Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032492.1

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Reverse (-)

71 .. 830

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032492.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgggagagcgtaaggttctcaacaagtactccccgccggacttcgacccgtccaagctgccccgagtccggcggcccaagaaccagcagattaaggtccgtatgatgcttccgatgagcatcagatgcaacacctgcggcaactacatctacaagggcaccaaattcaactcgcggaaagaagatgtcgtcggcgagacgtacttgggaattcaaatctttagattttacttcaagtgcaccaagtgctcggcggagcttgcgatgaagacggacccgcagaactcagactatgtggtggaggccggggctacacgaaatttcgaaccttggcgtaatgaggatgaggaagtggataaggagaagcagaagagggaggccgaagaaatgggagatgccatgaaatctttggagaacagaaccttggattcgaaaagagaaatggatatccttgccgcattggatgagatgaagtccatgaaggtagatgcctcactagttgctaaatatgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

171

Amino Acids

19.93

Weight (kDa)

8.57

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	1 cut(s)	175
AciI	CCGC	7 cut(s)	35, 73, 138, 175, 254, 278, 456
AcsI	RAATTY	3 cut(s)	164, 210, 319
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	29, 203
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	3 cut(s)	169, 215, 235
AhlI	ACTAGT	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
AluBI	AGCT	2 cut(s)	58, 259
AluI	AGCT	2 cut(s)	58, 259
Alw21I	GWGCWC	2 cut(s)	242, 251
Alw26I	GTCTC	1 cut(s)	191
Alw44I	GTGCAC	1 cut(s)	238
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	3 cut(s)	74, 303, 378
ApaLI	GTGCAC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	3 cut(s)	164, 210, 319
AspS9I	GGNCC	3 cut(s)	75, 97, 274
AsuC2I	CCSGG	1 cut(s)	307
AsuII	TTCGAA	2 cut(s)	324, 431
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	2 cut(s)	97, 274
BaeGI	GKGCMC	2 cut(s)	161, 242
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	242, 251
BbvI	GCAGC	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	191
BcuI	ACTAGT	1 cut(s)	496
BfaI	CTAG	1 cut(s)	497
BfuAI	ACCTGC	1 cut(s)	143
BisI	GCNGC	4 cut(s)	59, 74, 139, 456
BlsI	GCNGC	4 cut(s)	60, 75, 140, 457
BmcAI	AGTACT	1 cut(s)	29
Bme1390I	CCNGG	1 cut(s)	307
Bme18I	GGWCC	2 cut(s)	97, 274
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	3 cut(s)	75, 97, 274
BmiI	GGNNCC	2 cut(s)	160, 276
BmrFI	CCNGG	1 cut(s)	307
BmsI	GCATC	5 cut(s)	96, 116, 129, 385, 478
BpiI	GAAGAC	1 cut(s)	275
Bpu14I	TTCGAA	2 cut(s)	324, 431
BpuMI	CCSGG	1 cut(s)	307
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	3 cut(s)	306, 329, 423
BsaXI	ACNNNNNCTCC	2 cut(s)	14, 44
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	3 cut(s)	306, 329, 423
BseGI	GGATG	2 cut(s)	349, 469
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	300
BseSI	GKGCMC	2 cut(s)	161, 242
BseXI	GCAGC	1 cut(s)	45
Bsh1236I	CGCG	1 cut(s)	175
BshFI	GGCC	3 cut(s)	76, 305, 380
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	242, 251
BsiHKCI	CYCGRG	1 cut(s)	63
BsiSI	CCGG	3 cut(s)	38, 70, 306
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	191
BsmBI	CGTCTC	1 cut(s)	191
BsnI	GGCC	3 cut(s)	76, 305, 380
BsoBI	CYCGRG	1 cut(s)	63
Bsp119I	TTCGAA	2 cut(s)	324, 431
Bsp1286I	GDGCHC	3 cut(s)	161, 242, 251
BspACI	CCGC	7 cut(s)	35, 73, 138, 175, 254, 278, 456
BspANI	GGCC	3 cut(s)	76, 305, 380
BspCNI	CTCAG	1 cut(s)	299
BspFNI	CGCG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	160, 276
BspMI	ACCTGC	1 cut(s)	143
BspT104I	TTCGAA	2 cut(s)	324, 431
BspT107I	GGYRCC	1 cut(s)	158
BssECI	CCNNGG	3 cut(s)	306, 329, 423
BssT1I	CCWWGG	2 cut(s)	329, 423
Bst6I	CTCTTC	1 cut(s)	365
BstAPI	GCANNNNNTGC	3 cut(s)	126, 135, 246
BstBI	TTCGAA	2 cut(s)	324, 431
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	349, 469
BstFNI	CGCG	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	191
BstMWI	GCNNNNNNNGC	4 cut(s)	126, 135, 246, 260
BstSCI	CCNGG	1 cut(s)	305
BstSLI	GKGCMC	2 cut(s)	161, 242
BstUI	CGCG	1 cut(s)	175
BstV1I	GCAGC	1 cut(s)	45
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	3 cut(s)	76, 305, 380
BtgZI	GCGATG	1 cut(s)	278
BtsCI	GGATG	2 cut(s)	349, 469
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	75, 97, 274
Csp6I	GTAC	2 cut(s)	28, 202
CviAII	CATG	2 cut(s)	400, 478
CviJI	RGCY	6 cut(s)	58, 76, 259, 305, 311, 380
CviKI_1	RGCY	6 cut(s)	58, 76, 259, 305, 311, 380
CviQI	GTAC	2 cut(s)	28, 202
DdeI	CTNAG	1 cut(s)	286
DraIII	CACNNNGTG	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	365
EarI	CTCTTC	1 cut(s)	365
EciI	GGCGGA	1 cut(s)	269
Eco130I	CCWWGG	2 cut(s)	329, 423
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	97, 274
Eco88I	CYCGRG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	210
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	2 cut(s)	329, 423
ErhI	CCWWGG	2 cut(s)	329, 423
Esp3I	CGTCTC	1 cut(s)	191
FaeI	CATG	2 cut(s)	403, 481
FaiI	YATR	5 cut(s)	104, 294, 401, 479, 510
FatI	CATG	2 cut(s)	399, 477
FauI	CCCGC	2 cut(s)	42, 285
Fnu4HI	GCNGC	4 cut(s)	59, 74, 139, 456
FokI	GGATG	2 cut(s)	356, 476
Fsp4HI	GCNGC	4 cut(s)	59, 74, 139, 456
FspBI	CTAG	1 cut(s)	497
GluI	GCNGC	4 cut(s)	59, 74, 139, 456
HaeIII	GGCC	3 cut(s)	76, 305, 380
HapII	CCGG	3 cut(s)	38, 70, 306
Hin1II	CATG	2 cut(s)	403, 481
HinfI	GANTC	2 cut(s)	66, 428
HpaII	CCGG	3 cut(s)	38, 70, 306
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	3 cut(s)	114, 125, 289
Hpy8I	GTNNAC	1 cut(s)	240
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	1 cut(s)	475
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	2 cut(s)	129, 240
HpyF10VI	GCNNNNNNNGC	4 cut(s)	126, 135, 246, 260
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	2 cut(s)	403, 481
LmnI	GCTCC	1 cut(s)	256
LpnPI	CCDG	5 cut(s)	51, 83, 98, 148, 319
Lsp1109I	GCAGC	1 cut(s)	45
LweI	GCATC	5 cut(s)	96, 116, 129, 385, 478
MaeI	CTAG	1 cut(s)	497
MaeII	ACGT	1 cut(s)	200
MboII	GAAGA	4 cut(s)	194, 280, 382, 395
MhlI	GDGCHC	3 cut(s)	161, 242, 251
MluCI	AATT	3 cut(s)	164, 210, 319
MlyI	GAGTC	1 cut(s)	75
MnlI	CCTC	6 cut(s)	295, 334, 340, 366, 370, 502
MseI	TTAA	1 cut(s)	93
MspI	CCGG	3 cut(s)	38, 70, 306
MspR9I	CCNGG	1 cut(s)	307
MvnI	CGCG	1 cut(s)	175
MwoI	GCNNNNNNNGC	4 cut(s)	126, 135, 246, 260
NciI	CCSGG	1 cut(s)	307
NlaIII	CATG	2 cut(s)	403, 481
NlaIV	GGNNCC	2 cut(s)	160, 276
NmeAIII	GCCGAG	1 cut(s)	230
NspV	TTCGAA	2 cut(s)	324, 431
PaqCI	CACCTGC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	428
PkrI	GCNGC	4 cut(s)	60, 75, 140, 457
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	160, 276
PspPI	GGNCC	3 cut(s)	75, 97, 274
RsaI	GTAC	2 cut(s)	29, 203
RsaNI	GTAC	2 cut(s)	28, 202
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	4 cut(s)	59, 74, 139, 456
Sau96I	GGNCC	3 cut(s)	75, 97, 274
ScaI	AGTACT	1 cut(s)	29
SchI	GAGTC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	307
SduI	GDGCHC	3 cut(s)	161, 242, 251
SetI	ASST	9 cut(s)	18, 60, 99, 137, 203, 261, 331, 425, 486
SfaNI	GCATC	5 cut(s)	96, 116, 129, 385, 478
SfuI	TTCGAA	2 cut(s)	324, 431
SinI	GGWCC	2 cut(s)	97, 274
SpeI	ACTAGT	1 cut(s)	496
Sse9I	AATT	3 cut(s)	164, 210, 319
SsiI	CCGC	7 cut(s)	35, 73, 138, 175, 254, 278, 456
SspMI	CTAG	1 cut(s)	497
StyD4I	CCNGG	1 cut(s)	305
StyI	CCWWGG	2 cut(s)	329, 423
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	3 cut(s)	45, 324, 431
TasI	AATT	3 cut(s)	164, 210, 319
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	3 cut(s)	76, 141, 458
TfiI	GAWTC	1 cut(s)	428
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	4 cut(s)	281, 416, 485, 494
TspGWI	ACGGA	2 cut(s)	89, 287
VneI	GTGCAC	1 cut(s)	238
VpaK11BI	GGWCC	2 cut(s)	97, 274
XapI	RAATTY	3 cut(s)	164, 210, 319
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XspI	CTAG	1 cut(s)	497
ZrmI	AGTACT	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.