Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001647.1

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Forward (+)

115589 .. 118950

Gene Structure 3362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001647.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atgggagagcgtaaggttctcaacaagtactacccgccggacttcgacccgtccaagctgccccgagtccggcggcccaagaaccagcagattaaggtccgtatgatgcttccgatgagcatcagatgcaacacctgtggcaactacatctacagggcaccaaattcaactcccggaaagaagatgtcgtcggcgagattttacttcaagtgcaccaagtgctcggcggagcttgcgatgaagacggacccgcagaactcagactatgtggtggaggccggggctacacgaaatttcgaaccttggcgtaatgaggatgaggaagtggataaggagaagcagaagagggaggccgaagaaatgggagatgccatgaaatctttggagaacagaaccttggattcgaaaagagagatggatatccttgccgctttggatgagatgaagtccatgaagtccaggcatgcaactgtgagtgtggatgagatgttggaggctttacaacatacggttgcgcacaaggagaaaaggctggaagaggaggatgaagcagtcataaaatcgatcgtattccatgttagtacttacattctctctcttttcaactcaaaagattatgttcgaaggattgatgatgatgatttagatgatgatgaagatttattagagccgttaagtggcaatggtgaaacgtctaatcatctgtcaaagttatctaatgaatatgtatacatatttgccatgcagaaacaaaagctttctcaagataatagcaaaccaacaggttcgttgacaaaaaccagtatatctgatagctcaagcagcagaggaaaacagaatggttcagaagattctaaaatcattttcacgtctccaactgttaggctttcagtagttaagaaaccagtggtggctaaagttaacaatttggcaaaagtggacgagaaagaagttggagaggagtctaaaagtttgactaaagatgagaaagaagaggacggcaagaataagaccgacggtggaagcaacgtattacaatcgctgttccaaaactacaacagtgatgatagtgatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

359

Amino Acids

40.79

Weight (kDa)

5.47

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	516
AccB1I	GGYRCC	1 cut(s)	157
AccI	GTMKAC	1 cut(s)	729
AciI	CCGC	5 cut(s)	35, 73, 227, 251, 429
AcsI	RAATTY	2 cut(s)	163, 292
AdeI	CACNNNGTG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	29, 583
AfiI	CCNNNNNNNGG	2 cut(s)	69, 677
AgsI	TTSAA	3 cut(s)	168, 208, 604
AjiI	CACGTC	1 cut(s)	870
AjnI	CCWGG	1 cut(s)	458
AjuI	GAANNNNNNNTTGG	2 cut(s)	380, 412
AluBI	AGCT	4 cut(s)	58, 232, 757, 816
AluI	AGCT	4 cut(s)	58, 232, 757, 816
Alw21I	GWGCWC	2 cut(s)	215, 224
Alw26I	GTCTC	1 cut(s)	876
Alw44I	GTGCAC	1 cut(s)	211
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	74, 276, 351
ApaLI	GTGCAC	1 cut(s)	211
ApeKI	GCWGC	2 cut(s)	58, 822
ApoI	RAATTY	2 cut(s)	163, 292
AspLEI	GCGC	1 cut(s)	517
AspS9I	GGNCC	3 cut(s)	75, 97, 247
AsuC2I	CCSGG	2 cut(s)	174, 280
AsuHPI	GGTGA	1 cut(s)	698
AsuII	TTCGAA	3 cut(s)	297, 404, 622
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	97, 247
BaeGI	GKGCMC	2 cut(s)	160, 215
BanI	GGYRCC	1 cut(s)	157
BbsI	GAAGAC	1 cut(s)	248
Bbv12I	GWGCWC	2 cut(s)	215, 224
BbvI	GCAGC	2 cut(s)	45, 834
BccI	CCATC	1 cut(s)	409
BceAI	ACGGC	2 cut(s)	655, 1015
BciT130I	CCWGG	1 cut(s)	460
BcnI	CCSGG	2 cut(s)	174, 280
BcoDI	GTCTC	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	151
BisI	GCNGC	4 cut(s)	59, 74, 429, 823
BlsI	GCNGC	4 cut(s)	60, 75, 430, 824
BmcAI	AGTACT	2 cut(s)	29, 583
Bme1390I	CCNGG	3 cut(s)	174, 280, 460
Bme18I	GGWCC	2 cut(s)	97, 247
BmeT110I	CYCGRG	1 cut(s)	63
BmgBI	CACGTC	1 cut(s)	870
BmgT120I	GGNCC	3 cut(s)	75, 97, 247
BmiI	GGNNCC	2 cut(s)	159, 249
BmrFI	CCNGG	3 cut(s)	174, 280, 460
BmsI	GCATC	4 cut(s)	96, 116, 129, 358
BpiI	GAAGAC	1 cut(s)	248
Bpu14I	TTCGAA	3 cut(s)	297, 404, 622
BpuEI	CTTGAG	2 cut(s)	747, 802
BpuMI	CCSGG	2 cut(s)	174, 280
Bsa29I	ATCGAT	1 cut(s)	563
BsaBI	GATNNNNATC	2 cut(s)	119, 419
BsaJI	CCNNGG	3 cut(s)	279, 302, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 677
Bse1I	ACTGG	2 cut(s)	801, 905
Bse3DI	GCAATG	1 cut(s)	688
Bse8I	GATNNNNATC	2 cut(s)	119, 419
BseBI	CCWGG	1 cut(s)	460
BseCI	ATCGAT	1 cut(s)	563
BseDI	CCNNGG	3 cut(s)	279, 302, 396
BseGI	GGATG	4 cut(s)	322, 442, 487, 550
BseJI	GATNNNNATC	2 cut(s)	119, 419
BseLI	CCNNNNNNNGG	2 cut(s)	69, 677
BseMI	GCAATG	1 cut(s)	688
BseMII	CTCAG	1 cut(s)	273
BseNI	ACTGG	2 cut(s)	801, 905
BseRI	GAGGAG	2 cut(s)	554, 974
BseSI	GKGCMC	2 cut(s)	160, 215
BseXI	GCAGC	2 cut(s)	45, 834
Bsh1285I	CGRYCG	1 cut(s)	567
BshFI	GGCC	3 cut(s)	76, 278, 353
BshNI	GGYRCC	1 cut(s)	157
BshVI	ATCGAT	1 cut(s)	563
BsiEI	CGRYCG	1 cut(s)	567
BsiHKAI	GWGCWC	2 cut(s)	215, 224
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	4 cut(s)	38, 70, 174, 279
BslI	CCNNNNNNNGG	2 cut(s)	69, 677
BsmAI	GTCTC	1 cut(s)	876
BsmBI	CGTCTC	1 cut(s)	876
BsnI	GGCC	3 cut(s)	76, 278, 353
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	3 cut(s)	297, 404, 622
Bsp1286I	GDGCHC	3 cut(s)	160, 215, 224
Bsp143I	GATC	1 cut(s)	564
BspACI	CCGC	5 cut(s)	35, 73, 227, 251, 429
BspANI	GGCC	3 cut(s)	76, 278, 353
BspCNI	CTCAG	1 cut(s)	272
BspDI	ATCGAT	1 cut(s)	563
BspLI	GGNNCC	2 cut(s)	159, 249
BspT104I	TTCGAA	3 cut(s)	297, 404, 622
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	1 cut(s)	688
BsrI	ACTGG	2 cut(s)	801, 905
BssECI	CCNNGG	3 cut(s)	279, 302, 396
BssMI	GATC	1 cut(s)	564
BssNAI	GTATAC	1 cut(s)	730
BssT1I	CCWWGG	2 cut(s)	302, 396
Bst1107I	GTATAC	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	460
Bst4CI	ACNGT	5 cut(s)	472, 511, 880, 1019, 1061
Bst6I	CTCTTC	3 cut(s)	338, 531, 987
BstAPI	GCANNNNNTGC	2 cut(s)	126, 219
BstBI	TTCGAA	3 cut(s)	297, 404, 622
BstC8I	GCNNGC	2 cut(s)	234, 465
BstDEI	CTNAG	1 cut(s)	259
BstF5I	GGATG	4 cut(s)	322, 442, 487, 550
BstHHI	GCGC	1 cut(s)	517
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	1 cut(s)	564
BstMCI	CGRYCG	1 cut(s)	567
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 219, 233, 822
BstNI	CCWGG	1 cut(s)	460
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	3 cut(s)	172, 278, 458
BstSFI	CTRYAG	1 cut(s)	151
BstSLI	GKGCMC	2 cut(s)	160, 215
BstV1I	GCAGC	2 cut(s)	45, 834
BstV2I	GAAGAC	1 cut(s)	248
BstZ17I	GTATAC	1 cut(s)	730
Bsu15I	ATCGAT	1 cut(s)	563
BsuRI	GGCC	3 cut(s)	76, 278, 353
BsuTUI	ATCGAT	1 cut(s)	563
BtgZI	GCGATG	1 cut(s)	251
BtrI	CACGTC	1 cut(s)	870
BtsCI	GGATG	4 cut(s)	322, 442, 487, 550
BtsIMutI	CAGTG	2 cut(s)	912, 1066
Cac8I	GCNNGC	2 cut(s)	234, 465
CfoI	GCGC	1 cut(s)	517
Cfr13I	GGNCC	3 cut(s)	75, 97, 247
ClaI	ATCGAT	1 cut(s)	563
Csp6I	GTAC	2 cut(s)	28, 582
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	5 cut(s)	373, 451, 464, 575, 742
CviQI	GTAC	2 cut(s)	28, 582
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
DraIII	CACNNNGTG	1 cut(s)	219
Eam1104I	CTCTTC	3 cut(s)	338, 531, 987
EarI	CTCTTC	3 cut(s)	338, 531, 987
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	2 cut(s)	302, 396
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	2 cut(s)	97, 247
Eco88I	CYCGRG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	2 cut(s)	302, 396
ErhI	CCWWGG	2 cut(s)	302, 396
Esp3I	CGTCTC	1 cut(s)	876
FaeI	CATG	5 cut(s)	376, 454, 467, 578, 745
FatI	CATG	5 cut(s)	372, 450, 463, 574, 741
FauI	CCCGC	2 cut(s)	42, 258
FblI	GTMKAC	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	59, 74, 429, 823
FokI	GGATG	4 cut(s)	329, 449, 494, 557
Fsp4HI	GCNGC	4 cut(s)	59, 74, 429, 823
FspI	TGCGCA	1 cut(s)	516
GlaI	GCGC	1 cut(s)	516
GluI	GCNGC	4 cut(s)	59, 74, 429, 823
HaeIII	GGCC	3 cut(s)	76, 278, 353
HapII	CCGG	4 cut(s)	38, 70, 174, 279
HhaI	GCGC	1 cut(s)	517
Hin1II	CATG	5 cut(s)	376, 454, 467, 578, 745
Hin6I	GCGC	1 cut(s)	515
HinP1I	GCGC	1 cut(s)	515
HincII	GTYRAC	2 cut(s)	792, 922
HindII	GTYRAC	2 cut(s)	792, 922
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	4 cut(s)	66, 401, 851, 962
HpaI	GTTAAC	1 cut(s)	922
HpaII	CCGG	4 cut(s)	38, 70, 174, 279
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	5 cut(s)	213, 730, 792, 922, 940
Hpy188I	TCNGA	5 cut(s)	114, 125, 262, 811, 847
Hpy188III	TCNNGA	1 cut(s)	764
Hpy8I	GTNNAC	5 cut(s)	213, 730, 792, 922, 940
Hpy99I	CGWCG	2 cut(s)	193, 1019
HpyAV	CCTTC	1 cut(s)	618
HpyCH4III	ACNGT	5 cut(s)	472, 511, 880, 1019, 1061
HpyCH4IV	ACGT	3 cut(s)	692, 869, 1029
HpyCH4V	TGCA	4 cut(s)	129, 213, 467, 745
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 219, 233, 822
HpyF3I	CTNAG	1 cut(s)	259
HpySE526I	ACGT	3 cut(s)	692, 869, 1029
Hsp92II	CATG	5 cut(s)	376, 454, 467, 578, 745
HspAI	GCGC	1 cut(s)	515
KspAI	GTTAAC	1 cut(s)	922
Kzo9I	GATC	1 cut(s)	564
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	2 cut(s)	45, 834
LweI	GCATC	4 cut(s)	96, 116, 129, 358
MaeII	ACGT	3 cut(s)	692, 869, 1029
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	8 cut(s)	193, 253, 355, 368, 548, 668, 860, 1004
MhlI	GDGCHC	3 cut(s)	160, 215, 224
MluCI	AATT	3 cut(s)	163, 292, 925
MlyI	GAGTC	2 cut(s)	75, 971
MmeI	TCCRAC	3 cut(s)	471, 899, 934
MseI	TTAA	4 cut(s)	93, 674, 897, 921
MspI	CCGG	4 cut(s)	38, 70, 174, 279
MspR9I	CCNGG	3 cut(s)	174, 280, 460
MvaI	CCWGG	1 cut(s)	460
MwoI	GCNNNNNNNGC	4 cut(s)	126, 219, 233, 822
NciI	CCSGG	2 cut(s)	174, 280
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	5 cut(s)	376, 454, 467, 578, 745
NlaIV	GGNNCC	2 cut(s)	159, 249
NmeAIII	GCCGAG	1 cut(s)	203
NsbI	TGCGCA	1 cut(s)	516
NspI	RCATGY	1 cut(s)	467
NspV	TTCGAA	3 cut(s)	297, 404, 622
PaeI	GCATGC	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	401, 851
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	60, 75, 430, 824
Ple19I	CGATCG	1 cut(s)	567
PleI	GAGTC	2 cut(s)	74, 970
PpsI	GAGTC	2 cut(s)	74, 970
Psp6I	CCWGG	1 cut(s)	458
PspGI	CCWGG	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	159, 249
PspPI	GGNCC	3 cut(s)	75, 97, 247
PvuI	CGATCG	1 cut(s)	567
RsaI	GTAC	2 cut(s)	29, 583
RsaNI	GTAC	2 cut(s)	28, 582
SaqAI	TTAA	4 cut(s)	93, 674, 897, 921
SatI	GCNGC	4 cut(s)	59, 74, 429, 823
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	3 cut(s)	75, 97, 247
ScaI	AGTACT	2 cut(s)	29, 583
SchI	GAGTC	2 cut(s)	75, 971
ScrFI	CCNGG	3 cut(s)	174, 280, 460
SduI	GDGCHC	3 cut(s)	160, 215, 224
SfaNI	GCATC	4 cut(s)	96, 116, 129, 358
SfcI	CTRYAG	1 cut(s)	151
SfuI	TTCGAA	3 cut(s)	297, 404, 622
SinI	GGWCC	2 cut(s)	97, 247
SmlI	CTYRAG	2 cut(s)	762, 817
SmoI	CTYRAG	2 cut(s)	762, 817
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	3 cut(s)	163, 292, 925
SsiI	CCGC	5 cut(s)	35, 73, 227, 251, 429
StyD4I	CCNGG	3 cut(s)	172, 278, 458
StyI	CCWWGG	2 cut(s)	302, 396
TaaI	ACNGT	5 cut(s)	472, 511, 880, 1019, 1061
TaiI	ACGT	3 cut(s)	695, 872, 1032
TaqI	TCGA	5 cut(s)	45, 297, 404, 563, 622
TaqII	GACCGA	1 cut(s)	1028
TasI	AATT	3 cut(s)	163, 292, 925
TatI	WGTACW	2 cut(s)	27, 581
TauI	GCSGC	2 cut(s)	76, 431
TfiI	GAWTC	2 cut(s)	401, 851
Tru1I	TTAA	4 cut(s)	93, 674, 897, 921
Tru9I	TTAA	4 cut(s)	93, 674, 897, 921
TscAI	CASTG	2 cut(s)	912, 1066
TseI	GCWGC	2 cut(s)	58, 822
TspDTI	ATGAA	7 cut(s)	254, 389, 458, 467, 561, 669, 735
TspGWI	ACGGA	2 cut(s)	89, 260
TspRI	CASTG	2 cut(s)	912, 1066
VneI	GTGCAC	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	97, 247
XapI	RAATTY	2 cut(s)	163, 292
XceI	RCATGY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	1 cut(s)	729
ZrmI	AGTACT	2 cut(s)	29, 583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.