Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Reverse (-)

146544 .. 148788

Gene Structure 2245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTACCAAAAGCTTTGGATTGTCATCTCCTTCTACCTCTCAGCCATATCAACCATTTTTTACCACCTCAAATCCTTTTTGTTCAAAACAAACTGGGATTCAATCTTTTTCAAAATCCCAGATACACTTGTATCCTTGTACTACAGACTATGCGATCTATCTCCTTGCACCGTTGACATCGACGACCAAACCACAGTCCACTTCTGGACCGCCAACCACCGCCGGTTCGACAAACCCAGTCTGATTCTGGTTCACGGCTATGGCGGCAACTCCCTGTGGCAGTTCGTCCGTCAAGTGCATCCCCTGTCCAGGAAGTTCAACGTGTACGTGCCGGATTTGCTGTTCTTCGGGAAGTCTTACACGAACCGGTCGGACCGGAGCGAGTCTTTTCAAGCCAAGTGCGTTATGGAGGGGCTGAAGAGGCTGGGCGTGGACCGGTACTCGGTGTACGGTATTAGCTACGGCGGCTTCGTGGCGTACCGCATGGCAGAGATGTGTCCGGAGACAGTGGAGAAGGTTGTGATCGTGAGTAGTGGGGTGGTGTGGAGTGATCAGCAGAAGGAGGAGTTGTTGAGGAAGAACTCAAACGCTATGGAGATTCTTGTAGCGAATAATCCACATGATCTACGGTTGTTAGTGAGTCGATCGATTTACAAGTATGATGTTTTCAAGTGGGTTCCTGACTATGTCCTTCAAAAGCTCATTGAGGCGAACAAGGAAAATAGAAAGGAAAAATTAGAGCTATTGGAACACTTGGTGGCAAAGAAAGCAGATCCAAGCCTTGCTATCCTAAGTCAGGAAACGCTAATAATTTGGGGTGATCAAGATAATGTCTTCCCACTTTACATGGCCTACCAGTTGCAAAGGCACTTGGGCCCCAAATCAAAATTAGAGATTATCAAGGACACAGGACACGCAGCAAATTTTGATTCGCCGGACACAATCAATGGATTGATAAAGTCATTTGTTTTAGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

327

Amino Acids

37.85

Weight (kDa)

8.66

Isoelectric Point (pI)

32.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 313	1.3e-23	alpha/beta hydrolase fold
Hydrolase_4	PF12146	81 - 310	9.8e-06	Serine aminopeptidase, S33
Abhydrolase_6	PF12697	82 - 316	1.2e-13	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	5 cut(s)	213, 223, 267, 468, 484
AclWI	GGATC	1 cut(s)	770
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	440
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	5 cut(s)	143, 329, 443, 452, 482
AfiI	CCNNNNNNNGG	3 cut(s)	312, 445, 799
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	2 cut(s)	369, 438
AgsI	TTSAA	7 cut(s)	88, 105, 115, 322, 395, 673, 698
AjnI	CCWGG	1 cut(s)	311
AloI	GAACNNNNNNTCC	2 cut(s)	329, 361
AluBI	AGCT	4 cut(s)	16, 462, 703, 745
AluI	AGCT	4 cut(s)	16, 462, 703, 745
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	770
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	852, 877
ApaI	GGGCCC	1 cut(s)	881
ApeKI	GCWGC	1 cut(s)	920
ApoI	RAATTY	1 cut(s)	925
AsiGI	ACCGGT	2 cut(s)	369, 438
AspS9I	GGNCC	5 cut(s)	210, 376, 436, 877, 878
AsuHPI	GGTGA	1 cut(s)	833
AvaII	GGWCC	3 cut(s)	210, 376, 436
BaeGI	GKGCMC	1 cut(s)	881
BaeI	ACNNNNGTAYC	4 cut(s)	117, 117, 150, 150
BanII	GRGCYC	1 cut(s)	881
BbsI	GAAGAC	1 cut(s)	829
BbvI	GCAGC	1 cut(s)	932
BceAI	ACGGC	2 cut(s)	274, 481
BciT130I	CCWGG	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	553, 823
BcoDI	GTCTC	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	268, 469, 921
BlsI	GCNGC	3 cut(s)	269, 470, 922
Bme1390I	CCNGG	1 cut(s)	313
Bme18I	GGWCC	3 cut(s)	210, 376, 436
BmgT120I	GGNCC	5 cut(s)	210, 376, 436, 877, 878
BmiI	GGNNCC	3 cut(s)	681, 879, 880
BmrFI	CCNGG	1 cut(s)	313
BmrI	ACTGGG	2 cut(s)	106, 234
BmsI	GCATC	1 cut(s)	310
BmuI	ACTGGG	2 cut(s)	106, 234
BpiI	GAAGAC	1 cut(s)	829
Bsa29I	ATCGAT	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	26
BsaWI	WCCGGW	4 cut(s)	369, 378, 438, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	3 cut(s)	312, 445, 799
Bse118I	RCCGGY	3 cut(s)	225, 369, 438
Bse1I	ACTGG	3 cut(s)	101, 240, 859
Bse8I	GATNNNNATC	1 cut(s)	26
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	313
BseCI	ATCGAT	1 cut(s)	650
BseGI	GGATG	1 cut(s)	301
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	3 cut(s)	312, 445, 799
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	3 cut(s)	101, 240, 859
BseRI	GAGGAG	1 cut(s)	581
BseSI	GKGCMC	1 cut(s)	881
BseXI	GCAGC	1 cut(s)	932
BseYI	CCCAGC	1 cut(s)	427
Bsh1285I	CGRYCG	2 cut(s)	374, 650
BshFI	GGCC	2 cut(s)	854, 879
BshTI	ACCGGT	2 cut(s)	369, 438
BshVI	ATCGAT	1 cut(s)	650
BsiEI	CGRYCG	2 cut(s)	374, 650
BsiSI	CCGG	7 cut(s)	226, 335, 370, 379, 439, 503, 938
BslI	CCNNNNNNNGG	3 cut(s)	312, 445, 799
BsmAI	GTCTC	1 cut(s)	500
BsnI	GGCC	2 cut(s)	854, 879
Bsp120I	GGGCCC	1 cut(s)	877
Bsp1286I	GDGCHC	1 cut(s)	881
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
BspACI	CCGC	5 cut(s)	213, 223, 267, 468, 484
BspANI	GGCC	2 cut(s)	854, 879
BspCNI	CTCAG	1 cut(s)	56
BspDI	ATCGAT	1 cut(s)	650
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	681, 879, 880
BspPI	GGATC	1 cut(s)	770
BsrFI	RCCGGY	3 cut(s)	225, 369, 438
BsrI	ACTGG	3 cut(s)	101, 240, 859
BssAI	RCCGGY	3 cut(s)	225, 369, 438
BssMI	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	5 cut(s)	175, 199, 455, 511, 633
Bst6I	CTCTTC	1 cut(s)	416
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	43, 794
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	7 cut(s)	160, 528, 556, 628, 650, 778, 826
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
BstMCI	CGRYCG	2 cut(s)	374, 650
BstMWI	GCNNNNNNNGC	5 cut(s)	267, 340, 424, 468, 770
BstNI	CCWGG	1 cut(s)	313
BstSCI	CCNGG	1 cut(s)	311
BstSFI	CTRYAG	1 cut(s)	145
BstSLI	GKGCMC	1 cut(s)	881
BstV1I	GCAGC	1 cut(s)	932
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
Bsu15I	ATCGAT	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	2 cut(s)	854, 879
BsuTUI	ATCGAT	1 cut(s)	650
BtsCI	GGATG	1 cut(s)	301
BtsIMutI	CAGTG	1 cut(s)	516
Cfr10I	RCCGGY	3 cut(s)	225, 369, 438
Cfr13I	GGNCC	5 cut(s)	210, 376, 436, 877, 878
ClaI	ATCGAT	1 cut(s)	650
CpoI	CGGWCCG	1 cut(s)	376
Csp6I	GTAC	5 cut(s)	142, 328, 442, 451, 481
CspAI	ACCGGT	2 cut(s)	369, 438
CspI	CGGWCCG	1 cut(s)	376
CviAII	CATG	3 cut(s)	487, 623, 850
CviQI	GTAC	5 cut(s)	142, 328, 442, 451, 481
DdeI	CTNAG	2 cut(s)	43, 794
DpnI	GATC	7 cut(s)	159, 527, 555, 627, 649, 777, 825
DpnII	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
DraIII	CACNNNGTG	1 cut(s)	760
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco24I	GRGCYC	1 cut(s)	881
Eco47I	GGWCC	3 cut(s)	210, 376, 436
Eco57I	CTGAAG	1 cut(s)	440
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	311
EcoT38I	GRGCYC	1 cut(s)	881
FaeI	CATG	3 cut(s)	490, 626, 853
FatI	CATG	3 cut(s)	486, 622, 849
FbaI	TGATCA	2 cut(s)	553, 823
Fnu4HI	GCNGC	3 cut(s)	268, 469, 921
FokI	GGATG	1 cut(s)	288
FriOI	GRGCYC	1 cut(s)	881
Fsp4HI	GCNGC	3 cut(s)	268, 469, 921
GluI	GCNGC	3 cut(s)	268, 469, 921
GsaI	CCCAGC	1 cut(s)	431
HaeIII	GGCC	2 cut(s)	854, 879
HapII	CCGG	7 cut(s)	226, 335, 370, 379, 439, 503, 938
Hin1II	CATG	3 cut(s)	490, 626, 853
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	14
HinfI	GANTC	6 cut(s)	101, 247, 386, 601, 643, 932
HpaII	CCGG	7 cut(s)	226, 335, 370, 379, 439, 503, 938
HphI	GGTGA	1 cut(s)	833
Hpy166II	GTNNAC	6 cut(s)	178, 202, 256, 328, 436, 451
Hpy188I	TCNGA	2 cut(s)	246, 376
Hpy188III	TCNNGA	7 cut(s)	208, 352, 503, 529, 683, 800, 827
Hpy8I	GTNNAC	6 cut(s)	178, 202, 256, 328, 436, 451
Hpy99I	CGWCG	1 cut(s)	188
HpyAV	CCTTC	4 cut(s)	43, 511, 556, 704
HpyCH4III	ACNGT	5 cut(s)	175, 199, 455, 511, 633
HpyCH4IV	ACGT	2 cut(s)	324, 330
HpyCH4V	TGCA	3 cut(s)	171, 301, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	267, 340, 424, 468, 770
HpyF3I	CTNAG	2 cut(s)	43, 794
HpySE526I	ACGT	2 cut(s)	324, 330
Hsp92II	CATG	3 cut(s)	490, 626, 853
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	2 cut(s)	553, 823
Kzo9I	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
LmnI	GCTCC	1 cut(s)	381
Lsp1109I	GCAGC	1 cut(s)	932
LweI	GCATC	1 cut(s)	310
MaeII	ACGT	2 cut(s)	324, 330
MalI	GATC	7 cut(s)	159, 527, 555, 627, 649, 777, 825
MboI	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
MboII	GAAGA	4 cut(s)	340, 433, 592, 829
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	881
MluCI	AATT	4 cut(s)	737, 813, 890, 925
MlyI	GAGTC	2 cut(s)	395, 652
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	50, 80, 406, 417, 559, 570, 703
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	1 cut(s)	982
MslI	CAYNNNNRTG	1 cut(s)	261
MspI	CCGG	7 cut(s)	226, 335, 370, 379, 439, 503, 938
MspR9I	CCNGG	1 cut(s)	313
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	5 cut(s)	267, 340, 424, 468, 770
NdeII	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
NlaIII	CATG	3 cut(s)	490, 626, 853
NlaIV	GGNNCC	3 cut(s)	681, 879, 880
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	101, 247, 601, 932
PflFI	GACNNNGTC	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	311
PinAI	ACCGGT	2 cut(s)	369, 438
PkrI	GCNGC	3 cut(s)	269, 470, 922
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	2 cut(s)	394, 651
PpsI	GAGTC	2 cut(s)	394, 651
Ppu21I	YACGTR	1 cut(s)	331
Psp6I	CCWGG	1 cut(s)	311
PspFI	CCCAGC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	3 cut(s)	681, 879, 880
PspOMI	GGGCCC	1 cut(s)	877
PspPI	GGNCC	5 cut(s)	210, 376, 436, 877, 878
PsuI	RGATCY	1 cut(s)	775
PsyI	GACNNNGTC	1 cut(s)	689
PvuI	CGATCG	1 cut(s)	650
RsaI	GTAC	5 cut(s)	143, 329, 443, 452, 482
RsaNI	GTAC	5 cut(s)	142, 328, 442, 451, 481
RseI	CAYNNNNRTG	1 cut(s)	261
Rsr2I	CGGWCCG	1 cut(s)	376
RsrII	CGGWCCG	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	982
SatI	GCNGC	3 cut(s)	268, 469, 921
Sau3AI	GATC	7 cut(s)	157, 525, 553, 625, 647, 775, 823
Sau96I	GGNCC	5 cut(s)	210, 376, 436, 877, 878
SchI	GAGTC	2 cut(s)	395, 652
ScrFI	CCNGG	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	881
SfaNI	GCATC	1 cut(s)	310
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	3 cut(s)	210, 376, 436
SmiMI	CAYNNNNRTG	1 cut(s)	261
Sse9I	AATT	4 cut(s)	737, 813, 890, 925
SsiI	CCGC	5 cut(s)	213, 223, 267, 468, 484
StyD4I	CCNGG	1 cut(s)	311
TaaI	ACNGT	5 cut(s)	175, 199, 455, 511, 633
TaiI	ACGT	2 cut(s)	327, 333
TaqI	TCGA	4 cut(s)	183, 231, 646, 650
TasI	AATT	4 cut(s)	737, 813, 890, 925
TatI	WGTACW	1 cut(s)	141
TauI	GCSGC	2 cut(s)	270, 471
TfiI	GAWTC	4 cut(s)	101, 247, 601, 932
Tru1I	TTAA	1 cut(s)	982
Tru9I	TTAA	1 cut(s)	982
TscAI	CASTG	1 cut(s)	516
TseI	GCWGC	1 cut(s)	920
TspGWI	ACGGA	1 cut(s)	281
TspRI	CASTG	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	689
VpaK11BI	GGWCC	3 cut(s)	210, 376, 436
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	2 cut(s)	247, 406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.