Rh2AG447200

Alpha/beta hydrolase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001654
Physical Location & Seq
Reverse (-)
66012135 .. 66015057
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG447200.1

Sequence Viewer

Length: 822 bp
ATGGCGTACACGAAGTTCTATCATGTCCTCTCCTTCTACCTCGCAACCCTAATAGCCATATACGAATTCCTTCTTTCAGTCTTGCCTTATATTTTGAATCCTGCTTCCATCCTAATCGCTTTTGCAGATGCATTTTTAGGAGTATACTTCAGATTGTGTGGTCTTTCTTCTTGTACTATTGAATTAGATGAACAAACCACCATGCATTTTTGGGCTTCCAATCCTAGAAGATCTGACAAGCCTGATCTACTGATGCTTCACGGGTATGGTGGCAATTCCAAGTGGCAATTCATGCACCAAGTCGGCTCACTCTCCCGGACTTTTAATTTGTACGTGCCCGATTTACTCTTCTTTGGCAAGTCATACACAAAAATGTCCGACAGGACGGAGGTGTTCCAAGCAAAATGTGTAGCGGAAGGGTTGAGGAGACTAGGCGTTGACAGGTTTGGTGTGTACTCTATAAGCTATGGAGGGTTTGTGGCATATTGGCTGGCGGAGATGTATCCGCAGGCGGTGGAGAGGCTTGTGATTGTGAGCTGTGGGATAGGGATGACAGAGGAGCAGAAAAAGGATCAGCTCAACAAGATTGGACGCAATGCATTGAAGCTCCTTGTACCTGAAAGTGCTCATGATCTAAGGGGCTTGGTGAATCTTTCGGTGCACAAACCCAGTCCTGTTAGGTGGCTACCCGATGTTTTCATCCGCGGGTTTATTCATGTGACTTATGAGAGAAACAGGAAGCAGAAACTAGAGATGGCAGAGCACTTGCTAAGGGAAAAAGCAGACCTAAACCTTCCCATTCTGACTCAGGTAATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6

Protein Analysis

273

Amino Acids

31.25

Weight (kDa)

8.93

Isoelectric Point (pI)

46.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 83 - 180 7.7e-13 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 705
AciI CCGC 6 cut(s) 413, 494, 506, 512, 703, 705
AclWI GGATC 1 cut(s) 579
AcsI RAATTY 1 cut(s) 65
AcuI CTGAAG 1 cut(s) 133
AfaI GTAC 5 cut(s) 8, 175, 332, 455, 615
AgsI TTSAA 3 cut(s) 97, 182, 604
AjuI GAANNNNNNNTTGG 2 cut(s) 272, 304
AluBI AGCT 4 cut(s) 465, 537, 577, 607
AluI AGCT 4 cut(s) 465, 537, 577, 607
Alw21I GWGCWC 3 cut(s) 628, 663, 765
Alw26I GTCTC 1 cut(s) 421
Alw44I GTGCAC 1 cut(s) 659
AlwI GGATC 1 cut(s) 579
ApaLI GTGCAC 1 cut(s) 659
ApoI RAATTY 1 cut(s) 65
ArsI GACNNNNNNTTYG 2 cut(s) 310, 342
Asp700I GAANNNNTTC 1 cut(s) 69
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 658
BaeGI GKGCMC 2 cut(s) 339, 663
Bbv12I GWGCWC 3 cut(s) 628, 663, 765
BccI CCATC 2 cut(s) 116, 748
BciVI GTATCC 1 cut(s) 513
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 1 cut(s) 421
BfaI CTAG 3 cut(s) 225, 431, 749
BfuI GTATCC 1 cut(s) 513
BglII AGATCT 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 316
BmrFI CCNGG 1 cut(s) 316
BmrI ACTGGG 1 cut(s) 663
BmsI GCATC 2 cut(s) 118, 243
BmuI ACTGGG 1 cut(s) 663
Bpu10I CCTNAGC 1 cut(s) 770
BpuMI CCSGG 1 cut(s) 316
BsaAI YACGTR 1 cut(s) 334
BsaJI CCNNGG 1 cut(s) 703
BsaXI ACNNNNNCTCC 2 cut(s) 462, 492
Bse1I ACTGG 1 cut(s) 669
Bse3DI GCAATG 1 cut(s) 601
BseDI CCNNGG 1 cut(s) 703
BseGI GGATG 3 cut(s) 108, 555, 699
BseMI GCAATG 1 cut(s) 601
BseMII CTCAG 1 cut(s) 821
BseNI ACTGG 1 cut(s) 669
BseRI GAGGAG 2 cut(s) 439, 572
BseSI GKGCMC 2 cut(s) 339, 663
Bsh1236I CGCG 1 cut(s) 705
BsiHKAI GWGCWC 3 cut(s) 628, 663, 765
BsiSI CCGG 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 421
Bsp1286I GDGCHC 4 cut(s) 339, 628, 663, 765
Bsp143I GATC 4 cut(s) 230, 244, 571, 631
BspACI CCGC 6 cut(s) 413, 494, 506, 512, 703, 705
BspCNI CTCAG 1 cut(s) 820
BspFNI CGCG 1 cut(s) 705
BspHI TCATGA 1 cut(s) 628
BspPI GGATC 1 cut(s) 579
BsrDI GCAATG 1 cut(s) 601
BsrI ACTGG 1 cut(s) 669
BssECI CCNNGG 1 cut(s) 703
BssMI GATC 4 cut(s) 230, 244, 571, 631
BssNAI GTATAC 1 cut(s) 145
Bst1107I GTATAC 1 cut(s) 145
Bst6I CTCTTC 1 cut(s) 353
BstAPI GCANNNNNTGC 1 cut(s) 292
BstBAI YACGTR 1 cut(s) 334
BstC8I GCNNGC 2 cut(s) 492, 510
BstDEI CTNAG 3 cut(s) 635, 770, 807
BstDSI CCRYGG 1 cut(s) 703
BstF5I GGATG 3 cut(s) 108, 555, 699
BstFNI CGCG 1 cut(s) 705
BstKTI GATC 4 cut(s) 233, 247, 574, 634
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 4 cut(s) 230, 244, 571, 631
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 314
BstSLI GKGCMC 2 cut(s) 339, 663
BstUI CGCG 1 cut(s) 705
BstX2I RGATCY 1 cut(s) 230
BstYI RGATCY 1 cut(s) 230
BstZ17I GTATAC 1 cut(s) 145
BsuI GTATCC 1 cut(s) 513
BtgI CCRYGG 1 cut(s) 703
BtsCI GGATG 3 cut(s) 108, 555, 699
Cac8I GCNNGC 2 cut(s) 492, 510
CciI TCATGA 1 cut(s) 628
Cfr42I CCGCGG 1 cut(s) 706
CseI GACGC 1 cut(s) 600
Csp6I GTAC 5 cut(s) 7, 174, 331, 454, 614
CviAII CATG 5 cut(s) 23, 202, 292, 629, 716
CviQI GTAC 5 cut(s) 7, 174, 331, 454, 614
DdeI CTNAG 3 cut(s) 635, 770, 807
DpnI GATC 4 cut(s) 232, 246, 573, 633
DpnII GATC 4 cut(s) 230, 244, 571, 631
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
EciI GGCGGA 1 cut(s) 509
Eco57I CTGAAG 1 cut(s) 133
EcoRI GAATTC 1 cut(s) 65
EcoT22I ATGCAT 3 cut(s) 133, 207, 601
FaeI CATG 5 cut(s) 26, 205, 295, 632, 719
FatI CATG 5 cut(s) 22, 201, 291, 628, 715
FauI CCCGC 1 cut(s) 698
FblI GTMKAC 1 cut(s) 144
FokI GGATG 3 cut(s) 95, 562, 686
FspBI CTAG 3 cut(s) 225, 431, 749
HapII CCGG 1 cut(s) 316
HgaI GACGC 1 cut(s) 600
Hin1II CATG 5 cut(s) 26, 205, 295, 632, 719
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HinfI GANTC 3 cut(s) 97, 649, 805
HpaII CCGG 1 cut(s) 316
HphI GGTGA 1 cut(s) 658
Hpy166II GTNNAC 5 cut(s) 9, 145, 439, 454, 661
Hpy188I TCNGA 4 cut(s) 152, 235, 379, 804
Hpy188III TCNNGA 1 cut(s) 629
Hpy8I GTNNAC 5 cut(s) 9, 145, 439, 454, 661
HpyAV CCTTC 4 cut(s) 43, 80, 410, 803
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 6 cut(s) 125, 131, 205, 295, 599, 661
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpyF3I CTNAG 3 cut(s) 635, 770, 807
HpySE526I ACGT 1 cut(s) 333
Hsp92II CATG 5 cut(s) 26, 205, 295, 632, 719
KspI CCGCGG 1 cut(s) 706
Kzo9I GATC 4 cut(s) 230, 244, 571, 631
LmnI GCTCC 2 cut(s) 559, 612
LweI GCATC 2 cut(s) 118, 243
MaeI CTAG 3 cut(s) 225, 431, 749
MaeII ACGT 1 cut(s) 333
MaeIII GTNAC 1 cut(s) 718
MalI GATC 4 cut(s) 232, 246, 573, 633
MboI GATC 4 cut(s) 230, 244, 571, 631
MboII GAAGA 3 cut(s) 159, 240, 340
MflI RGATCY 1 cut(s) 230
MhlI GDGCHC 4 cut(s) 339, 628, 663, 765
MluCI AATT 6 cut(s) 65, 182, 274, 287, 325, 813
MlyI GAGTC 1 cut(s) 799
MmeI TCCRAC 1 cut(s) 402
MnlI CCTC 7 cut(s) 38, 50, 382, 417, 464, 513, 550
Mph1103I ATGCAT 3 cut(s) 133, 207, 601
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 2 cut(s) 324, 820
MslI CAYNNNNRTG 2 cut(s) 264, 371
MspA1I CMGCKG 1 cut(s) 705
MspI CCGG 1 cut(s) 316
MspR9I CCNGG 1 cut(s) 316
MvnI CGCG 1 cut(s) 705
MwoI GCNNNNNNNGC 1 cut(s) 292
NciI CCSGG 1 cut(s) 316
NdeII GATC 4 cut(s) 230, 244, 571, 631
NlaIII CATG 5 cut(s) 26, 205, 295, 632, 719
NmuCI GTSAC 1 cut(s) 718
NsiI ATGCAT 3 cut(s) 133, 207, 601
PagI TCATGA 1 cut(s) 628
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 2 cut(s) 97, 649
PfoI TCCNGGA 1 cut(s) 314
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Ppu21I YACGTR 1 cut(s) 334
PsrI GAACNNNNNNTAC 1 cut(s) 31
PsuI RGATCY 1 cut(s) 230
RsaI GTAC 5 cut(s) 8, 175, 332, 455, 615
RsaNI GTAC 5 cut(s) 7, 174, 331, 454, 614
RseI CAYNNNNRTG 2 cut(s) 264, 371
SacII CCGCGG 1 cut(s) 706
SaqAI TTAA 2 cut(s) 324, 820
Sau3AI GATC 4 cut(s) 230, 244, 571, 631
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 1 cut(s) 316
SduI GDGCHC 4 cut(s) 339, 628, 663, 765
SfaNI GCATC 2 cut(s) 118, 243
Sfr303I CCGCGG 1 cut(s) 706
SgrBI CCGCGG 1 cut(s) 706
SmiMI CAYNNNNRTG 2 cut(s) 264, 371
Sse9I AATT 6 cut(s) 65, 182, 274, 287, 325, 813
SsiI CCGC 6 cut(s) 413, 494, 506, 512, 703, 705
SspMI CTAG 3 cut(s) 225, 431, 749
StyD4I CCNGG 1 cut(s) 314
TaiI ACGT 1 cut(s) 336
TasI AATT 6 cut(s) 65, 182, 274, 287, 325, 813
TatI WGTACW 2 cut(s) 173, 453
TfiI GAWTC 2 cut(s) 97, 649
Tru1I TTAA 2 cut(s) 324, 820
Tru9I TTAA 2 cut(s) 324, 820
TseFI GTSAC 1 cut(s) 718
Tsp45I GTSAC 1 cut(s) 718
TspDTI ATGAA 4 cut(s) 204, 280, 688, 704
TspGWI ACGGA 1 cut(s) 401
VneI GTGCAC 1 cut(s) 659
XapI RAATTY 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 69
XspI CTAG 3 cut(s) 225, 431, 749
Zsp2I ATGCAT 3 cut(s) 133, 207, 601
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.