cut(s) 55, 191, 194, 941, 944
HpyAV CCTTC 2 cut(s) 621, 862
HpyCH4III ACNGT 4 cut(s) 499, 538, 959, 1001
HpyCH4IV ACGT 4 cut(s) 186, 200, 532, 969
HpyCH4V TGCA 5 cut(s) 129, 240, 494, 529, 722
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 135, 246, 260, 756
HpyF3I CTNAG 2 cut(s) 250, 286
HpySE526I ACGT 4 cut(s) 186, 200, 532, 969
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 481, 494, 638
HspAI GCGC 1 cut(s) 542
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 1 cut(s) 90
LmnI GCTCC 2 cut(s) 256, 753
Lsp1109I GCAGC 2 cut(s) 442, 768
LweI GCATC 5 cut(s) 96, 116, 129, 385, 709
MaeII ACGT 4 cut(s) 186, 200, 532, 969
MaeIII GTNAC 1 cut(s) 605
MalI GATC 1 cut(s) 92
MboI GATC 1 cut(s) 90
MboII GAAGA 6 cut(s) 194, 280, 395, 578, 671, 887
MhlI GDGCHC 2 cut(s) 242, 251
MluCI AATT 3 cut(s) 210, 319, 859
MlyI GAGTC 3 cut(s) 75, 307, 386
MnlI CCTC 8 cut(s) 295, 340, 544, 547, 562, 565, 755, 889
Mph1103I ATGCAT 1 cut(s) 724
MseI TTAA 4 cut(s) 693, 831, 855, 903
MslI CAYNNNNRTG 1 cut(s) 639
MspA1I CMGCKG 1 cut(s) 254
MspI CCGG 3 cut(s) 38, 70, 306
MspR9I CCNGG 2 cut(s) 307, 487
MvaI CCWGG 1 cut(s) 487
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 5 cut(s) 126, 135, 246, 260, 756
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 90
NlaIII CATG 3 cut(s) 481, 494, 638
NlaIV GGNNCC 2 cut(s) 160, 276
NsbI TGCGCA 1 cut(s) 543
NsiI ATGCAT 1 cut(s) 724
NspI RCATGY 1 cut(s) 494
PaeI GCATGC 1 cut(s) 494
PagI TCATGA 1 cut(s) 634
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 3 cut(s) 428, 631, 785
Pfl23II CGTACG 1 cut(s) 533
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 140, 457, 676, 758
PleI GAGTC 3 cut(s) 74, 307, 385
PpsI GAGTC 3 cut(s) 74, 307, 385
Psp6I CCWGG 1 cut(s) 485
PspGI CCWGG 1 cut(s) 485
PspLI CGTACG 1 cut(s) 533
PspN4I GGNNCC 2 cut(s) 160, 276
PspPI GGNCC 2 cut(s) 97, 274
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 2 cut(s) 29, 535
RsaNI GTAC 2 cut(s) 28, 534
RseI CAYNNNNRTG 1 cut(s) 639
SaqAI TTAA 4 cut(s) 693, 831, 855, 903
SatI GCNGC 4 cut(s) 139, 456, 675, 757
Sau3AI GATC 1 cut(s) 90
Sau96I GGNCC 2 cut(s) 97, 274
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 3 cut(s) 75, 307, 386
ScrFI CCNGG 2 cut(s) 307, 487
SduI GDGCHC 2 cut(s) 242, 251
SfaNI GCATC 5 cut(s) 96, 116, 129, 385, 709
SfcI CTRYAG 1 cut(s) 825
SinI GGWCC 2 cut(s) 97, 274
SmiMI CAYNNNNRTG 1 cut(s) 639
SphI GCATGC 1 cut(s) 494
Sse9I AATT 3 cut(s) 210, 319, 859
SsiI CCGC 7 cut(s) 35, 138, 175, 254, 278, 341, 674
SspI AATATT 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 305, 485
StyI CCWWGG 2 cut(s) 329, 423
TaaI ACNGT 4 cut(s) 499, 538, 959, 1001
TaiI ACGT 4 cut(s) 189, 203, 535, 972
TaqI TCGA 5 cut(s) 53, 316, 324, 697, 911
TasI AATT 3 cut(s) 210, 319, 859
TatI WGTACW 1 cut(s) 27
TauI GCSGC 2 cut(s) 141, 677
TfiI GAWTC 3 cut(s) 428, 631, 785
Tru1I TTAA 4 cut(s) 693, 831, 855, 903
Tru9I TTAA 4 cut(s) 693, 831, 855, 903
TscAI CASTG 3 cut(s) 846, 964, 1006
TseI GCWGC 2 cut(s) 455, 756
TspDTI ATGAA 7 cut(s) 281, 416, 485, 494, 591, 623, 672
TspGWI ACGGA 3 cut(s) 89, 287, 593
TspRI CASTG 3 cut(s) 846, 964, 1006
Tth111I GACNNNGTC 1 cut(s) 188
VneI GTGCAC 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 97, 274
XapI RAATTY 2 cut(s) 210, 319
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 29
Zsp2I ATGCAT 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.