Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Forward (+)

5982145 .. 5984013

Gene Structure 1869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGTCCATGAAACACGTTCATCTTTTCCGTCGTTATCTCTCAATCGTTTTCACTCTCTTTCAACGCTTAATTTCATGTTTCTTCGATTTTCCGATACTGATCAAAATCGCAGATTCGTTCTTATCTCTGTATTTCTTAGTTTTCTGCGATCTCCGACCCGTAACCGTCGATCTAGACGACGGAGAAACCACAGTCCATTTCTGGATCTCCGGCCACCGTAGAATCTCTCGGCAGAATCTCGTCATGCTCCATGGATACGGAGGAAACTCCAAATGGCAATTCGTTCATCAAGTCTCGGATCTCTCGAAATCGTTTAATCTCTTCATCCCCGATTTGGTCTTCTTCGGAAAATCGTATTCGAAGAATAGAGATCGGAGCGTTGAGATTCAGGCGAGGAGCGTCGTCGGAGGATTGAAGAAACTGGGATGCGTTGAAGGAGGAGGAGGAATATCGATTTATTCGATTAGTTACGGTGGATTTGTGGCGTATAAAATGGCGGAGATTTGGCCGGCGATGGTTGAGAAATTGGTGATTGTGAGTAGTGGAGTGGGATTTACACAGCAGCAGAAGACGGCAGAATTGAAAAAACACGGCGGAGATTGTTCGAAGATTTTAGTTCCGAAAACTCCGATGGATCTACGGTTGCTGATTAAGATATCTATGAATACTGGTTTAACGTTCGTCGATTGGGTTCCAGACTTTTTCCTTTCCCAATTCATCGCTGTAATGTATGAGAAAAATCGGCAGGAGCTTCTTGAGCTAGCTAAGAATTTGTTGGAACGAGAGGAGGAACCAGAATTGCCTGTAATATCCCAGAAAACGTTAATCGTTTGGGGAGACAAGGACAAGGTGTTTCCCTTGGAGCATGCTTATCGGCTGCAAAGGCATTTACAGAGTTCAAGATTAGAGATAATAAAGGAAACAGGACACGCTGTTAACATTGAAGCACCAACTACTCTTAATAATTTTATTACTTCGTTTGTCTTAAGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1

Protein Analysis

332

Amino Acids

37.85

Weight (kDa)

8.89

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	78 - 316	2.2e-06	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	81 - 318	2.1e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	81 - 320	5.4e-10	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	500, 597
AclI	AACGTT	2 cut(s)	680, 824
AclWI	GGATC	3 cut(s)	215, 309, 645
AcoI	YGGCCR	2 cut(s)	214, 509
AcsI	RAATTY	1 cut(s)	772
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	337
AflII	CTTAAG	1 cut(s)	988
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	6 cut(s)	65, 418, 437, 586, 903, 947
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AluBI	AGCT	3 cut(s)	754, 763, 767
AluI	AGCT	3 cut(s)	754, 763, 767
Alw26I	GTCTC	2 cut(s)	301, 834
AlwI	GGATC	3 cut(s)	215, 309, 645
AoxI	GGCC	2 cut(s)	214, 509
ApeKI	GCWGC	2 cut(s)	565, 880
ApoI	RAATTY	1 cut(s)	772
AsuHPI	GGTGA	1 cut(s)	544
AsuII	TTCGAA	2 cut(s)	362, 608
AsuNHI	GCTAGC	1 cut(s)	763
BbsI	GAAGAC	2 cut(s)	334, 578
BbvI	GCAGC	2 cut(s)	577, 867
BccI	CCATC	2 cut(s)	511, 628
BceAI	ACGGC	2 cut(s)	591, 610
BcgI	CGANNNNNNTGC	2 cut(s)	857, 891
BciVI	GTATCC	1 cut(s)	251
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	301, 834
BfaI	CTAG	2 cut(s)	176, 764
BfrI	CTTAAG	1 cut(s)	988
BfuI	GTATCC	1 cut(s)	251
BisI	GCNGC	2 cut(s)	566, 881
BlsI	GCNGC	2 cut(s)	567, 882
BmiI	GGNNCC	2 cut(s)	696, 795
BmrI	ACTGGG	1 cut(s)	434
BmsI	GCATC	1 cut(s)	419
BmtI	GCTAGC	1 cut(s)	767
BmuI	ACTGGG	1 cut(s)	434
BpiI	GAAGAC	2 cut(s)	334, 578
Bpu14I	TTCGAA	2 cut(s)	362, 608
BpuEI	CTTGAG	1 cut(s)	779
Bsa29I	ATCGAT	1 cut(s)	455
BsaBI	GATNNNNATC	2 cut(s)	101, 107
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	253, 861
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	2 cut(s)	429, 676
Bse8I	GATNNNNATC	2 cut(s)	101, 107
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	2 cut(s)	253, 861
BseGI	GGATG	2 cut(s)	327, 434
BseJI	GATNNNNATC	2 cut(s)	101, 107
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseNI	ACTGG	2 cut(s)	429, 676
BseRI	GAGGAG	4 cut(s)	412, 456, 459, 803
BseXI	GCAGC	2 cut(s)	577, 867
BshFI	GGCC	2 cut(s)	216, 511
BshVI	ATCGAT	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	213, 512
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	2 cut(s)	301, 834
BsnI	GGCC	2 cut(s)	216, 511
Bsp119I	TTCGAA	2 cut(s)	362, 608
Bsp143I	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
Bsp19I	CCATGG	1 cut(s)	253
BspACI	CCGC	2 cut(s)	500, 597
BspANI	GGCC	2 cut(s)	216, 511
BspDI	ATCGAT	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	696, 795
BspOI	GCTAGC	1 cut(s)	767
BspPI	GGATC	3 cut(s)	215, 309, 645
BspT104I	TTCGAA	2 cut(s)	362, 608
BspTI	CTTAAG	1 cut(s)	988
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	2 cut(s)	429, 676
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	2 cut(s)	253, 861
BssMI	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	253, 861
Bst4CI	ACNGT	5 cut(s)	169, 196, 221, 476, 645
Bst6I	CTCTTC	1 cut(s)	329
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	988
BstBI	TTCGAA	2 cut(s)	362, 608
BstC8I	GCNNGC	3 cut(s)	513, 765, 870
BstDEI	CTNAG	2 cut(s)	139, 768
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	327, 434
BstKTI	GATC	7 cut(s)	105, 154, 175, 210, 304, 376, 640
BstMAI	GTCTC	2 cut(s)	301, 834
BstMBI	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	760, 886
BstNSI	RCATGY	1 cut(s)	872
BstV1I	GCAGC	2 cut(s)	577, 867
BstV2I	GAAGAC	2 cut(s)	334, 578
BstX2I	RGATCY	3 cut(s)	207, 301, 637
BstYI	RGATCY	3 cut(s)	207, 301, 637
Bsu15I	ATCGAT	1 cut(s)	455
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	216, 511
BsuTUI	ATCGAT	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	253
BtgZI	GCGATG	2 cut(s)	530, 706
BtsCI	GGATG	2 cut(s)	327, 434
Cac8I	GCNNGC	3 cut(s)	513, 765, 870
Cfr10I	RCCGGY	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	1 cut(s)	391
CviAII	CATG	5 cut(s)	10, 78, 247, 254, 869
CviJI	RGCY	6 cut(s)	216, 511, 754, 763, 767, 880
CviKI_1	RGCY	6 cut(s)	216, 511, 754, 763, 767, 880
DdeI	CTNAG	2 cut(s)	139, 768
DpnI	GATC	7 cut(s)	104, 153, 174, 209, 303, 375, 639
DpnII	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
EaeI	YGGCCR	2 cut(s)	214, 509
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	2 cut(s)	515, 612
Eco130I	CCWWGG	2 cut(s)	253, 861
Eco32I	GATATC	1 cut(s)	660
EcoRV	GATATC	1 cut(s)	660
EcoT14I	CCWWGG	2 cut(s)	253, 861
ErhI	CCWWGG	2 cut(s)	253, 861
FaeI	CATG	5 cut(s)	13, 81, 250, 257, 872
FaiI	YATR	8 cut(s)	11, 79, 248, 255, 492, 665, 735, 870
FatI	CATG	5 cut(s)	9, 77, 246, 253, 868
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	2 cut(s)	566, 881
FokI	GGATG	2 cut(s)	314, 441
Fsp4HI	GCNGC	2 cut(s)	566, 881
FspBI	CTAG	2 cut(s)	176, 764
GluI	GCNGC	2 cut(s)	566, 881
HaeIII	GGCC	2 cut(s)	216, 511
HapII	CCGG	2 cut(s)	213, 512
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	5 cut(s)	13, 81, 250, 257, 872
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HinfI	GANTC	4 cut(s)	116, 225, 238, 388
HpaI	GTTAAC	1 cut(s)	940
HpaII	CCGG	2 cut(s)	213, 512
HphI	GGTGA	1 cut(s)	544
Hpy166II	GTNNAC	1 cut(s)	940
Hpy188I	TCNGA	8 cut(s)	96, 158, 301, 350, 378, 410, 624, 633
Hpy188III	TCNNGA	6 cut(s)	176, 205, 307, 698, 758, 903
Hpy8I	GTNNAC	1 cut(s)	940
Hpy99I	CGWCG	6 cut(s)	36, 173, 185, 407, 410, 689
HpyAV	CCTTC	1 cut(s)	431
HpyCH4III	ACNGT	5 cut(s)	169, 196, 221, 476, 645
HpyCH4IV	ACGT	3 cut(s)	18, 680, 824
HpyCH4V	TGCA	1 cut(s)	883
HpyF10VI	GCNNNNNNNGC	2 cut(s)	760, 886
HpyF3I	CTNAG	2 cut(s)	139, 768
HpySE526I	ACGT	3 cut(s)	18, 680, 824
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	5 cut(s)	13, 81, 250, 257, 872
KroI	GCCGGC	1 cut(s)	511
KroNI	GCCGGC	1 cut(s)	513
Ksp22I	TGATCA	1 cut(s)	102
KspAI	GTTAAC	1 cut(s)	940
Kzo9I	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
LmnI	GCTCC	5 cut(s)	255, 378, 399, 751, 865
Lsp1109I	GCAGC	2 cut(s)	577, 867
LweI	GCATC	1 cut(s)	419
MaeI	CTAG	2 cut(s)	176, 764
MaeII	ACGT	3 cut(s)	18, 680, 824
MaeIII	GTNAC	2 cut(s)	163, 470
MalI	GATC	7 cut(s)	104, 153, 174, 209, 303, 375, 639
MboI	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
MboII	GAAGA	8 cut(s)	76, 316, 334, 337, 376, 430, 583, 622
MflI	RGATCY	3 cut(s)	207, 301, 637
MluCI	AATT	8 cut(s)	72, 281, 527, 581, 716, 772, 800, 967
MmeI	TCCRAC	3 cut(s)	181, 388, 759
MnlI	CCTC	8 cut(s)	257, 390, 404, 434, 437, 440, 781, 784
MroNI	GCCGGC	1 cut(s)	511
MseI	TTAA	8 cut(s)	71, 318, 654, 677, 827, 939, 963, 989
MspCI	CTTAAG	1 cut(s)	988
MspI	CCGG	2 cut(s)	213, 512
MwoI	GCNNNNNNNGC	2 cut(s)	760, 886
NaeI	GCCGGC	1 cut(s)	513
NcoI	CCATGG	1 cut(s)	253
NdeII	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
NgoMIV	GCCGGC	1 cut(s)	511
NheI	GCTAGC	1 cut(s)	763
NlaIII	CATG	5 cut(s)	13, 81, 250, 257, 872
NlaIV	GGNNCC	2 cut(s)	696, 795
NmeAIII	GCCGAG	1 cut(s)	211
NspI	RCATGY	1 cut(s)	872
NspV	TTCGAA	2 cut(s)	362, 608
PaeI	GCATGC	1 cut(s)	872
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 305, 461
PdiI	GCCGGC	1 cut(s)	513
PfeI	GAWTC	4 cut(s)	116, 225, 238, 388
PkrI	GCNGC	2 cut(s)	567, 882
Psp1406I	AACGTT	2 cut(s)	680, 824
PspN4I	GGNNCC	2 cut(s)	696, 795
PsuI	RGATCY	3 cut(s)	207, 301, 637
SaqAI	TTAA	8 cut(s)	71, 318, 654, 677, 827, 939, 963, 989
SatI	GCNGC	2 cut(s)	566, 881
Sau3AI	GATC	7 cut(s)	102, 151, 172, 207, 301, 373, 637
SetI	ASST	7 cut(s)	21, 683, 756, 765, 769, 827, 855
SfaNI	GCATC	1 cut(s)	419
SfuI	TTCGAA	2 cut(s)	362, 608
SmlI	CTYRAG	2 cut(s)	758, 988
SmoI	CTYRAG	2 cut(s)	758, 988
SphI	GCATGC	1 cut(s)	872
Sse9I	AATT	8 cut(s)	72, 281, 527, 581, 716, 772, 800, 967
SsiI	CCGC	2 cut(s)	500, 597
SspMI	CTAG	2 cut(s)	176, 764
StyI	CCWWGG	2 cut(s)	253, 861
TaaI	ACNGT	5 cut(s)	169, 196, 221, 476, 645
TaiI	ACGT	3 cut(s)	21, 683, 827
TaqI	TCGA	8 cut(s)	87, 171, 308, 362, 455, 464, 608, 687
TasI	AATT	8 cut(s)	72, 281, 527, 581, 716, 772, 800, 967
TfiI	GAWTC	4 cut(s)	116, 225, 238, 388
Tru1I	TTAA	8 cut(s)	71, 318, 654, 677, 827, 939, 963, 989
Tru9I	TTAA	8 cut(s)	71, 318, 654, 677, 827, 939, 963, 989
TseI	GCWGC	2 cut(s)	565, 880
TspDTI	ATGAA	7 cut(s)	11, 26, 66, 278, 316, 680, 709
TspGWI	ACGGA	3 cut(s)	20, 198, 276
Vha464I	CTTAAG	1 cut(s)	988
XapI	RAATTY	1 cut(s)	772
XbaI	TCTAGA	1 cut(s)	175
XceI	RCATGY	1 cut(s)	872
XspI	CTAG	2 cut(s)	176, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.