Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0006725

Physical Location & Seq

Genomic Coordinates Forward (+)

8488687 .. 8492932

Gene Structure 4246 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G148700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGGAGAGCGTAAGGTTCTGAACAAGTACTATCCACCGGACTTCGACCCATCGAAGCTGCCCAGAATTAGGAGGCCCAAGAATCAACAGATAAAGGTGCGGATGATGCTTCCCATGAGCATTCGCTGCAATACTTGTGGCAATTACATCTACAAAGGCACCAAATTCAATTCTCGCAAAGAAGATGTCGTCGGAGAGACATATTTGGGAATTCAAATATTTAGATTTTACTTCAAATGTACCAAGTGCTCCGCTGAGCTCGCGATGAAGACAGACCCACAGAATTCAGACTATGTTGTTGAGGCCGGTGCTACACGAAATTTTGAACCCTGGCGCAATGAGGATGAGGAATTAGATAAGGAGAAACAAAAAAGGGAGTCTGAAGAAATGGGAGATGCGATGAAATCCTTGGAGAACAGAACCCAGGATTCCAAAAGAGAGATGGACATCATGGCTGCTTTGGATGAGATGAAGTCCATGAAGGCCAGACATTTTAATGTGAGTGTGGATGATATGTTGGAGGCTTTGAAACATACAGCTGCTTTAAAGGAGAAAATGATTGAAGAGGAGGATGAAGCAGCCTTAAAATCAGTACTATTCCATAACTCAAAAGATTTTGTTCGAAGGGTTCCTGATGAAGATATTGAGCCTTTAAGTGGCAACGGTGAAACATCAGATCATAATTTCAAGAGGCCAAAGCTTACCCAAGACGCACCTAGCAACCCGACAGATTGGTTGACAAAAAGCAGTATTTTTAATATCTCAAGCAAGAGAGGAAATCAAAATGGCTCAGAAGCTCCAACTGATGCTAAATTCACTTTGAAGTCGTCAACTGTTAGGGTTTCTATAGTTAAAAAACCAGTTGTGGCTGAAGGTAACAAGTCCGCGGAAGGAGAAGATAAGAAACAATTGGGAGAGGAGGTTCAAAATTCTACAAAACCAAATGATGAAAAGCAAGAGGGAGAGAATAAAACCAATGTTACAAGCAATGTACTACAGTCATTGTGCCAAAACTATGATAGTGATGATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF572

Protein Analysis

345

Amino Acids

39.31

Weight (kDa)

5.71

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17130 AT1G17130 AT2G29430
fragaria_vesca	FvH4_1g15490 FvH4_3g16590
malus_domestica	MD05G1208800.v1.1 MD10G1195300.v1.1
prunus_persica	Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1 Prupe.4G148700_v2.0.a1
pyrus_communis	pycom05g19470 pycom05g19490 pycom10g16900
rosa_chinensis	RchiOBHm_Chr5g0027661
rosa_laevigata	RLG00000033035
rosa_multiflora	Rmu_sc0001647.1_g000019 Rmu_sc0001647.1_g000029 Rmu_sc0017546.1_g000001 Rmu_sc0032492.1_g000001
rosa_roxburghii	Rroxscaffold_1G00051890
rosa_rugosa	Rorug05G0100300
rosa_samantha	Rh5AG194800 Rh5BG193000 Rh5DG194900
rosa_wichuraiana	Rw5G017750 Rw5G017780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	158
AccII	CGCG	2 cut(s)	263, 887
AciI	CCGC	4 cut(s)	100, 252, 885, 887
AcsI	RAATTY	6 cut(s)	164, 210, 283, 319, 812, 928
AcuI	CTGAAG	2 cut(s)	402, 891
AfaI	GTAC	4 cut(s)	29, 241, 594, 993
AfiI	CCNNNNNNNGG	2 cut(s)	69, 656
AgsI	TTSAA	9 cut(s)	169, 215, 235, 326, 529, 563, 688, 823, 926
AjnI	CCWGG	2 cut(s)	329, 423
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
AluBI	AGCT	5 cut(s)	58, 259, 539, 700, 797
AluI	AGCT	5 cut(s)	58, 259, 539, 700, 797
Alw21I	GWGCWC	2 cut(s)	251, 261
Alw26I	GTCTC	1 cut(s)	191
AoxI	GGCC	4 cut(s)	74, 303, 483, 692
ApeKI	GCWGC	5 cut(s)	58, 126, 455, 539, 578
ApoI	RAATTY	6 cut(s)	164, 210, 283, 319, 812, 928
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AspLEI	GCGC	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	677
AsuII	TTCGAA	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	275
Bbv12I	GWGCWC	2 cut(s)	251, 261
BbvI	GCAGC	5 cut(s)	45, 113, 442, 526, 590
BccI	CCATC	2 cut(s)	58, 436
BciT130I	CCWGG	2 cut(s)	331, 425
BcoDI	GTCTC	1 cut(s)	191
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	2 cut(s)	846, 995
BisI	GCNGC	5 cut(s)	59, 127, 456, 540, 579
BlpI	GCTNAGC	1 cut(s)	255
BlsI	GCNGC	5 cut(s)	60, 128, 457, 541, 580
BmcAI	AGTACT	2 cut(s)	29, 594
Bme1390I	CCNGG	2 cut(s)	331, 425
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	160, 630
BmrFI	CCNGG	2 cut(s)	331, 425
BmsI	GCATC	3 cut(s)	96, 385, 796
BpiI	GAAGAC	1 cut(s)	275
Bpu1102I	GCTNAGC	1 cut(s)	255
Bpu14I	TTCGAA	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	748
BsaBI	GATNNNNATC	1 cut(s)	446
BsaJI	CCNNGG	4 cut(s)	329, 408, 423, 885
BsaWI	WCCGGW	1 cut(s)	37
BsaXI	ACNNNNNCTCC	2 cut(s)	906, 936
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 656
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	1 cut(s)	860
Bse3DI	GCAATG	2 cut(s)	343, 994
Bse8I	GATNNNNATC	1 cut(s)	446
BseBI	CCWGG	2 cut(s)	331, 425
BseDI	CCNNGG	4 cut(s)	329, 408, 423, 885
BseGI	GGATG	5 cut(s)	108, 349, 469, 514, 577
BseJI	GATNNNNATC	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	69, 656
BseMI	GCAATG	2 cut(s)	343, 994
BseMII	CTCAG	2 cut(s)	246, 804
BseNI	ACTGG	1 cut(s)	860
BseRI	GAGGAG	2 cut(s)	581, 932
BseXI	GCAGC	5 cut(s)	45, 113, 442, 526, 590
Bsh1236I	CGCG	2 cut(s)	263, 887
BshFI	GGCC	4 cut(s)	76, 305, 485, 694
BshNI	GGYRCC	1 cut(s)	158
BsiHKAI	GWGCWC	2 cut(s)	251, 261
BsiSI	CCGG	2 cut(s)	38, 306
BslI	CCNNNNNNNGG	2 cut(s)	69, 656
BsmAI	GTCTC	1 cut(s)	191
BsmI	GAATGC	1 cut(s)	120
BsnI	GGCC	4 cut(s)	76, 305, 485, 694
Bsp119I	TTCGAA	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	251, 261
Bsp143I	GATC	1 cut(s)	676
Bsp1720I	GCTNAGC	1 cut(s)	255
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	4 cut(s)	100, 252, 885, 887
BspANI	GGCC	4 cut(s)	76, 305, 485, 694
BspCNI	CTCAG	2 cut(s)	247, 803
BspFNI	CGCG	2 cut(s)	263, 887
BspLI	GGNNCC	2 cut(s)	160, 630
BspT104I	TTCGAA	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	158
BsrDI	GCAATG	2 cut(s)	343, 994
BsrFI	RCCGGY	1 cut(s)	305
BsrI	ACTGG	1 cut(s)	860
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	4 cut(s)	329, 408, 423, 885
BssMI	GATC	1 cut(s)	676
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	331, 425
Bst4CI	ACNGT	3 cut(s)	665, 835, 999
Bst6I	CTCTTC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	126
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	261
BstDEI	CTNAG	2 cut(s)	255, 790
BstDSI	CCRYGG	1 cut(s)	885
BstF5I	GGATG	5 cut(s)	108, 349, 469, 514, 577
BstFNI	CGCG	2 cut(s)	263, 887
BstHHI	GCGC	1 cut(s)	336
BstKTI	GATC	1 cut(s)	679
BstMAI	GTCTC	1 cut(s)	191
BstMBI	GATC	1 cut(s)	676
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 126, 260
BstNI	CCWGG	2 cut(s)	331, 425
BstSCI	CCNGG	2 cut(s)	329, 423
BstSFI	CTRYAG	2 cut(s)	846, 995
BstUI	CGCG	2 cut(s)	263, 887
BstV1I	GCAGC	5 cut(s)	45, 113, 442, 526, 590
BstV2I	GAAGAC	1 cut(s)	275
BsuRI	GGCC	4 cut(s)	76, 305, 485, 694
BtgI	CCRYGG	1 cut(s)	885
BtgZI	GCGATG	2 cut(s)	278, 413
BtsCI	GGATG	5 cut(s)	108, 349, 469, 514, 577
BtuMI	TCGCGA	1 cut(s)	263
Cac8I	GCNNGC	1 cut(s)	261
CfoI	GCGC	1 cut(s)	336
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	1 cut(s)	75
Cfr42I	CCGCGG	1 cut(s)	888
CseI	GACGC	1 cut(s)	719
Csp6I	GTAC	4 cut(s)	28, 240, 593, 992
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	3 cut(s)	115, 451, 478
CviQI	GTAC	4 cut(s)	28, 240, 593, 992
DdeI	CTNAG	2 cut(s)	255, 790
DpnI	GATC	1 cut(s)	678
DpnII	GATC	1 cut(s)	676
DraI	TTTAAA	1 cut(s)	546
Eam1104I	CTCTTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	558
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	261
Eco53kI	GAGCTC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	402, 891
EcoICRI	GAGCTC	1 cut(s)	259
EcoRI	GAATTC	2 cut(s)	210, 283
EcoRII	CCWGG	2 cut(s)	329, 423
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	118, 454, 481
FatI	CATG	3 cut(s)	114, 450, 477
Fnu4HI	GCNGC	5 cut(s)	59, 127, 456, 540, 579
FokI	GGATG	5 cut(s)	115, 356, 476, 521, 584
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	5 cut(s)	59, 127, 456, 540, 579
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	335
GluI	GCNGC	5 cut(s)	59, 127, 456, 540, 579
HaeIII	GGCC	4 cut(s)	76, 305, 485, 694
HapII	CCGG	2 cut(s)	38, 306
HgaI	GACGC	1 cut(s)	719
HhaI	GCGC	1 cut(s)	336
Hin1II	CATG	3 cut(s)	118, 454, 481
Hin6I	GCGC	1 cut(s)	334
HinP1I	GCGC	1 cut(s)	334
HincII	GTYRAC	2 cut(s)	738, 831
HindII	GTYRAC	2 cut(s)	738, 831
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	3 cut(s)	82, 377, 428
HpaII	CCGG	2 cut(s)	38, 306
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	2 cut(s)	738, 831
Hpy188I	TCNGA	6 cut(s)	21, 194, 289, 382, 676, 793
Hpy188III	TCNNGA	3 cut(s)	262, 632, 688
Hpy8I	GTNNAC	2 cut(s)	738, 831
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	4 cut(s)	475, 618, 866, 884
HpyCH4III	ACNGT	3 cut(s)	665, 835, 999
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 126, 260
HpyF3I	CTNAG	2 cut(s)	255, 790
Hsp92II	CATG	3 cut(s)	118, 454, 481
HspAI	GCGC	1 cut(s)	334
KspI	CCGCGG	1 cut(s)	888
Kzo9I	GATC	1 cut(s)	676
LmnI	GCTCC	2 cut(s)	254, 802
Lsp1109I	GCAGC	5 cut(s)	45, 113, 442, 526, 590
LweI	GCATC	3 cut(s)	96, 385, 796
MaeI	CTAG	1 cut(s)	717
MaeIII	GTNAC	2 cut(s)	875, 979
MalI	GATC	1 cut(s)	678
MboI	GATC	1 cut(s)	676
MboII	GAAGA	6 cut(s)	194, 280, 395, 575, 650, 908
MfeI	CAATTG	1 cut(s)	908
MhlI	GDGCHC	2 cut(s)	251, 261
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	3 cut(s)	172, 498, 824
MseI	TTAA	6 cut(s)	495, 545, 584, 653, 756, 852
MslI	CAYNNNNRTG	1 cut(s)	495
MspA1I	CMGCKG	3 cut(s)	254, 539, 887
MspI	CCGG	2 cut(s)	38, 306
MspR9I	CCNGG	2 cut(s)	331, 425
MunI	CAATTG	1 cut(s)	908
Mva1269I	GAATGC	1 cut(s)	120
MvaI	CCWGG	2 cut(s)	331, 425
MvnI	CGCG	2 cut(s)	263, 887
MwoI	GCNNNNNNNGC	3 cut(s)	106, 126, 260
NdeII	GATC	1 cut(s)	676
NlaIII	CATG	3 cut(s)	118, 454, 481
NlaIV	GGNNCC	2 cut(s)	160, 630
NruI	TCGCGA	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	622
PctI	GAATGC	1 cut(s)	120
PfeI	GAWTC	2 cut(s)	82, 428
PkrI	GCNGC	5 cut(s)	60, 128, 457, 541, 580
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	329, 423
PspGI	CCWGG	2 cut(s)	329, 423
PspN4I	GGNNCC	2 cut(s)	160, 630
PspPI	GGNCC	1 cut(s)	75
PvuII	CAGCTG	1 cut(s)	539
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	4 cut(s)	29, 241, 594, 993
RsaNI	GTAC	4 cut(s)	28, 240, 593, 992
RseI	CAYNNNNRTG	1 cut(s)	495
SacI	GAGCTC	1 cut(s)	261
SacII	CCGCGG	1 cut(s)	888
SaqAI	TTAA	6 cut(s)	495, 545, 584, 653, 756, 852
SatI	GCNGC	5 cut(s)	59, 127, 456, 540, 579
Sau3AI	GATC	1 cut(s)	676
Sau96I	GGNCC	1 cut(s)	75
ScaI	AGTACT	2 cut(s)	29, 594
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	2 cut(s)	331, 425
SduI	GDGCHC	2 cut(s)	251, 261
SfaNI	GCATC	3 cut(s)	96, 385, 796
SfcI	CTRYAG	2 cut(s)	846, 995
Sfr303I	CCGCGG	1 cut(s)	888
SfuI	TTCGAA	1 cut(s)	622
SgrBI	CCGCGG	1 cut(s)	888
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	1 cut(s)	763
SmoI	CTYRAG	1 cut(s)	763
SsiI	CCGC	4 cut(s)	100, 252, 885, 887
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	717
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	329, 423
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	665, 835, 999
TaqI	TCGA	3 cut(s)	45, 53, 622
TatI	WGTACW	3 cut(s)	27, 592, 991
TfiI	GAWTC	2 cut(s)	82, 428
Tru1I	TTAA	6 cut(s)	495, 545, 584, 653, 756, 852
Tru9I	TTAA	6 cut(s)	495, 545, 584, 653, 756, 852
TseI	GCWGC	5 cut(s)	58, 126, 455, 539, 578
TspDTI	ATGAA	7 cut(s)	281, 416, 485, 494, 588, 651, 963
XapI	RAATTY	6 cut(s)	164, 210, 283, 319, 812, 928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	717
ZrmI	AGTACT	2 cut(s)	29, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.