Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Forward (+)

12619554 .. 12620027

Gene Structure 474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCAGCACGCAACGCCGACTTAAGCCTTCCGATGAGACTTCAATGCAACAATTGTGATAATATCATGAGTAAGGGCACTAAATTCACTAGCCGTGTAGAAGACGTCATTGGCGAGACGTACCTTGGGATTAAAATCTTTAGGTTTCAGATCCAGTGCACCAACGGCTCTCATGAGATGAAGTTTAGGACCGATCCAAAGAACGCTGATTTTATAATCGAATCAGGTGCAACTCGCCTTCTATTGCCGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000349 GO:0000375 GO:0000377 GO:0000393 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009966 GO:0009968 GO:0009987 GO:0010467 GO:0010646 GO:0010648 GO:0010941 GO:0016043 GO:0016070 GO:0016071 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0023057 GO:0030431 GO:0032501 GO:0032991 GO:0034622 GO:0034641 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043516 GO:0043518 GO:0043523 GO:0043524 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0060548 GO:0065003 GO:0065007 GO:0071006 GO:0071012 GO:0071704 GO:0071826 GO:0071840 GO:0080134 GO:0080135 GO:0090304 GO:1901214 GO:1901215 GO:1901360 GO:1901796 GO:1901797 GO:1902494 GO:1902531 GO:1902532 GO:1990904 GO:2001020 GO:2001021

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

84

Amino Acids

9.5

Weight (kDa)

7.72

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Saf4_Yju2	PF04502	9 - 79	2.1e-29	Saf4/Yju2 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
AatII	GACGTC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	145, 188
AcsI	RAATTY	1 cut(s)	83
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	122
AflII	CTTAAG	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	44
AjuI	GAANNNNNNNTTGG	2 cut(s)	93, 125
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	2 cut(s)	31, 110
Alw44I	GTGCAC	1 cut(s)	157
AlwI	GGATC	2 cut(s)	145, 188
ApaLI	GTGCAC	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	189
BaeGI	GKGCMC	2 cut(s)	80, 161
BbsI	GAAGAC	1 cut(s)	108
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	2 cut(s)	78, 181
BcgI	CGANNNNNNTGC	2 cut(s)	209, 243
BcoDI	GTCTC	2 cut(s)	31, 110
BfaI	CTAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	22
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	108
BsaBI	GATNNNNATC	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	134
BseDI	CCNNGG	1 cut(s)	124
BseJI	GATNNNNATC	1 cut(s)	134
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	2 cut(s)	80, 161
BseXI	GCAGC	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	161
BsiSI	CCGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	31, 110
BsmBI	CGTCTC	1 cut(s)	110
Bsp1286I	GDGCHC	2 cut(s)	80, 161
Bsp143I	GATC	2 cut(s)	150, 193
BspHI	TCATGA	2 cut(s)	66, 172
BspPI	GGATC	2 cut(s)	145, 188
BspTI	CTTAAG	1 cut(s)	22
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	2 cut(s)	150, 193
BssNI	GRCGYC	1 cut(s)	105
BssT1I	CCWWGG	1 cut(s)	124
BstACI	GRCGYC	1 cut(s)	105
BstAFI	CTTAAG	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	10
BstKTI	GATC	2 cut(s)	153, 196
BstMAI	GTCTC	2 cut(s)	31, 110
BstMBI	GATC	2 cut(s)	150, 193
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 165
BstSLI	GKGCMC	2 cut(s)	80, 161
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	108
BstX2I	RGATCY	1 cut(s)	150
BstYI	RGATCY	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	161
Cac8I	GCNNGC	1 cut(s)	10
CciI	TCATGA	2 cut(s)	66, 172
Cfr13I	GGNCC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	67, 173
CviJI	RGCY	3 cut(s)	27, 93, 168
CviKI_1	RGCY	3 cut(s)	27, 93, 168
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	152, 195
DpnII	GATC	2 cut(s)	150, 193
Eco130I	CCWWGG	1 cut(s)	124
Eco47I	GGWCC	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	124
Esp3I	CGTCTC	1 cut(s)	110
FaeI	CATG	2 cut(s)	70, 176
FaiI	YATR	3 cut(s)	68, 174, 215
FatI	CATG	2 cut(s)	66, 172
Fnu4HI	GCNGC	1 cut(s)	6
Fsp4HI	GCNGC	1 cut(s)	6
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	6
HapII	CCGG	1 cut(s)	248
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	70, 176
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	159
Hpy188I	TCNGA	2 cut(s)	33, 150
Hpy188III	TCNNGA	2 cut(s)	67, 173
Hpy8I	GTNNAC	1 cut(s)	159
HpyAV	CCTTC	2 cut(s)	38, 248
HpyCH4IV	ACGT	2 cut(s)	105, 119
HpyCH4V	TGCA	3 cut(s)	48, 159, 230
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 165
HpySE526I	ACGT	2 cut(s)	105, 119
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	70, 176
Kzo9I	GATC	2 cut(s)	150, 193
LpnPI	CCDG	2 cut(s)	167, 210
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	1 cut(s)	90
MaeII	ACGT	2 cut(s)	105, 119
MalI	GATC	2 cut(s)	152, 195
MboI	GATC	2 cut(s)	150, 193
MboII	GAAGA	1 cut(s)	113
MfeI	CAATTG	1 cut(s)	52
MflI	RGATCY	1 cut(s)	150
MhlI	GDGCHC	2 cut(s)	80, 161
MluCI	AATT	2 cut(s)	52, 83
MseI	TTAA	2 cut(s)	23, 132
MspCI	CTTAAG	1 cut(s)	22
MspI	CCGG	1 cut(s)	248
MunI	CAATTG	1 cut(s)	52
MwoI	GCNNNNNNNGC	2 cut(s)	14, 165
NdeII	GATC	2 cut(s)	150, 193
NlaIII	CATG	2 cut(s)	70, 176
PagI	TCATGA	2 cut(s)	66, 172
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	7
PsiI	TTATAA	1 cut(s)	215
PspPI	GGNCC	1 cut(s)	189
PsuI	RGATCY	1 cut(s)	150
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	2 cut(s)	23, 132
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	150, 193
Sau96I	GGNCC	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	80, 161
SetI	ASST	5 cut(s)	108, 122, 126, 146, 229
SinI	GGWCC	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	22
SmoI	CTYRAG	1 cut(s)	22
Sse9I	AATT	2 cut(s)	52, 83
SspMI	CTAG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	124
TaiI	ACGT	2 cut(s)	108, 122
TaqI	TCGA	1 cut(s)	219
TaqII	GACCGA	1 cut(s)	206
TasI	AATT	2 cut(s)	52, 83
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	2 cut(s)	23, 132
Tru9I	TTAA	2 cut(s)	23, 132
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	1 cut(s)	5
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	161
Vha464I	CTTAAG	1 cut(s)	22
VneI	GTGCAC	1 cut(s)	157
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	83
XspI	CTAG	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.