Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Reverse (-)

22422605 .. 22423102

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g19470.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGAGAACGTAAGGTTCTTAACAAGTACTATCCGCCGGACTTCGACCCCTCGAAGATGCCCGGGATCAGGAGGCCAAAGAATCAGCAGATAAAGGTGTGGATGATGCTTCCGATGAGCATTCGCTGCAACACCTGCGGCAATTACATCTACAAAGGCACCAAATTTAATTCTCGCAAAGAAGATGTCGTTGGAGAGACGTATTTGGGAATTCAAATATTCAGACTTTACTTCAAATGTACCAAGTGCTCTGCCGAGCTCGCGATGAAGACAGACCCCCAGAATTCTGGCTATGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

101

Amino Acids

11.66

Weight (kDa)

9.57

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	1 cut(s)	263
AciI	CCGC	2 cut(s)	35, 138
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	3 cut(s)	164, 210, 283
AfaI	GTAC	2 cut(s)	29, 241
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	215, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	1 cut(s)	259
AluI	AGCT	1 cut(s)	259
Alw21I	GWGCWC	2 cut(s)	251, 261
Alw26I	GTCTC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	126
ApoI	RAATTY	3 cut(s)	164, 210, 283
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AsuC2I	CCSGG	2 cut(s)	63, 64
AvaI	CYCGRG	1 cut(s)	62
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	251, 261
BbvI	GCAGC	1 cut(s)	113
BcnI	CCSGG	2 cut(s)	63, 64
BcoDI	GTCTC	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	2 cut(s)	127, 139
BlsI	GCNGC	2 cut(s)	128, 140
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	2 cut(s)	63, 64
BmeT110I	CYCGRG	1 cut(s)	62
BmiI	GGNNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	63, 64
BmsI	GCATC	2 cut(s)	48, 96
BpiI	GAAGAC	1 cut(s)	275
BpuMI	CCSGG	2 cut(s)	63, 64
BsaJI	CCNNGG	1 cut(s)	62
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
BseDI	CCNNGG	1 cut(s)	62
BseGI	GGATG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	113
Bsh1236I	CGCG	1 cut(s)	263
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	251, 261
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	38, 63
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	1 cut(s)	76
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	251, 261
Bsp143I	GATC	1 cut(s)	66
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	2 cut(s)	35, 138
BspANI	GGCC	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	1 cut(s)	160
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	62
BssMI	GATC	1 cut(s)	66
BstAPI	GCANNNNNTGC	2 cut(s)	126, 135
BstC8I	GCNNGC	1 cut(s)	261
BstF5I	GGATG	1 cut(s)	108
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	69
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	66
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 135, 260
BstSCI	CCNGG	2 cut(s)	61, 62
BstUI	CGCG	1 cut(s)	263
BstV1I	GCAGC	1 cut(s)	113
BstV2I	GAAGAC	1 cut(s)	275
BstXI	CCANNNNNNTGG	1 cut(s)	287
BsuRI	GGCC	1 cut(s)	76
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	1 cut(s)	108
BtuMI	TCGCGA	1 cut(s)	263
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	261
Cfr9I	CCCGGG	1 cut(s)	62
Csp6I	GTAC	2 cut(s)	28, 240
CviJI	RGCY	3 cut(s)	76, 259, 291
CviKI_1	RGCY	3 cut(s)	76, 259, 291
CviQI	GTAC	2 cut(s)	28, 240
DpnI	GATC	1 cut(s)	68
DpnII	GATC	1 cut(s)	66
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	259
EcoRI	GAATTC	2 cut(s)	210, 283
EcoT38I	GRGCYC	1 cut(s)	261
Esp3I	CGTCTC	1 cut(s)	191
FaiI	YATR	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	127, 139
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	127, 139
GluI	GCNGC	2 cut(s)	127, 139
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	2 cut(s)	38, 63
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	2 cut(s)	38, 63
Hpy188I	TCNGA	2 cut(s)	114, 224
Hpy188III	TCNNGA	2 cut(s)	70, 262
HpyCH4IV	ACGT	2 cut(s)	10, 200
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 135, 260
HpySE526I	ACGT	2 cut(s)	10, 200
Kzo9I	GATC	1 cut(s)	66
LpnPI	CCDG	6 cut(s)	51, 55, 76, 148, 273, 293
Lsp1109I	GCAGC	1 cut(s)	113
LweI	GCATC	2 cut(s)	48, 96
MaeII	ACGT	2 cut(s)	10, 200
MalI	GATC	1 cut(s)	68
MboI	GATC	1 cut(s)	66
MboII	GAAGA	3 cut(s)	67, 194, 280
MhlI	GDGCHC	2 cut(s)	251, 261
MluCI	AATT	5 cut(s)	142, 164, 169, 210, 283
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	61, 66
MseI	TTAA	2 cut(s)	21, 168
MspI	CCGG	2 cut(s)	38, 63
MspR9I	CCNGG	2 cut(s)	63, 64
Mva1269I	GAATGC	1 cut(s)	120
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	126, 135, 260
NciI	CCSGG	2 cut(s)	63, 64
NdeII	GATC	1 cut(s)	66
NlaIV	GGNNCC	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	280
NruI	TCGCGA	1 cut(s)	263
PaqCI	CACCTGC	1 cut(s)	143
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	82
PkrI	GCNGC	2 cut(s)	128, 140
Psp124BI	GAGCTC	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	160
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	2 cut(s)	29, 241
RsaNI	GTAC	2 cut(s)	28, 240
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	21, 168
SatI	GCNGC	2 cut(s)	127, 139
Sau3AI	GATC	1 cut(s)	66
ScaI	AGTACT	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	63, 64
SduI	GDGCHC	2 cut(s)	251, 261
SetI	ASST	6 cut(s)	13, 18, 99, 137, 203, 261
SfaNI	GCATC	2 cut(s)	48, 96
SmaI	CCCGGG	1 cut(s)	64
Sse9I	AATT	5 cut(s)	142, 164, 169, 210, 283
SsiI	CCGC	2 cut(s)	35, 138
SspI	AATATT	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	61, 62
TaiI	ACGT	2 cut(s)	13, 203
TaqI	TCGA	2 cut(s)	45, 53
TasI	AATT	5 cut(s)	142, 164, 169, 210, 283
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	21, 168
Tru9I	TTAA	2 cut(s)	21, 168
TseI	GCWGC	1 cut(s)	126
TspDTI	ATGAA	1 cut(s)	281
TspMI	CCCGGG	1 cut(s)	62
XapI	RAATTY	3 cut(s)	164, 210, 283
XmaI	CCCGGG	1 cut(s)	62
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.