Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Forward (+)

15648820 .. 15650711

Gene Structure 1892 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1181900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCTTACCCAAAATTTTCCAATGTCCTCTCCTTCTACCTTGCAACAATCATAGCCATTTCCCAATTCTTGATTTCAATTTTACCTTTGCTGAATCCAATCACGCTCCTAATCACAGTTGCAGATTTACTTATATCAGTATATTTCAGGTCGTGTGGTCTTTGTCCCTGCACAGTTGAATTAGATGATCAAACCACGATGCACTTTTGGGTTGCAAATCCTAGGAGGTCCCAGAAGCCTGCCCTAGTAATGCTTCATGGGTATGGTGGCAATTCAAAGTGGCAGTTCATCCATCAGGTGGGCTCTCTCTCTCAAAGGTTCAATCTGTATGTGCCTGACCTACTGTTCTTTGGCGACTCCTATACAACTAGGCTTGAAAGGACTGAGATCTTCCAAGCAAAATGTGTGGCAGAAGGGTTGAAGAGATTAGGGTTGGACAGATTTTCTGTGTACTCCATAAGTTACGGAGGGTTCGTGGCGTATTGGATGGCGGAGATGTACCCGGAGTTGGTGGAGAAGACTGTGGTTGTGAGTTGTGGGATTGGAATGACGGAGGAGCAGAAGAGAGAGCAGCTCAATAAGGTTGGAAGCAATGCATTGAATCTCCTTGTGCCTCAAAGTGCTCATGATCTACGGCTCCTGGTGAATCTATCAGTGCATAAACCTGGCCCTTCTAAGTGGGTCCCTGACATTTTCCTTCGTGGGTTCATCAATGTGACCTATAAACAACACAGGAAGGAGAAATTAGAGTTGGCAGAGCACTTGCTGAGGAAAAAAGAAGATCCAGACCTTCCTATTCTAACTCAGGAAACACTGATAATTTGGGGTGACAAGGATGAAGTCTTCCCTGTGTACTTGGCCTATCAGCTGCAAAGGCAGTTGGGACCAAAATCAAAGGTGGAAATAATCAAGGACACAGGTCATGCAGTAAATATGGATTCACCCACTTCCCTGAATTCTCTTATAACTTCATTTGTTTTAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

329

Amino Acids

37.22

Weight (kDa)

8.17

Isoelectric Point (pI)

39.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 315	2.4e-19	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 315	2.4e-11	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	965
AccB7I	CCANNNNNTGG	1 cut(s)	298
AciI	CCGC	1 cut(s)	491
AclWI	GGATC	1 cut(s)	776
AcsI	RAATTY	2 cut(s)	14, 955
AfaI	GTAC	3 cut(s)	452, 500, 854
AfiI	CCNNNNNNNGG	2 cut(s)	298, 508
AgsI	TTSAA	7 cut(s)	78, 179, 276, 322, 377, 421, 601
AjnI	CCWGG	2 cut(s)	639, 664
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
AluBI	AGCT	2 cut(s)	574, 868
AluI	AGCT	2 cut(s)	574, 868
Alw21I	GWGCWC	2 cut(s)	625, 762
AlwI	GGATC	1 cut(s)	776
AoxI	GGCC	2 cut(s)	667, 858
ApeKI	GCWGC	2 cut(s)	571, 868
ApoI	RAATTY	2 cut(s)	14, 955
AspA2I	CCTAGG	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	228, 668, 682, 884
AsuC2I	CCSGG	1 cut(s)	503
AsuHPI	GGTGA	3 cut(s)	655, 839, 933
AvaII	GGWCC	3 cut(s)	228, 682, 884
AvrII	CCTAGG	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	305
BbsI	GAAGAC	2 cut(s)	524, 835
Bbv12I	GWGCWC	2 cut(s)	625, 762
BbvCI	CCTCAGC	1 cut(s)	767
BbvI	GCAGC	2 cut(s)	583, 855
BccI	CCATC	2 cut(s)	300, 481
BceAI	ACGGC	1 cut(s)	650
BciT130I	CCWGG	2 cut(s)	641, 666
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	503
BfaI	CTAG	3 cut(s)	222, 245, 369
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	2 cut(s)	572, 869
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	2 cut(s)	573, 870
Bme1390I	CCNGG	3 cut(s)	503, 641, 666
Bme18I	GGWCC	3 cut(s)	228, 682, 884
BmgT120I	GGNCC	4 cut(s)	228, 668, 682, 884
BmiI	GGNNCC	5 cut(s)	230, 638, 683, 684, 885
BmrFI	CCNGG	3 cut(s)	503, 641, 666
BmsI	GCATC	1 cut(s)	189
BoxI	GACNNNNGTC	1 cut(s)	918
BpiI	GAAGAC	2 cut(s)	524, 835
BplI	GAGNNNNNCTC	2 cut(s)	558, 590
Bpu10I	CCTNAGC	1 cut(s)	767
BpuMI	CCSGG	1 cut(s)	503
BsaJI	CCNNGG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 508
Bse3DI	GCAATG	1 cut(s)	598
BseBI	CCWGG	2 cut(s)	641, 666
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	3 cut(s)	288, 492, 841
BseLI	CCNNNNNNNGG	2 cut(s)	298, 508
BseMI	GCAATG	1 cut(s)	598
BseMII	CTCAG	3 cut(s)	375, 758, 818
BseRI	GAGGAG	1 cut(s)	569
BseXI	GCAGC	2 cut(s)	583, 855
BsgI	GTGCAG	1 cut(s)	154
BshFI	GGCC	2 cut(s)	669, 860
BsiHKAI	GWGCWC	2 cut(s)	625, 762
BsiSI	CCGG	1 cut(s)	503
BslFI	GGGAC	4 cut(s)	150, 214, 668, 897
BslI	CCNNNNNNNGG	2 cut(s)	298, 508
BsmFI	GGGAC	4 cut(s)	150, 214, 668, 897
BsnI	GGCC	2 cut(s)	669, 860
Bsp1286I	GDGCHC	3 cut(s)	305, 625, 762
Bsp143I	GATC	4 cut(s)	187, 387, 628, 781
BspACI	CCGC	1 cut(s)	491
BspANI	GGCC	2 cut(s)	669, 860
BspCNI	CTCAG	3 cut(s)	376, 759, 817
BspHI	TCATGA	1 cut(s)	625
BspLI	GGNNCC	5 cut(s)	230, 638, 683, 684, 885
BspPI	GGATC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	598
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	4 cut(s)	187, 387, 628, 781
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	641, 666
Bst4CI	ACNGT	4 cut(s)	118, 175, 345, 523
Bst6I	CTCTTC	2 cut(s)	416, 557
BstC8I	GCNNGC	1 cut(s)	240
BstDEI	CTNAG	4 cut(s)	384, 675, 767, 804
BstF5I	GGATG	3 cut(s)	288, 492, 841
BstKTI	GATC	4 cut(s)	190, 390, 631, 784
BstMBI	GATC	4 cut(s)	187, 387, 628, 781
BstMWI	GCNNNNNNNGC	1 cut(s)	874
BstNI	CCWGG	2 cut(s)	641, 666
BstPAI	GACNNNNGTC	1 cut(s)	918
BstSCI	CCNGG	3 cut(s)	501, 639, 664
BstV1I	GCAGC	2 cut(s)	583, 855
BstV2I	GAAGAC	2 cut(s)	524, 835
BstX2I	RGATCY	2 cut(s)	387, 781
BstYI	RGATCY	2 cut(s)	387, 781
BsuRI	GGCC	2 cut(s)	669, 860
BtsCI	GGATG	3 cut(s)	288, 492, 841
BtsIMutI	CAGTG	2 cut(s)	660, 812
Cac8I	GCNNGC	1 cut(s)	240
CciI	TCATGA	1 cut(s)	625
Cfr13I	GGNCC	4 cut(s)	228, 668, 682, 884
Csp6I	GTAC	3 cut(s)	451, 499, 853
CspCI	CAANNNNNGTGG	2 cut(s)	387, 422
CviAII	CATG	3 cut(s)	257, 626, 923
CviQI	GTAC	3 cut(s)	451, 499, 853
DdeI	CTNAG	4 cut(s)	384, 675, 767, 804
DpnI	GATC	4 cut(s)	189, 389, 630, 783
DpnII	GATC	4 cut(s)	187, 387, 628, 781
Eam1104I	CTCTTC	2 cut(s)	416, 557
EarI	CTCTTC	2 cut(s)	416, 557
EciI	GGCGGA	1 cut(s)	506
Eco130I	CCWWGG	1 cut(s)	221
Eco24I	GRGCYC	1 cut(s)	305
Eco47I	GGWCC	3 cut(s)	228, 682, 884
EcoO109I	RGGNCCY	2 cut(s)	228, 682
EcoRI	GAATTC	1 cut(s)	955
EcoRII	CCWGG	2 cut(s)	639, 664
EcoT14I	CCWWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	3 cut(s)	260, 629, 926
FaqI	GGGAC	4 cut(s)	150, 214, 668, 897
FatI	CATG	3 cut(s)	256, 625, 922
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	572, 869
FokI	GGATG	3 cut(s)	275, 499, 848
FriOI	GRGCYC	1 cut(s)	305
Fsp4HI	GCNGC	2 cut(s)	572, 869
FspBI	CTAG	3 cut(s)	222, 245, 369
GluI	GCNGC	2 cut(s)	572, 869
HaeIII	GGCC	2 cut(s)	669, 860
HapII	CCGG	1 cut(s)	503
Hin1II	CATG	3 cut(s)	260, 629, 926
HinfI	GANTC	5 cut(s)	94, 356, 601, 646, 938
HpaII	CCGG	1 cut(s)	503
HphI	GGTGA	3 cut(s)	655, 839, 933
Hpy166II	GTNNAC	2 cut(s)	451, 853
Hpy188III	TCNNGA	4 cut(s)	70, 626, 785, 806
Hpy8I	GTNNAC	2 cut(s)	451, 853
HpyAV	CCTTC	6 cut(s)	43, 407, 681, 707, 730, 800
HpyCH4III	ACNGT	4 cut(s)	118, 175, 345, 523
HpyCH4V	TGCA	9 cut(s)	44, 122, 171, 202, 215, 596, 658, 871, 926
HpyF10VI	GCNNNNNNNGC	1 cut(s)	874
HpyF3I	CTNAG	4 cut(s)	384, 675, 767, 804
Hsp92II	CATG	3 cut(s)	260, 629, 926
KflI	GGGWCCC	1 cut(s)	682
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	187, 387, 628, 781
LmnI	GCTCC	3 cut(s)	111, 556, 642
Lsp1109I	GCAGC	2 cut(s)	583, 855
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	3 cut(s)	222, 245, 369
MaeIII	GTNAC	3 cut(s)	461, 715, 827
MalI	GATC	4 cut(s)	189, 389, 630, 783
MboI	GATC	4 cut(s)	187, 387, 628, 781
MboII	GAAGA	6 cut(s)	382, 433, 529, 574, 791, 835
MflI	RGATCY	2 cut(s)	387, 781
MhlI	GDGCHC	3 cut(s)	305, 625, 762
MluCI	AATT	8 cut(s)	14, 65, 78, 179, 271, 743, 819, 955
MlyI	GAGTC	1 cut(s)	350
MmeI	TCCRAC	2 cut(s)	414, 565
MnlI	CCTC	6 cut(s)	38, 219, 461, 547, 624, 762
Mph1103I	ATGCAT	1 cut(s)	598
MseI	TTAA	1 cut(s)	985
MslI	CAYNNNNRTG	2 cut(s)	261, 713
MspA1I	CMGCKG	1 cut(s)	868
MspI	CCGG	1 cut(s)	503
MspR9I	CCNGG	3 cut(s)	503, 641, 666
MvaI	CCWGG	2 cut(s)	641, 666
MwoI	GCNNNNNNNGC	1 cut(s)	874
NciI	CCSGG	1 cut(s)	503
NdeII	GATC	4 cut(s)	187, 387, 628, 781
NlaIII	CATG	3 cut(s)	260, 629, 926
NlaIV	GGNNCC	5 cut(s)	230, 638, 683, 684, 885
NmuCI	GTSAC	2 cut(s)	715, 827
NsiI	ATGCAT	1 cut(s)	598
PagI	TCATGA	1 cut(s)	625
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	94, 601, 646, 938
PflMI	CCANNNNNTGG	1 cut(s)	298
PkrI	GCNGC	2 cut(s)	573, 870
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PpuMI	RGGWCCY	2 cut(s)	228, 682
PshAI	GACNNNNGTC	1 cut(s)	918
PsiI	TTATAA	1 cut(s)	965
Psp5II	RGGWCCY	2 cut(s)	228, 682
Psp6I	CCWGG	2 cut(s)	639, 664
PspGI	CCWGG	2 cut(s)	639, 664
PspN4I	GGNNCC	5 cut(s)	230, 638, 683, 684, 885
PspPI	GGNCC	4 cut(s)	228, 668, 682, 884
PspPPI	RGGWCCY	2 cut(s)	228, 682
PsuI	RGATCY	2 cut(s)	387, 781
PvuII	CAGCTG	1 cut(s)	868
RsaI	GTAC	3 cut(s)	452, 500, 854
RsaNI	GTAC	3 cut(s)	451, 499, 853
RseI	CAYNNNNRTG	2 cut(s)	261, 713
SaqAI	TTAA	1 cut(s)	985
SatI	GCNGC	2 cut(s)	572, 869
Sau3AI	GATC	4 cut(s)	187, 387, 628, 781
Sau96I	GGNCC	4 cut(s)	228, 668, 682, 884
SchI	GAGTC	1 cut(s)	350
ScrFI	CCNGG	3 cut(s)	503, 641, 666
SduI	GDGCHC	3 cut(s)	305, 625, 762
SfaNI	GCATC	1 cut(s)	189
SinI	GGWCC	3 cut(s)	228, 682, 884
SmiMI	CAYNNNNRTG	2 cut(s)	261, 713
Sse9I	AATT	8 cut(s)	14, 65, 78, 179, 271, 743, 819, 955
SsiI	CCGC	1 cut(s)	491
SspMI	CTAG	3 cut(s)	222, 245, 369
StyD4I	CCNGG	3 cut(s)	501, 639, 664
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	4 cut(s)	118, 175, 345, 523
TasI	AATT	8 cut(s)	14, 65, 78, 179, 271, 743, 819, 955
TatI	WGTACW	2 cut(s)	450, 852
TfiI	GAWTC	4 cut(s)	94, 601, 646, 938
Tru1I	TTAA	1 cut(s)	985
Tru9I	TTAA	1 cut(s)	985
TscAI	CASTG	2 cut(s)	660, 819
TseFI	GTSAC	2 cut(s)	715, 827
TseI	GCWGC	2 cut(s)	571, 868
Tsp45I	GTSAC	2 cut(s)	715, 827
TspDTI	ATGAA	5 cut(s)	245, 277, 697, 852, 960
TspGWI	ACGGA	2 cut(s)	480, 566
TspRI	CASTG	2 cut(s)	660, 819
Van91I	CCANNNNNTGG	1 cut(s)	298
VpaK11BI	GGWCC	3 cut(s)	228, 682, 884
XapI	RAATTY	2 cut(s)	14, 955
XmaJI	CCTAGG	1 cut(s)	221
XspI	CTAG	3 cut(s)	222, 245, 369
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.