AT1G72620

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001654
Physical Location & Seq
Forward (+)
27341021 .. 27342466
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72620.1

Sequence Viewer

Length: 1008 bp
ATGGTGTCAATGAAAAGCTTCGTTCATATTCTCCGTCGATACATCTCCATTGCAATCACTCTCTTCTATAACCTCATTTGGTGTTTATTCGACAATTTCGATTACCCGATCCTAATCAAGCTCGCTGATACATTCTTATCATTATATTTCCTAATCTTCTGCGATCTCCGTCCAATCACCGTCGATTTAAACGATGGAGAAACCACATTACATTTCTGGATCTCCGGCCACCGTAAAATCAACCGCCCTAACCTCGTCATGTTACACGGCTACGGAGGAAATTCGAAATGGCAGTTCATTCATCAAGTCTCAGATCTATCGAAATCGTTTAATCTCTTTATCCCTGATCTTGTGTTCTTCGGGAAATCGTACTCGAGAAACACCGATCGGACTATCGAGTTTCAGGCGAGGAGTATCGTCGGAGGTTTGAAGAGGTTAGGTTGTGGTGACGGAGATTTATCGGTTTATTCAATTAGTTACGGTGGATTTGTTGCGTACCGGATAGCGAAGATTTGGCCGGAGATGATTGAGAAATTGGTGATTGTGAGTAGTGGAGTTGGGTTTACACAACAGCAAAAGATGACGGAGATGAAAAAACACGGCGGAGATGTATCGGAGATTCTTGTTCCGAGTAATCCGAGAGATCTACGGTTGTTAGTTAAGGTTTCGATGAATACAGGTATCAGATTTCTTGACTGGGTTCCAGATTTCATCCTCTCCCAATTCATCGCTGTGATGTATGAGACAAATCGGCAAGAGCTTGTTGATTTAGCTAAGAATTTGCTGGAAAGAGAAGAGGAGCCAGAGTTATTTTCAATATCACAGAGAACGTTAATCGTTTGGGGTGATAAGGATAATGTGTTTCCGTTGGAGCATGGACGTCGTCTACAAAGGCATTTGCCGAATTCGAGTTTAGAGGTATTGAAGGAAATTGGACATGGTGTGAACATTGAAGCACCAACTACTCTTAACAATTTGATTATCTCGTTTGTTTTAGGTGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

335

Amino Acids

38.44

Weight (kDa)

7.13

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 83 - 320 1.6e-14 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 85 - 322 6.8e-09 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 883
AccI GTMKAC 1 cut(s) 886
AciI CCGC 2 cut(s) 244, 603
AclI AACGTT 1 cut(s) 830
AclWI GGATC 2 cut(s) 103, 227
AcoI YGGCCR 2 cut(s) 226, 515
AcsI RAATTY 3 cut(s) 280, 778, 904
AcyI GRCGYC 1 cut(s) 880
AfaI GTAC 2 cut(s) 371, 497
AgsI TTSAA 5 cut(s) 430, 471, 816, 925, 953
AluBI AGCT 4 cut(s) 18, 121, 760, 773
AluI AGCT 4 cut(s) 18, 121, 760, 773
Alw26I GTCTC 2 cut(s) 313, 737
AlwI GGATC 2 cut(s) 103, 227
Ama87I CYCGRG 1 cut(s) 373
AoxI GGCC 2 cut(s) 226, 515
ApoI RAATTY 3 cut(s) 280, 778, 904
Asp700I GAANNNNTTC 1 cut(s) 17
AsuHPI GGTGA 4 cut(s) 169, 458, 550, 857
AsuII TTCGAA 1 cut(s) 284
AvaI CYCGRG 1 cut(s) 373
BccI CCATC 1 cut(s) 188
BceAI ACGGC 2 cut(s) 283, 616
BcgI CGANNNNNNTGC 2 cut(s) 863, 897
BcoDI GTCTC 2 cut(s) 313, 737
BglII AGATCT 2 cut(s) 313, 643
BmeT110I CYCGRG 1 cut(s) 373
BmiI GGNNCC 2 cut(s) 702, 801
BmrI ACTGGG 1 cut(s) 706
BmuI ACTGGG 1 cut(s) 706
Bpu14I TTCGAA 1 cut(s) 284
BsaBI GATNNNNATC 1 cut(s) 113
BsaHI GRCGYC 1 cut(s) 880
BsaWI WCCGGW 1 cut(s) 498
BsaXI ACNNNNNCTCC 2 cut(s) 791, 821
Bse1I ACTGG 1 cut(s) 701
Bse3DI GCAATG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 113
BseGI GGATG 1 cut(s) 711
BseJI GATNNNNATC 1 cut(s) 113
BseMI GCAATG 1 cut(s) 48
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 701
BseRI GAGGAG 2 cut(s) 424, 812
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 2 cut(s) 228, 517
BsiEI CGRYCG 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 373
BsiSI CCGG 3 cut(s) 225, 499, 518
BsmAI GTCTC 2 cut(s) 313, 737
BsnI GGCC 2 cut(s) 228, 517
BsoBI CYCGRG 1 cut(s) 373
Bsp119I TTCGAA 1 cut(s) 284
Bsp143I GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
BspACI CCGC 2 cut(s) 244, 603
BspANI GGCC 2 cut(s) 228, 517
BspCNI CTCAG 1 cut(s) 323
BspLI GGNNCC 2 cut(s) 702, 801
BspPI GGATC 2 cut(s) 103, 227
BspT104I TTCGAA 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 701
BssMI GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
BssNI GRCGYC 1 cut(s) 880
Bst4CI ACNGT 4 cut(s) 181, 233, 482, 651
Bst6I CTCTTC 3 cut(s) 68, 425, 789
BstACI GRCGYC 1 cut(s) 880
BstBI TTCGAA 1 cut(s) 284
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 310, 774
BstF5I GGATG 1 cut(s) 711
BstKTI GATC 7 cut(s) 111, 166, 222, 316, 349, 388, 646
BstMAI GTCTC 2 cut(s) 313, 737
BstMBI GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
BstMCI CGRYCG 1 cut(s) 388
BstX2I RGATCY 3 cut(s) 219, 313, 643
BstYI RGATCY 3 cut(s) 219, 313, 643
BsuRI GGCC 2 cut(s) 228, 517
BtgZI GCGATG 1 cut(s) 712
BtsCI GGATG 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 123
Csp6I GTAC 2 cut(s) 370, 496
CviAII CATG 3 cut(s) 259, 875, 938
CviJI RGCY 8 cut(s) 18, 121, 228, 270, 517, 760, 773, 802
CviKI_1 RGCY 8 cut(s) 18, 121, 228, 270, 517, 760, 773, 802
CviQI GTAC 2 cut(s) 370, 496
DdeI CTNAG 2 cut(s) 310, 774
DpnI GATC 7 cut(s) 110, 165, 221, 315, 348, 387, 645
DpnII GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
DraI TTTAAA 1 cut(s) 189
EaeI YGGCCR 2 cut(s) 226, 515
Eam1104I CTCTTC 3 cut(s) 68, 425, 789
EarI CTCTTC 3 cut(s) 68, 425, 789
EciI GGCGGA 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 904
FaeI CATG 3 cut(s) 262, 878, 941
FaiI YATR 7 cut(s) 27, 69, 145, 260, 741, 876, 939
FatI CATG 3 cut(s) 258, 874, 937
FblI GTMKAC 1 cut(s) 886
FokI GGATG 1 cut(s) 698
HaeIII GGCC 2 cut(s) 228, 517
HapII CCGG 3 cut(s) 225, 499, 518
Hin1I GRCGYC 1 cut(s) 880
Hin1II CATG 3 cut(s) 262, 878, 941
HindIII AAGCTT 1 cut(s) 16
HinfI GANTC 1 cut(s) 619
HpaII CCGG 3 cut(s) 225, 499, 518
HphI GGTGA 4 cut(s) 169, 458, 550, 857
Hpy166II GTNNAC 3 cut(s) 564, 887, 946
Hpy188I TCNGA 7 cut(s) 313, 390, 422, 616, 630, 639, 686
Hpy188III TCNNGA 5 cut(s) 217, 361, 375, 692, 704
Hpy8I GTNNAC 3 cut(s) 564, 887, 946
Hpy99I CGWCG 4 cut(s) 39, 185, 422, 885
HpyAV CCTTC 1 cut(s) 919
HpyCH4III ACNGT 4 cut(s) 181, 233, 482, 651
HpyCH4IV ACGT 2 cut(s) 830, 880
HpyCH4V TGCA 1 cut(s) 53
HpyF3I CTNAG 2 cut(s) 310, 774
HpySE526I ACGT 2 cut(s) 830, 880
Hsp92I GRCGYC 1 cut(s) 880
Hsp92II CATG 3 cut(s) 262, 878, 941
Kzo9I GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
LmnI GCTCC 2 cut(s) 799, 871
MaeII ACGT 2 cut(s) 830, 880
MaeIII GTNAC 3 cut(s) 261, 446, 476
MalI GATC 7 cut(s) 110, 165, 221, 315, 348, 387, 645
MboI GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
MboII GAAGA 6 cut(s) 55, 148, 349, 442, 520, 806
MflI RGATCY 3 cut(s) 219, 313, 643
MluCI AATT 9 cut(s) 94, 280, 471, 533, 722, 778, 904, 930, 973
MmeI TCCRAC 2 cut(s) 400, 849
MnlI CCTC 9 cut(s) 83, 263, 269, 402, 416, 426, 725, 790, 910
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 6 cut(s) 188, 330, 660, 833, 969, 1006
MslI CAYNNNNRTG 1 cut(s) 731
MspI CCGG 3 cut(s) 225, 499, 518
NdeII GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
NlaIII CATG 3 cut(s) 262, 878, 941
NlaIV GGNNCC 2 cut(s) 702, 801
NmuCI GTSAC 1 cut(s) 446
NspV TTCGAA 1 cut(s) 284
PaeR7I CTCGAG 1 cut(s) 373
PcsI WCGNNNNNNNCGW 2 cut(s) 96, 189
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 1 cut(s) 619
PflFI GACNNNGTC 1 cut(s) 882
Ple19I CGATCG 1 cut(s) 388
Psp1406I AACGTT 1 cut(s) 830
PspN4I GGNNCC 2 cut(s) 702, 801
PsuI RGATCY 3 cut(s) 219, 313, 643
PsyI GACNNNGTC 1 cut(s) 882
PvuI CGATCG 1 cut(s) 388
RsaI GTAC 2 cut(s) 371, 497
RsaNI GTAC 2 cut(s) 370, 496
RseI CAYNNNNRTG 1 cut(s) 731
SaqAI TTAA 6 cut(s) 188, 330, 660, 833, 969, 1006
Sau3AI GATC 7 cut(s) 108, 163, 219, 313, 346, 385, 643
Sfr274I CTCGAG 1 cut(s) 373
SfuI TTCGAA 1 cut(s) 284
SlaI CTCGAG 1 cut(s) 373
SmiMI CAYNNNNRTG 1 cut(s) 731
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
Sse9I AATT 9 cut(s) 94, 280, 471, 533, 722, 778, 904, 930, 973
SsiI CCGC 2 cut(s) 244, 603
TaaI ACNGT 4 cut(s) 181, 233, 482, 651
TaiI ACGT 2 cut(s) 833, 883
TasI AATT 9 cut(s) 94, 280, 471, 533, 722, 778, 904, 930, 973
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 6 cut(s) 188, 330, 660, 833, 969, 1006
Tru9I TTAA 6 cut(s) 188, 330, 660, 833, 969, 1006
TseFI GTSAC 1 cut(s) 446
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 8 cut(s) 14, 26, 286, 290, 605, 686, 700, 715
TspGWI ACGGA 6 cut(s) 23, 158, 288, 465, 599, 855
Tth111I GACNNNGTC 1 cut(s) 882
XapI RAATTY 3 cut(s) 280, 778, 904
XhoI CTCGAG 1 cut(s) 373
XmiI GTMKAC 1 cut(s) 886
XmnI GAANNNNTTC 1 cut(s) 17
ZraI GACGTC 1 cut(s) 881
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.