RLG00000033035

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006725
Physical Location & Seq
Forward (+)
22450803 .. 22454491
3689 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033035

Sequence Viewer

Length: 1044 bp
ATGGGAGAGCGTAAGGTTCTCAACAAGTACTACCCGCCGGACTTCGACCCGTCCAAGCTGCCCCGAGTCCGGCGGCCCAAGAACCAGCAGATTAAGGTCCGTATGATGCTTCCGATGAGCATCAGATGCAACACCTGCGGCAACTACATCTACAAAGGCACCAAATTCAACTCGCGGAAAGAAGATGTCGTCGGCGAGACGTACTTGGGAATTCAAATCTTTAGATTTTACTTCAAGTGCACCAAGTGCTCGGCGGAGCTTGCGATGAAGACGGACCCGCAGAACTCAGACTATGTGGTGGAGGCCGGGGCTACACGAAATTTCGAACCTTGGCGTAATGAGGATGAGGAAGTGGATAAGGAGAAGCAGAAGAGGGAGGCCGAAGAAATGGGAGATGCCATGAAATCTTTGGAGAACAGAACCTTGGATTCGAAAAGAGAGATGGATATACTTGCCGCTTTGGATGAGATGAAGTCCATGAAGTCTAGGCATGCAACTGTGAGTGTGGATGAGATGTTGGAGGCTTTGCAACATACGGTTGCGCACAAGGAGAAAAGGCTGGAAGAGGAGGACGAAGCAGTCATAAAATCGATCGTATTCCATAACTCAAAAGATTATGTTCGAAGGATTGATGATGATGATTTAGATGATGATGAAGATTTATTACAGCCGTTAAGTGGCAATGGTGAAATGTCTAATCATCTGTCAAAGAAACAAAAGCTTTCTCAAGATAATAGCAAACCAACAGATTCGTTGACAAAAACCAGTATATCTGATAGCTCAAGCAGCAGAGGAAAACAGAATGGTTCAGAAGATTCTAAAATCATTTTTAAGTCTCCAACTGTTAGGCTTTCAGTAGTTAAGAAACCAGTGGTGGCTAAAGTTAACAACTTGGCAAAAGTGGACGAGAAAGAAGTTGGAGAGGAGTCAAAAAGTTTGACTAAAGATGAGAAAGAAGAGGATGGCAAGAATAAGACCGACGGTGGAAGCAACGTATTACAATCGCTATTCCAAAACTACAACAGTGATGATAGTGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

348

Amino Acids

39.62

Weight (kDa)

5.48

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 9 - 344 9.2e-103 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
AasI GACNNNNNNGTC 1 cut(s) 578
Acc16I TGCGCA 1 cut(s) 543
Acc36I ACCTGC 1 cut(s) 143
AccB1I GGYRCC 1 cut(s) 158
AccII CGCG 1 cut(s) 175
AciI CCGC 7 cut(s) 35, 73, 138, 175, 254, 278, 456
AcsI RAATTY 3 cut(s) 164, 210, 319
AdeI CACNNNGTG 1 cut(s) 246
AfaI GTAC 2 cut(s) 29, 203
AfiI CCNNNNNNNGG 2 cut(s) 69, 677
AgsI TTSAA 3 cut(s) 169, 215, 235
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 4 cut(s) 58, 259, 721, 780
AluI AGCT 4 cut(s) 58, 259, 721, 780
Alw21I GWGCWC 2 cut(s) 242, 251
Alw26I GTCTC 2 cut(s) 191, 840
Alw44I GTGCAC 1 cut(s) 238
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 3 cut(s) 74, 303, 378
ApaLI GTGCAC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 58, 786
ApoI RAATTY 3 cut(s) 164, 210, 319
AspLEI GCGC 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 75, 97, 274
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 1 cut(s) 698
AsuII TTCGAA 3 cut(s) 324, 431, 622
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 2 cut(s) 97, 274
BaeGI GKGCMC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 648, 680
BbsI GAAGAC 1 cut(s) 275
Bbv12I GWGCWC 2 cut(s) 242, 251
BbvI GCAGC 2 cut(s) 45, 798
BccI CCATC 2 cut(s) 436, 956
BceAI ACGGC 1 cut(s) 655
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 191, 840
BfaI CTAG 1 cut(s) 486
BfuAI ACCTGC 1 cut(s) 143
BisI GCNGC 5 cut(s) 59, 74, 139, 456, 787
BlsI GCNGC 5 cut(s) 60, 75, 140, 457, 788
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 2 cut(s) 97, 274
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 3 cut(s) 75, 97, 274
BmiI GGNNCC 2 cut(s) 160, 276
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 4 cut(s) 96, 116, 129, 385
BpiI GAAGAC 1 cut(s) 275
Bpu14I TTCGAA 3 cut(s) 324, 431, 622
BpuEI CTTGAG 2 cut(s) 711, 766
BpuMI CCSGG 1 cut(s) 307
Bsa29I ATCGAT 1 cut(s) 590
BsaBI GATNNNNATC 1 cut(s) 119
BsaJI CCNNGG 3 cut(s) 306, 329, 423
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 677
Bse1I ACTGG 2 cut(s) 765, 869
Bse3DI GCAATG 1 cut(s) 688
Bse8I GATNNNNATC 1 cut(s) 119
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 3 cut(s) 306, 329, 423
BseGI GGATG 4 cut(s) 349, 469, 514, 967
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 2 cut(s) 69, 677
BseMI GCAATG 1 cut(s) 688
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 765, 869
BseRI GAGGAG 2 cut(s) 581, 938
BseSI GKGCMC 1 cut(s) 242
BseXI GCAGC 2 cut(s) 45, 798
Bsh1236I CGCG 1 cut(s) 175
Bsh1285I CGRYCG 1 cut(s) 594
BshFI GGCC 3 cut(s) 76, 305, 380
BshNI GGYRCC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 590
BsiEI CGRYCG 1 cut(s) 594
BsiHKAI GWGCWC 2 cut(s) 242, 251
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 38, 70, 306
BslI CCNNNNNNNGG 2 cut(s) 69, 677
BsmAI GTCTC 2 cut(s) 191, 840
BsmBI CGTCTC 1 cut(s) 191
BsnI GGCC 3 cut(s) 76, 305, 380
BsoBI CYCGRG 1 cut(s) 63
Bsp119I TTCGAA 3 cut(s) 324, 431, 622
Bsp1286I GDGCHC 2 cut(s) 242, 251
Bsp143I GATC 1 cut(s) 591
BspACI CCGC 7 cut(s) 35, 73, 138, 175, 254, 278, 456
BspANI GGCC 3 cut(s) 76, 305, 380
BspCNI CTCAG 1 cut(s) 299
BspDI ATCGAT 1 cut(s) 590
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 2 cut(s) 160, 276
BspMI ACCTGC 1 cut(s) 143
BspT104I TTCGAA 3 cut(s) 324, 431, 622
BspT107I GGYRCC 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 688
BsrI ACTGG 2 cut(s) 765, 869
BssECI CCNNGG 3 cut(s) 306, 329, 423
BssMI GATC 1 cut(s) 591
BssT1I CCWWGG 2 cut(s) 329, 423
Bst4CI ACNGT 5 cut(s) 499, 538, 844, 983, 1025
Bst6I CTCTTC 3 cut(s) 365, 558, 951
BstAPI GCANNNNNTGC 3 cut(s) 126, 135, 246
BstBI TTCGAA 3 cut(s) 324, 431, 622
BstC8I GCNNGC 2 cut(s) 261, 492
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 4 cut(s) 349, 469, 514, 967
BstFNI CGCG 1 cut(s) 175
BstHHI GCGC 1 cut(s) 544
BstKTI GATC 1 cut(s) 594
BstMAI GTCTC 2 cut(s) 191, 840
BstMBI GATC 1 cut(s) 591
BstMCI CGRYCG 1 cut(s) 594
BstMWI GCNNNNNNNGC 5 cut(s) 126, 135, 246, 260, 786
BstNSI RCATGY 1 cut(s) 494
BstSCI CCNGG 1 cut(s) 305
BstSLI GKGCMC 1 cut(s) 242
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 2 cut(s) 45, 798
BstV2I GAAGAC 1 cut(s) 275
Bsu15I ATCGAT 1 cut(s) 590
BsuRI GGCC 3 cut(s) 76, 305, 380
BsuTUI ATCGAT 1 cut(s) 590
BtgZI GCGATG 1 cut(s) 278
BtsCI GGATG 4 cut(s) 349, 469, 514, 967
BtsIMutI CAGTG 2 cut(s) 876, 1030
BveI ACCTGC 1 cut(s) 143
Cac8I GCNNGC 2 cut(s) 261, 492
CfoI GCGC 1 cut(s) 544
Cfr13I GGNCC 3 cut(s) 75, 97, 274
ClaI ATCGAT 1 cut(s) 590
Csp6I GTAC 2 cut(s) 28, 202
CviAII CATG 3 cut(s) 400, 478, 491
CviQI GTAC 2 cut(s) 28, 202
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 593
DpnII GATC 1 cut(s) 591
DraIII CACNNNGTG 1 cut(s) 246
DrdI GACNNNNNNGTC 1 cut(s) 578
DseDI GACNNNNNNGTC 1 cut(s) 578
Eam1104I CTCTTC 3 cut(s) 365, 558, 951
EarI CTCTTC 3 cut(s) 365, 558, 951
EciI GGCGGA 1 cut(s) 269
Eco130I CCWWGG 2 cut(s) 329, 423
Eco47I GGWCC 2 cut(s) 97, 274
Eco88I CYCGRG 1 cut(s) 63
EcoRI GAATTC 1 cut(s) 210
EcoT14I CCWWGG 2 cut(s) 329, 423
ErhI CCWWGG 2 cut(s) 329, 423
Esp3I CGTCTC 1 cut(s) 191
FaeI CATG 3 cut(s) 403, 481, 494
FatI CATG 3 cut(s) 399, 477, 490
FauI CCCGC 2 cut(s) 42, 285
Fnu4HI GCNGC 5 cut(s) 59, 74, 139, 456, 787
FokI GGATG 4 cut(s) 356, 476, 521, 974
Fsp4HI GCNGC 5 cut(s) 59, 74, 139, 456, 787
FspBI CTAG 1 cut(s) 486
FspI TGCGCA 1 cut(s) 543
GlaI GCGC 1 cut(s) 543
GluI GCNGC 5 cut(s) 59, 74, 139, 456, 787
HaeIII GGCC 3 cut(s) 76, 305, 380
HapII CCGG 3 cut(s) 38, 70, 306
HhaI GCGC 1 cut(s) 544
Hin1II CATG 3 cut(s) 403, 481, 494
Hin6I GCGC 1 cut(s) 542
HinP1I GCGC 1 cut(s) 542
HincII GTYRAC 2 cut(s) 756, 886
HindII GTYRAC 2 cut(s) 756, 886
HindIII AAGCTT 1 cut(s) 719
HinfI GANTC 5 cut(s) 66, 428, 749, 815, 926
HpaI GTTAAC 1 cut(s) 886
HpaII CCGG 3 cut(s) 38, 70, 306
HphI GGTGA 1 cut(s) 698
Hpy166II GTNNAC 4 cut(s) 240, 756, 886, 904
Hpy188I TCNGA 5 cut(s) 114, 125, 289, 775, 811
Hpy188III TCNNGA 1 cut(s) 728
Hpy8I GTNNAC 4 cut(s) 240, 756, 886, 904
Hpy99I CGWCG 2 cut(s) 194, 983
HpyAV CCTTC 1 cut(s) 618
HpyCH4III ACNGT 5 cut(s) 499, 538, 844, 983, 1025
HpyCH4IV ACGT 2 cut(s) 200, 993
HpyCH4V TGCA 4 cut(s) 129, 240, 494, 529
HpyF10VI GCNNNNNNNGC 5 cut(s) 126, 135, 246, 260, 786
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 2 cut(s) 200, 993
Hsp92II CATG 3 cut(s) 403, 481, 494
HspAI GCGC 1 cut(s) 542
KspAI GTTAAC 1 cut(s) 886
Kzo9I GATC 1 cut(s) 591
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 8 cut(s) 51, 83, 98, 148, 319, 545, 778, 882
Lsp1109I GCAGC 2 cut(s) 45, 798
LweI GCATC 4 cut(s) 96, 116, 129, 385
MaeI CTAG 1 cut(s) 486
MaeII ACGT 2 cut(s) 200, 993
MalI GATC 1 cut(s) 593
MboI GATC 1 cut(s) 591
MboII GAAGA 8 cut(s) 194, 280, 382, 395, 575, 668, 824, 968
MhlI GDGCHC 2 cut(s) 242, 251
MluCI AATT 3 cut(s) 164, 210, 319
MlyI GAGTC 2 cut(s) 75, 935
MmeI TCCRAC 3 cut(s) 498, 863, 898
MseI TTAA 5 cut(s) 93, 674, 831, 861, 885
MspI CCGG 3 cut(s) 38, 70, 306
MspR9I CCNGG 1 cut(s) 307
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 5 cut(s) 126, 135, 246, 260, 786
NciI CCSGG 1 cut(s) 307
NdeII GATC 1 cut(s) 591
NlaIII CATG 3 cut(s) 403, 481, 494
NlaIV GGNNCC 2 cut(s) 160, 276
NmeAIII GCCGAG 1 cut(s) 230
NsbI TGCGCA 1 cut(s) 543
NspI RCATGY 1 cut(s) 494
NspV TTCGAA 3 cut(s) 324, 431, 622
PaeI GCATGC 1 cut(s) 494
PaqCI CACCTGC 1 cut(s) 143
PfeI GAWTC 3 cut(s) 428, 749, 815
PkrI GCNGC 5 cut(s) 60, 75, 140, 457, 788
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 2 cut(s) 74, 934
PpsI GAGTC 2 cut(s) 74, 934
PspN4I GGNNCC 2 cut(s) 160, 276
PspPI GGNCC 3 cut(s) 75, 97, 274
PvuI CGATCG 1 cut(s) 594
RsaI GTAC 2 cut(s) 29, 203
RsaNI GTAC 2 cut(s) 28, 202
SaqAI TTAA 5 cut(s) 93, 674, 831, 861, 885
SatI GCNGC 5 cut(s) 59, 74, 139, 456, 787
Sau3AI GATC 1 cut(s) 591
Sau96I GGNCC 3 cut(s) 75, 97, 274
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 2 cut(s) 75, 935
ScrFI CCNGG 1 cut(s) 307
SduI GDGCHC 2 cut(s) 242, 251
SfaNI GCATC 4 cut(s) 96, 116, 129, 385
SfuI TTCGAA 3 cut(s) 324, 431, 622
SinI GGWCC 2 cut(s) 97, 274
SmlI CTYRAG 2 cut(s) 726, 781
SmoI CTYRAG 2 cut(s) 726, 781
SphI GCATGC 1 cut(s) 494
Sse9I AATT 3 cut(s) 164, 210, 319
SsiI CCGC 7 cut(s) 35, 73, 138, 175, 254, 278, 456
SspMI CTAG 1 cut(s) 486
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 329, 423
TaaI ACNGT 5 cut(s) 499, 538, 844, 983, 1025
TaiI ACGT 2 cut(s) 203, 996
TaqI TCGA 5 cut(s) 45, 324, 431, 590, 622
TaqII GACCGA 1 cut(s) 992
TasI AATT 3 cut(s) 164, 210, 319
TatI WGTACW 1 cut(s) 27
TauI GCSGC 3 cut(s) 76, 141, 458
TfiI GAWTC 3 cut(s) 428, 749, 815
Tru1I TTAA 5 cut(s) 93, 674, 831, 861, 885
Tru9I TTAA 5 cut(s) 93, 674, 831, 861, 885
TscAI CASTG 2 cut(s) 876, 1030
TseI GCWGC 2 cut(s) 58, 786
TspDTI ATGAA 5 cut(s) 281, 416, 485, 494, 669
TspGWI ACGGA 2 cut(s) 89, 287
TspRI CASTG 2 cut(s) 876, 1030
VneI GTGCAC 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 97, 274
XapI RAATTY 3 cut(s) 164, 210, 319
XceI RCATGY 1 cut(s) 494
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XspI CTAG 1 cut(s) 486
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.