Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Reverse (-)

67835853 .. 67837873

Gene Structure 2021 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG468300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTTACCAAAAGATTTGGATTGTCATCTCCCTCTACCTCTCAGCCATATCAACCATTTTTCACCACCTCAAATCCTTTTTCTTCAAAACAAACTGGGATTCCATCTTTTTCAGAATCCCAGATACCCTCGTATCCCTATACTTCAGACTATGCGGTCTATCTCCTTGCACCGTTGACATTGACGACCAAACCACAGTCCACTTCTGGACCGCCAACCACCGCCGGTTCGATAAACCAAGCCTGGTTCTGGTTCACGGCTACGGCGGCAACTCCCTGTGGCAGTTCGTCTGTCAAGTGGGTCCCTTGTCCAAGAAGTTCAACGTGTTCGTGCCGGATTTGCTGTTCTTCGGGAAGTCTTACACGAACCGGTCAGACCGGAGCGAGTCTTTTCAAGCCAAGTGCGTTATGGAGGGGCTGAAGAGGCTGGGCGTGGACCGGTACTCCGTGTACGGTATTAGCTACGGCGGCTTCGTGGCGTACGGCATGGCAGAGATGTGTCCAGAGACGGTGGAGAAGGTTGTGATCGTGAGTAGTGGGGTAGTGTGGAATGATCAGCAGAAGGAGGAGTTGTTGAGGAAGAATTCAAACGCTTTGGAGATTCTTGTAGCGAATAATCCACATGATCTACGGTTGTTAGTGAGTCGATCGATTTACAAGTATGATGTTTTCAAGTGGGTTCCTGACTATGTCCTTCAAAAGCTCATTGAGGTAAGTTCTTCTGTTTCCGTACTATTGTTTTTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

249

Amino Acids

28.66

Weight (kDa)

8.5

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 188	7.9e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 183	1.4e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	156
AciI	CCGC	5 cut(s)	156, 213, 223, 267, 468
AcsI	RAATTY	1 cut(s)	583
AcuI	CTGAAG	2 cut(s)	130, 440
AfaI	GTAC	4 cut(s)	443, 452, 482, 732
AfiI	CCNNNNNNNGG	1 cut(s)	250
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	2 cut(s)	369, 438
AgsI	TTSAA	6 cut(s)	88, 322, 395, 588, 673, 698
AjnI	CCWGG	1 cut(s)	243
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	2 cut(s)	462, 703
AluI	AGCT	2 cut(s)	462, 703
Alw26I	GTCTC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	583
AsiGI	ACCGGT	2 cut(s)	369, 438
AspS9I	GGNCC	3 cut(s)	210, 302, 436
AsuHPI	GGTGA	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	210, 302, 436
BaeI	ACNNNNGTAYC	4 cut(s)	117, 117, 150, 150
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	4 cut(s)	274, 280, 481, 499
BciT130I	CCWGG	1 cut(s)	245
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	1 cut(s)	500
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	2 cut(s)	268, 469
BlsI	GCNGC	2 cut(s)	269, 470
Bme1390I	CCNGG	1 cut(s)	245
Bme18I	GGWCC	3 cut(s)	210, 302, 436
BmgT120I	GGNCC	3 cut(s)	210, 302, 436
BmiI	GGNNCC	3 cut(s)	303, 304, 681
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
Bsa29I	ATCGAT	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	26
BsaWI	WCCGGW	3 cut(s)	369, 378, 438
BsaXI	ACNNNNNCTCC	4 cut(s)	428, 458, 557, 587
Bsc4I	CCNNNNNNNGG	1 cut(s)	250
Bse118I	RCCGGY	3 cut(s)	225, 369, 438
Bse1I	ACTGG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	650
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	1 cut(s)	250
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	581
BseYI	CCCAGC	1 cut(s)	427
Bsh1285I	CGRYCG	1 cut(s)	650
BshTI	ACCGGT	2 cut(s)	369, 438
BshVI	ATCGAT	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	650
BsiSI	CCGG	5 cut(s)	226, 335, 370, 379, 439
BsiWI	CGTACG	1 cut(s)	480
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	250
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	288
Bsp143I	GATC	4 cut(s)	525, 553, 625, 647
BspACI	CCGC	5 cut(s)	156, 213, 223, 267, 468
BspCNI	CTCAG	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	650
BspLI	GGNNCC	3 cut(s)	303, 304, 681
BsrFI	RCCGGY	3 cut(s)	225, 369, 438
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	3 cut(s)	225, 369, 438
BssMI	GATC	4 cut(s)	525, 553, 625, 647
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	5 cut(s)	175, 199, 455, 511, 633
Bst6I	CTCTTC	1 cut(s)	416
BstDEI	CTNAG	1 cut(s)	43
BstKTI	GATC	4 cut(s)	528, 556, 628, 650
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	4 cut(s)	525, 553, 625, 647
BstMCI	CGRYCG	1 cut(s)	650
BstMWI	GCNNNNNNNGC	4 cut(s)	267, 340, 424, 468
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
Bsu15I	ATCGAT	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	145
BsuTUI	ATCGAT	1 cut(s)	650
Cfr10I	RCCGGY	3 cut(s)	225, 369, 438
Cfr13I	GGNCC	3 cut(s)	210, 302, 436
ClaI	ATCGAT	1 cut(s)	650
Csp6I	GTAC	4 cut(s)	442, 451, 481, 731
CspAI	ACCGGT	2 cut(s)	369, 438
CviAII	CATG	2 cut(s)	487, 623
CviQI	GTAC	4 cut(s)	442, 451, 481, 731
DdeI	CTNAG	1 cut(s)	43
DpnI	GATC	4 cut(s)	527, 555, 627, 649
DpnII	GATC	4 cut(s)	525, 553, 625, 647
DrdI	GACNNNNNNGTC	1 cut(s)	156
DseDI	GACNNNNNNGTC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco47I	GGWCC	3 cut(s)	210, 302, 436
Eco57I	CTGAAG	2 cut(s)	130, 440
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	2 cut(s)	490, 626
FaiI	YATR	8 cut(s)	50, 142, 154, 410, 488, 624, 663, 690
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	2 cut(s)	486, 622
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	2 cut(s)	268, 469
Fsp4HI	GCNGC	2 cut(s)	268, 469
GluI	GCNGC	2 cut(s)	268, 469
GsaI	CCCAGC	1 cut(s)	431
HapII	CCGG	5 cut(s)	226, 335, 370, 379, 439
Hin1II	CATG	2 cut(s)	490, 626
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	5 cut(s)	101, 117, 386, 601, 643
HpaII	CCGG	5 cut(s)	226, 335, 370, 379, 439
HphI	GGTGA	1 cut(s)	56
Hpy166II	GTNNAC	5 cut(s)	178, 202, 256, 436, 451
Hpy188I	TCNGA	3 cut(s)	116, 149, 376
Hpy188III	TCNNGA	5 cut(s)	208, 352, 503, 529, 683
Hpy8I	GTNNAC	5 cut(s)	178, 202, 256, 436, 451
HpyAV	CCTTC	3 cut(s)	511, 556, 704
HpyCH4III	ACNGT	5 cut(s)	175, 199, 455, 511, 633
HpyCH4IV	ACGT	1 cut(s)	324
HpyCH4V	TGCA	1 cut(s)	171
HpyF10VI	GCNNNNNNNGC	4 cut(s)	267, 340, 424, 468
HpyF3I	CTNAG	1 cut(s)	43
HpySE526I	ACGT	1 cut(s)	324
Hsp92II	CATG	2 cut(s)	490, 626
KflI	GGGWCCC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	4 cut(s)	525, 553, 625, 647
LmnI	GCTCC	1 cut(s)	381
MaeII	ACGT	1 cut(s)	324
MalI	GATC	4 cut(s)	527, 555, 627, 649
MboI	GATC	4 cut(s)	525, 553, 625, 647
MboII	GAAGA	5 cut(s)	76, 340, 433, 592, 711
MluCI	AATT	1 cut(s)	583
MlyI	GAGTC	2 cut(s)	395, 652
MnlI	CCTC	9 cut(s)	44, 50, 80, 140, 406, 417, 559, 570, 703
MseI	TTAA	1 cut(s)	748
MspI	CCGG	5 cut(s)	226, 335, 370, 379, 439
MspR9I	CCNGG	1 cut(s)	245
MvaI	CCWGG	1 cut(s)	245
MwoI	GCNNNNNNNGC	4 cut(s)	267, 340, 424, 468
NdeII	GATC	4 cut(s)	525, 553, 625, 647
NlaIII	CATG	2 cut(s)	490, 626
NlaIV	GGNNCC	3 cut(s)	303, 304, 681
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	3 cut(s)	101, 117, 601
Pfl23II	CGTACG	1 cut(s)	480
PflFI	GACNNNGTC	1 cut(s)	689
PinAI	ACCGGT	2 cut(s)	369, 438
PkrI	GCNGC	2 cut(s)	269, 470
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	2 cut(s)	394, 651
PpsI	GAGTC	2 cut(s)	394, 651
PpuMI	RGGWCCY	1 cut(s)	302
Psp5II	RGGWCCY	1 cut(s)	302
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	243
PspLI	CGTACG	1 cut(s)	480
PspN4I	GGNNCC	3 cut(s)	303, 304, 681
PspPI	GGNCC	3 cut(s)	210, 302, 436
PspPPI	RGGWCCY	1 cut(s)	302
PsyI	GACNNNGTC	1 cut(s)	689
PvuI	CGATCG	1 cut(s)	650
RsaI	GTAC	4 cut(s)	443, 452, 482, 732
RsaNI	GTAC	4 cut(s)	442, 451, 481, 731
SaqAI	TTAA	1 cut(s)	748
SatI	GCNGC	2 cut(s)	268, 469
Sau3AI	GATC	4 cut(s)	525, 553, 625, 647
Sau96I	GGNCC	3 cut(s)	210, 302, 436
SchI	GAGTC	2 cut(s)	395, 652
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	7 cut(s)	42, 72, 327, 464, 522, 705, 714
SinI	GGWCC	3 cut(s)	210, 302, 436
Sse9I	AATT	1 cut(s)	583
SsiI	CCGC	5 cut(s)	156, 213, 223, 267, 468
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	5 cut(s)	175, 199, 455, 511, 633
TaiI	ACGT	1 cut(s)	327
TaqI	TCGA	3 cut(s)	231, 646, 650
TasI	AATT	1 cut(s)	583
TauI	GCSGC	2 cut(s)	270, 471
TfiI	GAWTC	3 cut(s)	101, 117, 601
Tru1I	TTAA	1 cut(s)	748
Tru9I	TTAA	1 cut(s)	748
TspGWI	ACGGA	2 cut(s)	436, 718
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	3 cut(s)	210, 302, 436
XapI	RAATTY	1 cut(s)	583
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.