Rh5BG193000

Coiled-coil domain-containing protein 94 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0006725
Physical Location & Seq
Forward (+)
21288987 .. 21289262
276 bp
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UTR
Exon/CDS
Intron
Rh5BG193000.1

Sequence Viewer

Length: 276 bp
ATGGGAGAGCGTAAGGTTCTCAACAAGTACTACCCGCCGGACTTCGACCCGTCCAAGCTGCCCCGAGTCCGGCGGCCCAAGAACCAGCAGATTAAGGTCCGTATGATGCTTCCGATGAGCATCAGATGCAACACCTGTGGCAACTACATCTACAAGGGCACCAAATTCAACTCCCGGAAAGAAGATGTCGTCGGCGAGGTACGTGGATCACCAATCTTGAATCTTAGGGTTTCTAATTGCCCAGCGCAGTTGATTCTAGGGTTTCTTGAATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF572

Protein Analysis

91

Amino Acids

10.5

Weight (kDa)

10.02

Isoelectric Point (pI)

46.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Saf4_Yju2 PF04502 9 - 66 6.5e-33 Saf4/Yju2 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 158
AciI CCGC 2 cut(s) 35, 73
AclWI GGATC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 164
AfaI GTAC 2 cut(s) 29, 201
AfiI CCNNNNNNNGG 1 cut(s) 69
AgsI TTSAA 3 cut(s) 169, 220, 269
AluBI AGCT 1 cut(s) 58
AluI AGCT 1 cut(s) 58
AlwI GGATC 1 cut(s) 214
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 164
AspLEI GCGC 1 cut(s) 247
AspS9I GGNCC 2 cut(s) 75, 97
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 1 cut(s) 201
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 97
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 45
BcnI CCSGG 1 cut(s) 175
BfaI CTAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 59, 74
BlsI GCNGC 2 cut(s) 60, 75
BmcAI AGTACT 1 cut(s) 29
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 75, 97
BmiI GGNNCC 1 cut(s) 160
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 3 cut(s) 96, 116, 129
BpuMI CCSGG 1 cut(s) 175
BsaAI YACGTR 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 119
BseJI GATNNNNATC 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 69
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 76
BshNI GGYRCC 1 cut(s) 158
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 3 cut(s) 38, 70, 175
BslI CCNNNNNNNGG 1 cut(s) 69
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 161
Bsp143I GATC 1 cut(s) 206
BspACI CCGC 2 cut(s) 35, 73
BspANI GGCC 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 160
BspPI GGATC 1 cut(s) 214
BspT107I GGYRCC 1 cut(s) 158
BssMI GATC 1 cut(s) 206
BstAPI GCANNNNNTGC 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 203
BstDEI CTNAG 2 cut(s) 224, 273
BstHHI GCGC 1 cut(s) 247
BstKTI GATC 1 cut(s) 209
BstMBI GATC 1 cut(s) 206
BstMWI GCNNNNNNNGC 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 76
CfoI GCGC 1 cut(s) 247
Cfr13I GGNCC 2 cut(s) 75, 97
Csp6I GTAC 2 cut(s) 28, 200
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviJI RGCY 2 cut(s) 58, 76
CviKI_1 RGCY 2 cut(s) 58, 76
CviQI GTAC 2 cut(s) 28, 200
DdeI CTNAG 2 cut(s) 224, 273
DpnI GATC 1 cut(s) 208
DpnII GATC 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 97
Eco88I CYCGRG 1 cut(s) 63
FaiI YATR 1 cut(s) 104
FauI CCCGC 1 cut(s) 42
Fnu4HI GCNGC 2 cut(s) 59, 74
Fsp4HI GCNGC 2 cut(s) 59, 74
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 246
GluI GCNGC 2 cut(s) 59, 74
GsaI CCCAGC 1 cut(s) 245
HaeIII GGCC 1 cut(s) 76
HapII CCGG 3 cut(s) 38, 70, 175
HhaI GCGC 1 cut(s) 247
Hin6I GCGC 1 cut(s) 245
HinP1I GCGC 1 cut(s) 245
HinfI GANTC 4 cut(s) 66, 220, 253, 269
HpaII CCGG 3 cut(s) 38, 70, 175
HphI GGTGA 1 cut(s) 201
Hpy188I TCNGA 2 cut(s) 114, 125
Hpy188III TCNNGA 2 cut(s) 217, 266
Hpy99I CGWCG 1 cut(s) 194
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 129
HpyF10VI GCNNNNNNNGC 1 cut(s) 126
HpyF3I CTNAG 2 cut(s) 224, 273
HpySE526I ACGT 1 cut(s) 202
HspAI GCGC 1 cut(s) 245
Kzo9I GATC 1 cut(s) 206
LpnPI CCDG 6 cut(s) 51, 83, 98, 148, 188, 255
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 3 cut(s) 96, 116, 129
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 202
MalI GATC 1 cut(s) 208
MboI GATC 1 cut(s) 206
MboII GAAGA 1 cut(s) 194
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 164, 235
MlyI GAGTC 1 cut(s) 75
MnlI CCTC 1 cut(s) 190
MseI TTAA 1 cut(s) 93
MspI CCGG 3 cut(s) 38, 70, 175
MspR9I CCNGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 126
NciI CCSGG 1 cut(s) 175
NdeII GATC 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 160
PfeI GAWTC 3 cut(s) 220, 253, 269
PfoI TCCNGGA 1 cut(s) 173
PkrI GCNGC 2 cut(s) 60, 75
PleI GAGTC 1 cut(s) 74
PpsI GAGTC 1 cut(s) 74
Ppu21I YACGTR 1 cut(s) 203
PspFI CCCAGC 1 cut(s) 241
PspN4I GGNNCC 1 cut(s) 160
PspPI GGNCC 2 cut(s) 75, 97
RsaI GTAC 2 cut(s) 29, 201
RsaNI GTAC 2 cut(s) 28, 200
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 59, 74
Sau3AI GATC 1 cut(s) 206
Sau96I GGNCC 2 cut(s) 75, 97
ScaI AGTACT 1 cut(s) 29
SchI GAGTC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 161
SetI ASST 6 cut(s) 18, 60, 99, 137, 201, 205
SfaNI GCATC 3 cut(s) 96, 116, 129
SinI GGWCC 1 cut(s) 97
Sse9I AATT 2 cut(s) 164, 235
SsiI CCGC 2 cut(s) 35, 73
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 1 cut(s) 173
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 164, 235
TatI WGTACW 1 cut(s) 27
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 3 cut(s) 220, 253, 269
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseI GCWGC 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 89
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 164
XspI CTAG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.