Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Forward (+)

22408556 .. 22409811

Gene Structure 1256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGGAGAGGAGGAGAAGGGCCGTGAGACGGCTGCGGGTTGGTGCGCAAGGCACAGTCAATGGCGGCTTGAAAAGCTTGGAGGCGCGGCTAAGGAGCATGCTTAGGGTTTTTGCTAGCATGAATACACTTGTATCCTTGTACTACAGACTATGCGATCTATCTCCTTGCACCGTTGACATCGACGACCAAACCACAGTCCACTTCTGGACCGCCAACCACCGCCGGTTCGACAAACCCAGTCTGATTCTGGTTCACGGCTATGGCGGCAACTCCCTGTGGCAGTTCGTCCGTCAAGTGCATCCCCTGTCCAGGAAGTTCAACGTGTACGTGCCGGATTTGCTGTTCTTCGGGAAGTCTTACACGAACCGGTCGGACCGGAGCGAGTCTTTTCAAGCCAAGTGCGTTATGGAGGGGCTGAAGAGGCTGGGCGTGGACCGGTACTCGGTGTACGGTATTAGCTACGGCGGCTTCGTGGCGTACCGCATGGCAGAGATGTGTCCGGAGACAGTGGAGAAGGTTGTGATCGTGAGTAGTGGGGTGGTGTGGAGTGATCAGCAGAAGGAGGAGTTGTTGAGGAAGAACTCAAACGCTATGGAGATTCTTGTAGCGAATAATCCACATGATCTACGGTTGTTAGTGAGTCGATCGATTTACAAGTATGATGTTTTCAAGTGGGTTCCTGACTATGTCCTTCAAAAGCTCATTGAGGTGATCGAGTTCTTCTCTTTCCGTACTATTGTTTTTGGATTAGGTGAACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

254

Amino Acids

29.45

Weight (kDa)

9.64

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 187	1.1e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 184	2.9e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	48
AccII	CGCG	1 cut(s)	88
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	8 cut(s)	37, 66, 88, 213, 223, 267, 468, 484
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	6 cut(s)	143, 329, 443, 452, 482, 736
AfiI	CCNNNNNNNGG	3 cut(s)	30, 312, 445
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	2 cut(s)	369, 438
AgsI	TTSAA	5 cut(s)	73, 322, 395, 673, 698
AjnI	CCWGG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	3 cut(s)	78, 462, 703
AluI	AGCT	3 cut(s)	78, 462, 703
Alw26I	GTCTC	2 cut(s)	22, 500
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	34
AsiGI	ACCGGT	2 cut(s)	369, 438
AspLEI	GCGC	2 cut(s)	49, 88
AspS9I	GGNCC	4 cut(s)	21, 210, 376, 436
AsuHPI	GGTGA	1 cut(s)	724
AsuNHI	GCTAGC	1 cut(s)	116
AvaII	GGWCC	3 cut(s)	210, 376, 436
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BbvI	GCAGC	1 cut(s)	21
BceAI	ACGGC	4 cut(s)	8, 47, 274, 481
BciT130I	CCWGG	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	553
BcoDI	GTCTC	2 cut(s)	22, 500
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	5 cut(s)	35, 67, 89, 268, 469
BlsI	GCNGC	5 cut(s)	36, 68, 90, 269, 470
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	3 cut(s)	210, 376, 436
BmgT120I	GGNCC	4 cut(s)	21, 210, 376, 436
BmiI	GGNNCC	1 cut(s)	681
BmrFI	CCNGG	1 cut(s)	313
BmrI	ACTGGG	1 cut(s)	234
BmsI	GCATC	1 cut(s)	310
BmtI	GCTAGC	1 cut(s)	120
BmuI	ACTGGG	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
Bpu10I	CCTNAGC	2 cut(s)	92, 104
Bsa29I	ATCGAT	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	331
BsaWI	WCCGGW	4 cut(s)	369, 378, 438, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 312, 445
Bse118I	RCCGGY	3 cut(s)	225, 369, 438
Bse1I	ACTGG	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	313
BseCI	ATCGAT	1 cut(s)	650
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	3 cut(s)	30, 312, 445
BseNI	ACTGG	1 cut(s)	240
BseRI	GAGGAG	3 cut(s)	25, 28, 581
BseXI	GCAGC	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	88
Bsh1285I	CGRYCG	2 cut(s)	374, 650
BshFI	GGCC	1 cut(s)	23
BshTI	ACCGGT	2 cut(s)	369, 438
BshVI	ATCGAT	1 cut(s)	650
BsiEI	CGRYCG	2 cut(s)	374, 650
BsiSI	CCGG	6 cut(s)	226, 335, 370, 379, 439, 503
BslI	CCNNNNNNNGG	3 cut(s)	30, 312, 445
BsmAI	GTCTC	2 cut(s)	22, 500
BsmBI	CGTCTC	1 cut(s)	22
BsnI	GGCC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
BspACI	CCGC	8 cut(s)	37, 66, 88, 213, 223, 267, 468, 484
BspANI	GGCC	1 cut(s)	23
BspDI	ATCGAT	1 cut(s)	650
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	88
BspLI	GGNNCC	1 cut(s)	681
BspOI	GCTAGC	1 cut(s)	120
BsrFI	RCCGGY	3 cut(s)	225, 369, 438
BsrI	ACTGG	1 cut(s)	240
BssAI	RCCGGY	3 cut(s)	225, 369, 438
BssMI	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	6 cut(s)	58, 175, 199, 455, 511, 633
Bst6I	CTCTTC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	101, 118
BstDEI	CTNAG	2 cut(s)	92, 104
BstF5I	GGATG	1 cut(s)	301
BstFNI	CGCG	1 cut(s)	88
BstHHI	GCGC	2 cut(s)	49, 88
BstKTI	GATC	6 cut(s)	160, 528, 556, 628, 650, 717
BstMAI	GTCTC	2 cut(s)	22, 500
BstMBI	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
BstMCI	CGRYCG	2 cut(s)	374, 650
BstMWI	GCNNNNNNNGC	5 cut(s)	75, 267, 340, 424, 468
BstNI	CCWGG	1 cut(s)	313
BstNSI	RCATGY	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	88
BstV1I	GCAGC	1 cut(s)	21
Bsu15I	ATCGAT	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	23
BsuTUI	ATCGAT	1 cut(s)	650
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	101, 118
CfoI	GCGC	2 cut(s)	49, 88
Cfr10I	RCCGGY	3 cut(s)	225, 369, 438
Cfr13I	GGNCC	4 cut(s)	21, 210, 376, 436
ClaI	ATCGAT	1 cut(s)	650
CpoI	CGGWCCG	1 cut(s)	376
Csp6I	GTAC	6 cut(s)	142, 328, 442, 451, 481, 735
CspAI	ACCGGT	2 cut(s)	369, 438
CspI	CGGWCCG	1 cut(s)	376
CviAII	CATG	4 cut(s)	100, 121, 487, 623
CviQI	GTAC	6 cut(s)	142, 328, 442, 451, 481, 735
DdeI	CTNAG	2 cut(s)	92, 104
DpnI	GATC	6 cut(s)	159, 527, 555, 627, 649, 716
DpnII	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco47I	GGWCC	3 cut(s)	210, 376, 436
Eco57I	CTGAAG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	311
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	4 cut(s)	103, 124, 490, 626
FatI	CATG	4 cut(s)	99, 120, 486, 622
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	35, 67, 89, 268, 469
FokI	GGATG	1 cut(s)	288
Fsp4HI	GCNGC	5 cut(s)	35, 67, 89, 268, 469
FspBI	CTAG	1 cut(s)	117
FspI	TGCGCA	1 cut(s)	48
GlaI	GCGC	2 cut(s)	48, 87
GluI	GCNGC	5 cut(s)	35, 67, 89, 268, 469
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	6 cut(s)	226, 335, 370, 379, 439, 503
HhaI	GCGC	2 cut(s)	49, 88
Hin1II	CATG	4 cut(s)	103, 124, 490, 626
Hin6I	GCGC	2 cut(s)	47, 86
HinP1I	GCGC	2 cut(s)	47, 86
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	76
HinfI	GANTC	4 cut(s)	247, 386, 601, 643
HpaII	CCGG	6 cut(s)	226, 335, 370, 379, 439, 503
HphI	GGTGA	1 cut(s)	724
Hpy166II	GTNNAC	7 cut(s)	178, 202, 256, 328, 436, 451, 758
Hpy188I	TCNGA	2 cut(s)	246, 376
Hpy188III	TCNNGA	5 cut(s)	208, 352, 503, 529, 683
Hpy8I	GTNNAC	7 cut(s)	178, 202, 256, 328, 436, 451, 758
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	4 cut(s)	12, 511, 556, 704
HpyCH4III	ACNGT	6 cut(s)	58, 175, 199, 455, 511, 633
HpyCH4IV	ACGT	2 cut(s)	324, 330
HpyCH4V	TGCA	2 cut(s)	171, 301
HpyF10VI	GCNNNNNNNGC	5 cut(s)	75, 267, 340, 424, 468
HpyF3I	CTNAG	2 cut(s)	92, 104
HpySE526I	ACGT	2 cut(s)	324, 330
Hsp92II	CATG	4 cut(s)	103, 124, 490, 626
HspAI	GCGC	2 cut(s)	47, 86
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	1 cut(s)	553
Kzo9I	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
LmnI	GCTCC	2 cut(s)	96, 381
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	310
MaeI	CTAG	1 cut(s)	117
MaeII	ACGT	2 cut(s)	324, 330
MalI	GATC	6 cut(s)	159, 527, 555, 627, 649, 716
MboI	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
MboII	GAAGA	4 cut(s)	340, 433, 592, 715
MlyI	GAGTC	2 cut(s)	395, 652
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	8 cut(s)	3, 6, 76, 406, 417, 559, 570, 703
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	1 cut(s)	763
MslI	CAYNNNNRTG	2 cut(s)	261, 710
MspI	CCGG	6 cut(s)	226, 335, 370, 379, 439, 503
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
MvnI	CGCG	1 cut(s)	88
MwoI	GCNNNNNNNGC	5 cut(s)	75, 267, 340, 424, 468
NdeII	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
NheI	GCTAGC	1 cut(s)	116
NlaIII	CATG	4 cut(s)	103, 124, 490, 626
NlaIV	GGNNCC	1 cut(s)	681
NsbI	TGCGCA	1 cut(s)	48
NspI	RCATGY	1 cut(s)	103
PaeI	GCATGC	1 cut(s)	103
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	247, 601
PflFI	GACNNNGTC	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	311
PinAI	ACCGGT	2 cut(s)	369, 438
PkrI	GCNGC	5 cut(s)	36, 68, 90, 269, 470
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	2 cut(s)	394, 651
PpsI	GAGTC	2 cut(s)	394, 651
Ppu21I	YACGTR	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	4 cut(s)	21, 210, 376, 436
PsyI	GACNNNGTC	1 cut(s)	689
PvuI	CGATCG	1 cut(s)	650
RsaI	GTAC	6 cut(s)	143, 329, 443, 452, 482, 736
RsaNI	GTAC	6 cut(s)	142, 328, 442, 451, 481, 735
RseI	CAYNNNNRTG	2 cut(s)	261, 710
Rsr2I	CGGWCCG	1 cut(s)	376
RsrII	CGGWCCG	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	763
SatI	GCNGC	5 cut(s)	35, 67, 89, 268, 469
Sau3AI	GATC	6 cut(s)	157, 525, 553, 625, 647, 714
Sau96I	GGNCC	4 cut(s)	21, 210, 376, 436
SchI	GAGTC	2 cut(s)	395, 652
ScrFI	CCNGG	1 cut(s)	313
SetI	ASST	8 cut(s)	80, 327, 333, 464, 522, 705, 714, 757
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	3 cut(s)	210, 376, 436
SmiMI	CAYNNNNRTG	2 cut(s)	261, 710
SphI	GCATGC	1 cut(s)	103
SsiI	CCGC	8 cut(s)	37, 66, 88, 213, 223, 267, 468, 484
SspMI	CTAG	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	6 cut(s)	58, 175, 199, 455, 511, 633
TaiI	ACGT	2 cut(s)	327, 333
TaqI	TCGA	5 cut(s)	183, 231, 646, 650, 717
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	4 cut(s)	69, 91, 270, 471
TfiI	GAWTC	2 cut(s)	247, 601
Tru1I	TTAA	1 cut(s)	763
Tru9I	TTAA	1 cut(s)	763
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	17, 137
TspGWI	ACGGA	2 cut(s)	281, 722
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	3 cut(s)	210, 376, 436
XceI	RCATGY	1 cut(s)	103
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 406
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.