Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Forward (+)

15699210 .. 15701069

Gene Structure 1860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1182500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCTTACCAAAAGTTGTGGAATGCTTTCTTCTTCTACCTCTCAACCGCATCAACAATTTTCCACACCCTCTTATCTTTTTTCCTCAAAACCAACTGGGATCTAGTGTTCTTCAAACTCCCAGATACTCTTGTAGCTTTATATTTCAGGCTATGTGGTCTCTCTCCTTGTACAATCGACGTTGACGACCAAACCACCGTGCACTTCTGGACTGCCAACCACCGGCGCTTCGATAAACCCGGTCTCGTTCTGGTTCATGGCTACGGAGGCAATTCTCTGTGGCAGTTTGTGTGTCATGTGGGTGCCTTGTCCAGGAACTTCAACTTGTACGTGCCGGATTTGCTGTTCTTTGGGAAGTCTTACACGAACCGGTTGGACCGGAGCGAGGTATTCCAAGCGAAAAGTGTTGTGGACGGGTTGAAGAGATTGGGTGTGGACCGGTTCTCGGTTTACGGTCTGAGCTACGGTGGGTTTGTGGCGTATCGGATGGCTGAGATGTATCCGGAGACGGTGGAGAAGGTTGTGATTGTGAGTAGTGGGGTAGTGTGGACGGATGAACAGAAGGATGAGCTGTTGAAGGTGGAATCAGATACTTTGGAGATTCTTTTGCCAAGAAGTCCACATGATCTACGGTTGTTAATGAACCGGTCTTTGTACAAGCATGATGTTTTCAAGTGGGTTCCTGACTTTGTCCTCGGCAGACTCATCAAAGCTAACAATGAACACCGAAAGGAGAGAATGGAGCTACTTGAACACTTGGTGGCCAAGAAACAAGATTCAAACCTTCCTATCCTAAATCAGGAAACGCTAATAATTTGGGGTGACAAAGATAAAGTCTTCCCGTTGTTCTTGGCCCATCAGTTGCAAAGGCATTTGGGTCCCAAATCAAAATTAGAGATAATCAAGGACACGGGTCATGCAGCAAACTTTGATTCACCAGACACAGTCAATGCATTGATAAAATCATTTGTTTTGGATAGTTATCCCTCCAATATTATTGGAATTCCGATGGAGGTCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

341

Amino Acids

39.2

Weight (kDa)

7.75

Isoelectric Point (pI)

25.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	82 - 313	3.3e-22	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 318	4.9e-16	Alpha/beta hydrolase family
Hydrolase_4	PF12146	82 - 311	1.2e-08	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	302
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	1 cut(s)	762
AcsI	RAATTY	1 cut(s)	1002
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	3 cut(s)	172, 329, 656
AfiI	CCNNNNNNNGG	5 cut(s)	222, 312, 385, 445, 799
AgeI	ACCGGT	3 cut(s)	369, 438, 645
AgsI	TTSAA	7 cut(s)	115, 322, 421, 577, 673, 752, 780
AjnI	CCWGG	1 cut(s)	311
AloI	GAACNNNNNNTCC	4 cut(s)	92, 124, 329, 361
AluBI	AGCT	5 cut(s)	137, 462, 571, 713, 745
AluI	AGCT	5 cut(s)	137, 462, 571, 713, 745
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	3 cut(s)	164, 248, 500
Alw44I	GTGCAC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	108
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	2 cut(s)	762, 852
ApaLI	GTGCAC	1 cut(s)	200
ApeKI	GCWGC	1 cut(s)	920
ApoI	RAATTY	1 cut(s)	1002
ArsI	GACNNNNNNTTYG	2 cut(s)	819, 851
AsiGI	ACCGGT	3 cut(s)	369, 438, 645
Asp700I	GAANNNNTTC	1 cut(s)	26
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	4 cut(s)	376, 436, 853, 878
AsuC2I	CCSGG	1 cut(s)	240
AsuHPI	GGTGA	2 cut(s)	833, 927
AvaII	GGWCC	3 cut(s)	376, 436, 878
BaeGI	GKGCMC	1 cut(s)	204
BaeI	ACNNNNGTAYC	2 cut(s)	117, 150
BalI	TGGCCA	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	302
BbsI	GAAGAC	1 cut(s)	829
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	932
BccI	CCATC	3 cut(s)	481, 864, 1003
BciT130I	CCWGG	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	510
BcnI	CCSGG	1 cut(s)	240
BcoDI	GTCTC	3 cut(s)	164, 248, 500
BfaI	CTAG	1 cut(s)	104
BfoI	RGCGCY	1 cut(s)	229
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	1 cut(s)	921
BlsI	GCNGC	1 cut(s)	922
Bme1390I	CCNGG	2 cut(s)	240, 313
Bme18I	GGWCC	3 cut(s)	376, 436, 878
BmgT120I	GGNCC	4 cut(s)	376, 436, 853, 878
BmiI	GGNNCC	4 cut(s)	304, 681, 879, 880
BmrFI	CCNGG	2 cut(s)	240, 313
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	106
BoxI	GACNNNNGTC	1 cut(s)	912
BpiI	GAAGAC	1 cut(s)	829
BpuMI	CCSGG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	981
BsaI	GGTCTC	2 cut(s)	164, 248
BsaJI	CCNNGG	1 cut(s)	694
BsaWI	WCCGGW	5 cut(s)	369, 378, 438, 502, 645
Bsc4I	CCNNNNNNNGG	5 cut(s)	222, 312, 385, 445, 799
Bse118I	RCCGGY	4 cut(s)	222, 369, 438, 645
Bse1I	ACTGG	1 cut(s)	101
Bse8I	GATNNNNATC	1 cut(s)	981
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	3 cut(s)	492, 559, 571
BseJI	GATNNNNATC	1 cut(s)	981
BseLI	CCNNNNNNNGG	5 cut(s)	222, 312, 385, 445, 799
BseMII	CTCAG	2 cut(s)	449, 483
BseNI	ACTGG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	932
BshFI	GGCC	2 cut(s)	764, 854
BshNI	GGYRCC	1 cut(s)	302
BshTI	ACCGGT	3 cut(s)	369, 438, 645
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	8 cut(s)	223, 240, 335, 370, 379, 439, 503, 646
BslFI	GGGAC	1 cut(s)	864
BslI	CCNNNNNNNGG	5 cut(s)	222, 312, 385, 445, 799
BsmAI	GTCTC	3 cut(s)	164, 248, 500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	864
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	2 cut(s)	764, 854
Bso31I	GGTCTC	2 cut(s)	164, 248
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	502
Bsp1407I	TGTACA	2 cut(s)	170, 654
Bsp143I	GATC	2 cut(s)	100, 625
BspACI	CCGC	1 cut(s)	48
BspANI	GGCC	2 cut(s)	764, 854
BspCNI	CTCAG	2 cut(s)	450, 484
BspEI	TCCGGA	1 cut(s)	502
BspLI	GGNNCC	4 cut(s)	304, 681, 879, 880
BspPI	GGATC	1 cut(s)	108
BspT107I	GGYRCC	1 cut(s)	302
BspTNI	GGTCTC	2 cut(s)	164, 248
BsrFI	RCCGGY	4 cut(s)	222, 369, 438, 645
BsrGI	TGTACA	2 cut(s)	170, 654
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	4 cut(s)	222, 369, 438, 645
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	2 cut(s)	100, 625
Bst2UI	CCWGG	1 cut(s)	313
Bst4CI	ACNGT	6 cut(s)	199, 455, 467, 511, 633, 946
Bst6I	CTCTTC	1 cut(s)	416
BstAUI	TGTACA	2 cut(s)	170, 654
BstBAI	YACGTR	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	458, 492
BstENI	CCTNNNNNAGG	2 cut(s)	310, 797
BstF5I	GGATG	3 cut(s)	492, 559, 571
BstH2I	RGCGCY	1 cut(s)	229
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	2 cut(s)	103, 628
BstMAI	GTCTC	3 cut(s)	164, 248, 500
BstMBI	GATC	2 cut(s)	100, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	267, 340
BstNI	CCWGG	1 cut(s)	313
BstPAI	GACNNNNGTC	1 cut(s)	912
BstSCI	CCNGG	2 cut(s)	238, 311
BstSLI	GKGCMC	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	932
BstV2I	GAAGAC	1 cut(s)	829
BstX2I	RGATCY	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	764, 854
BtsCI	GGATG	3 cut(s)	492, 559, 571
CfoI	GCGC	1 cut(s)	228
Cfr10I	RCCGGY	4 cut(s)	222, 369, 438, 645
Cfr13I	GGNCC	4 cut(s)	376, 436, 853, 878
Csp6I	GTAC	3 cut(s)	171, 328, 655
CspAI	ACCGGT	3 cut(s)	369, 438, 645
CspCI	CAANNNNNGTGG	1 cut(s)	34
CviAII	CATG	5 cut(s)	257, 296, 623, 662, 917
CviQI	GTAC	3 cut(s)	171, 328, 655
DdeI	CTNAG	2 cut(s)	458, 492
DpnI	GATC	2 cut(s)	102, 627
DpnII	GATC	2 cut(s)	100, 625
DraIII	CACNNNGTG	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	762
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco31I	GGTCTC	2 cut(s)	164, 248
Eco47I	GGWCC	3 cut(s)	376, 436, 878
EcoNI	CCTNNNNNAGG	2 cut(s)	310, 797
EcoO109I	RGGNCCY	1 cut(s)	878
EcoRI	GAATTC	1 cut(s)	1002
EcoRII	CCWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	955
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	5 cut(s)	260, 299, 626, 665, 920
FaiI	YATR	7 cut(s)	142, 154, 258, 297, 624, 663, 918
FaqI	GGGAC	1 cut(s)	864
FatI	CATG	5 cut(s)	256, 295, 622, 661, 916
Fnu4HI	GCNGC	1 cut(s)	921
FokI	GGATG	3 cut(s)	499, 566, 578
Fsp4HI	GCNGC	1 cut(s)	921
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	921
HaeII	RGCGCY	1 cut(s)	229
HaeIII	GGCC	2 cut(s)	764, 854
HapII	CCGG	8 cut(s)	223, 240, 335, 370, 379, 439, 503, 646
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	260, 299, 626, 665, 920
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	5 cut(s)	584, 601, 702, 776, 932
HpaII	CCGG	8 cut(s)	223, 240, 335, 370, 379, 439, 503, 646
HphI	GGTGA	2 cut(s)	833, 927
Hpy166II	GTNNAC	7 cut(s)	184, 202, 412, 436, 451, 549, 620
Hpy188I	TCNGA	4 cut(s)	459, 486, 589, 1008
Hpy188III	TCNNGA	4 cut(s)	208, 503, 683, 800
Hpy8I	GTNNAC	7 cut(s)	184, 202, 412, 436, 451, 549, 620
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	511, 556, 571, 794
HpyCH4III	ACNGT	6 cut(s)	199, 455, 467, 511, 633, 946
HpyCH4IV	ACGT	2 cut(s)	180, 330
HpyCH4V	TGCA	4 cut(s)	202, 865, 920, 953
HpyF10VI	GCNNNNNNNGC	2 cut(s)	267, 340
HpyF3I	CTNAG	2 cut(s)	458, 492
HpySE526I	ACGT	2 cut(s)	180, 330
Hsp92II	CATG	5 cut(s)	260, 299, 626, 665, 920
HspAI	GCGC	1 cut(s)	226
KflI	GGGWCCC	1 cut(s)	878
Kpn2I	TCCGGA	1 cut(s)	502
Kzo9I	GATC	2 cut(s)	100, 625
LmnI	GCTCC	2 cut(s)	381, 742
Lsp1109I	GCAGC	1 cut(s)	932
LweI	GCATC	1 cut(s)	59
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	2 cut(s)	180, 330
MaeIII	GTNAC	1 cut(s)	821
MalI	GATC	2 cut(s)	102, 627
MboI	GATC	2 cut(s)	100, 625
MboII	GAAGA	5 cut(s)	22, 25, 103, 433, 829
MflI	RGATCY	1 cut(s)	100
MhlI	GDGCHC	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	764
MluCI	AATT	5 cut(s)	57, 271, 813, 890, 1002
MluNI	TGGCCA	1 cut(s)	764
MlyI	GAGTC	1 cut(s)	696
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	8 cut(s)	50, 80, 95, 260, 379, 704, 997, 1006
Mox20I	TGGCCA	1 cut(s)	764
Mph1103I	ATGCAT	1 cut(s)	955
MroI	TCCGGA	1 cut(s)	502
MroXI	GAANNNNTTC	1 cut(s)	26
MscI	TGGCCA	1 cut(s)	764
MseI	TTAA	1 cut(s)	638
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	764
MspI	CCGG	8 cut(s)	223, 240, 335, 370, 379, 439, 503, 646
MspR9I	CCNGG	2 cut(s)	240, 313
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	2 cut(s)	267, 340
NciI	CCSGG	1 cut(s)	240
NdeII	GATC	2 cut(s)	100, 625
NlaIII	CATG	5 cut(s)	260, 299, 626, 665, 920
NlaIV	GGNNCC	4 cut(s)	304, 681, 879, 880
NmeAIII	GCCGAG	1 cut(s)	675
NmuCI	GTSAC	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	955
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	26
PfeI	GAWTC	4 cut(s)	584, 601, 776, 932
PflFI	GACNNNGTC	2 cut(s)	689, 944
PfoI	TCCNGGA	1 cut(s)	311
PinAI	ACCGGT	3 cut(s)	369, 438, 645
PkrI	GCNGC	1 cut(s)	922
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
Ppu21I	YACGTR	1 cut(s)	331
PpuMI	RGGWCCY	1 cut(s)	878
PshAI	GACNNNNGTC	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	878
Psp6I	CCWGG	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	311
PspN4I	GGNNCC	4 cut(s)	304, 681, 879, 880
PspPI	GGNCC	4 cut(s)	376, 436, 853, 878
PspPPI	RGGWCCY	1 cut(s)	878
PsuI	RGATCY	1 cut(s)	100
PsyI	GACNNNGTC	2 cut(s)	689, 944
RsaI	GTAC	3 cut(s)	172, 329, 656
RsaNI	GTAC	3 cut(s)	171, 328, 655
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	638
SatI	GCNGC	1 cut(s)	921
Sau3AI	GATC	2 cut(s)	100, 625
Sau96I	GGNCC	4 cut(s)	376, 436, 853, 878
SchI	GAGTC	1 cut(s)	696
ScrFI	CCNGG	2 cut(s)	240, 313
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	59
SgrAI	CRCCGGYG	1 cut(s)	222
SinI	GGWCC	3 cut(s)	376, 436, 878
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	5 cut(s)	57, 271, 813, 890, 1002
SsiI	CCGC	1 cut(s)	48
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	2 cut(s)	238, 311
TaaI	ACNGT	6 cut(s)	199, 455, 467, 511, 633, 946
TaiI	ACGT	2 cut(s)	183, 333
TaqI	TCGA	2 cut(s)	177, 231
TasI	AATT	5 cut(s)	57, 271, 813, 890, 1002
TatI	WGTACW	2 cut(s)	170, 654
TfiI	GAWTC	4 cut(s)	584, 601, 776, 932
Tru1I	TTAA	1 cut(s)	638
Tru9I	TTAA	1 cut(s)	638
TseFI	GTSAC	1 cut(s)	821
TseI	GCWGC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	821
TspDTI	ATGAA	4 cut(s)	245, 570, 656, 735
TspGWI	ACGGA	2 cut(s)	279, 566
Tth111I	GACNNNGTC	2 cut(s)	689, 944
VneI	GTGCAC	1 cut(s)	200
VpaK11BI	GGWCC	3 cut(s)	376, 436, 878
XagI	CCTNNNNNAGG	2 cut(s)	310, 797
XapI	RAATTY	1 cut(s)	1002
XmnI	GAANNNNTTC	1 cut(s)	26
XspI	CTAG	1 cut(s)	104
Zsp2I	ATGCAT	1 cut(s)	955

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.