Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Forward (+)

2878720 .. 2881172

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G040000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGCAAGTAGCCAAAAAGGAAAAGCAATCACACATAGAGCACTCATATATGGCCATGGCCTACCCAAAATTGTGTAATGTCCTCTCCTTCTACCTTGCAACCATCATAGCCATTTCTCAATTCTTGATTTCCATTTTACCTTATTTGAATCCAATCACACTCCTAATCACACTTGCAGATGCACTTTTATCTCTATACTTGAGATCATGTGGTCTTTGTCCCTGCACAGTTGAATTAGATGACCAAACCACAATGAACTTTTGGGTTGCAAATTCTAGGAGGTCCAATAAGCCTGCTCTTGTAATGCTTCATGGGTATGGTGGCAATTCAAAGTGGCAATTCATCCATCAAGTGGGTTCACTTTCTCAAAGTTTCAATCTGTACATACCTGATCTATTGTTCTTTGGCAAATCCTACACCAACAGGCCAGAAAGGACAGAGGTTTTCCAAGCAAAATGTGTGGCAGAAGGGTTGAAGAGATTAGGGGTGGAGAGATTTGCTGTTTACTCTGTAAGTTATGGAGGGTATGTGGCATATTGGATGGCTGAGATGTATCCAGAGTTGGTGGAGAAAGTTGTGGTTGTGAGTTGTGGGGTTGGGATGACAGAGGAGCAGAAAAGAGAGCAGATCAATAAGGTTGGAAGCAATGCATTGAATCTCCTTGTACCTGAAAGTGCTCATGATCTGAGGCTCTTGGTGAATCTGACAGTGCACAAACCTGGCCCTTCTAAGTGGGTCCCTGATATTTTCCTTCATGGGTTCATCAATGTGACCTATAAACAACACAGGAAGGAGAAATTAGAGCTGGCAGAGCACTTGCTGAGTAAAAAAACAGATATAGACCTTCCCATTCTAACTCAGGAAACACTGATAATTTGGGGAGACAAGGATGATGTCTTCCCTGTGTACTTGGCCTATCAGCTGCAAAGGCAGTTGGGGCCAAAATCAAAGGTGGAGATAATCGAGGACACAGGTCATGCAGTAAATATGGATTCACCCATTTCCCTGAATGCTCTGATAACTTCATTCGTTTTGGGTTACTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

349

Amino Acids

39.34

Weight (kDa)

7.13

Isoelectric Point (pI)

42.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	352
AcoI	YGGCCR	1 cut(s)	51
AcsI	RAATTY	1 cut(s)	271
AfaI	GTAC	3 cut(s)	383, 666, 908
AfiI	CCNNNNNNNGG	1 cut(s)	352
AgsI	TTSAA	6 cut(s)	148, 233, 330, 376, 475, 655
AjnI	CCWGG	1 cut(s)	718
AluBI	AGCT	2 cut(s)	805, 922
AluI	AGCT	2 cut(s)	805, 922
Alw21I	GWGCWC	4 cut(s)	42, 679, 714, 816
Alw26I	GTCTC	1 cut(s)	876
Alw44I	GTGCAC	1 cut(s)	710
AoxI	GGCC	6 cut(s)	51, 57, 425, 721, 912, 938
ApaLI	GTGCAC	1 cut(s)	710
ApeKI	GCWGC	1 cut(s)	922
ApoI	RAATTY	1 cut(s)	271
AspS9I	GGNCC	4 cut(s)	282, 722, 736, 938
AsuHPI	GGTGA	2 cut(s)	709, 987
AvaII	GGWCC	2 cut(s)	282, 736
BaeGI	GKGCMC	1 cut(s)	714
BalI	TGGCCA	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	889
Bbv12I	GWGCWC	4 cut(s)	42, 679, 714, 816
BbvI	GCAGC	1 cut(s)	909
BccI	CCATC	3 cut(s)	110, 354, 535
BciT130I	CCWGG	1 cut(s)	720
BciVI	GTATCC	1 cut(s)	564
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	564
BisI	GCNGC	1 cut(s)	923
BlsI	GCNGC	1 cut(s)	924
Bme1390I	CCNGG	1 cut(s)	720
Bme18I	GGWCC	2 cut(s)	282, 736
BmgT120I	GGNCC	4 cut(s)	282, 722, 736, 938
BmiI	GGNNCC	3 cut(s)	737, 738, 939
BmrFI	CCNGG	1 cut(s)	720
BmsI	GCATC	1 cut(s)	169
BoxI	GACNNNNGTC	1 cut(s)	972
BpiI	GAAGAC	1 cut(s)	889
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	720
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	4 cut(s)	342, 546, 606, 895
BseLI	CCNNNNNNNGG	1 cut(s)	352
BseMI	GCAATG	1 cut(s)	652
BseMII	CTCAG	4 cut(s)	537, 677, 812, 872
BseRI	GAGGAG	1 cut(s)	623
BseSI	GKGCMC	1 cut(s)	714
BseXI	GCAGC	1 cut(s)	909
BsgI	GTGCAG	1 cut(s)	208
BshFI	GGCC	6 cut(s)	53, 59, 427, 723, 914, 940
BsiHKAI	GWGCWC	4 cut(s)	42, 679, 714, 816
BslFI	GGGAC	2 cut(s)	204, 722
BslI	CCNNNNNNNGG	1 cut(s)	352
BsmAI	GTCTC	1 cut(s)	876
BsmFI	GGGAC	2 cut(s)	204, 722
BsmI	GAATGC	1 cut(s)	1015
BsnI	GGCC	6 cut(s)	53, 59, 427, 723, 914, 940
Bsp1286I	GDGCHC	4 cut(s)	42, 679, 714, 816
Bsp1407I	TGTACA	1 cut(s)	381
Bsp143I	GATC	4 cut(s)	203, 391, 627, 682
Bsp19I	CCATGG	1 cut(s)	54
BspANI	GGCC	6 cut(s)	53, 59, 427, 723, 914, 940
BspCNI	CTCAG	4 cut(s)	538, 678, 813, 871
BspHI	TCATGA	1 cut(s)	679
BspLI	GGNNCC	3 cut(s)	737, 738, 939
BsrDI	GCAATG	1 cut(s)	652
BsrGI	TGTACA	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	4 cut(s)	203, 391, 627, 682
BssT1I	CCWWGG	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	720
Bst4CI	ACNGT	2 cut(s)	229, 709
Bst6I	CTCTTC	1 cut(s)	470
BstAUI	TGTACA	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	294, 807
BstDEI	CTNAG	6 cut(s)	546, 686, 729, 821, 858, 1044
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	4 cut(s)	342, 546, 606, 895
BstKTI	GATC	4 cut(s)	206, 394, 630, 685
BstMAI	GTCTC	1 cut(s)	876
BstMBI	GATC	4 cut(s)	203, 391, 627, 682
BstMWI	GCNNNNNNNGC	3 cut(s)	811, 928, 937
BstNI	CCWGG	1 cut(s)	720
BstPAI	GACNNNNGTC	1 cut(s)	972
BstSCI	CCNGG	1 cut(s)	718
BstSLI	GKGCMC	1 cut(s)	714
BstV1I	GCAGC	1 cut(s)	909
BstV2I	GAAGAC	1 cut(s)	889
BsuI	GTATCC	1 cut(s)	564
BsuRI	GGCC	6 cut(s)	53, 59, 427, 723, 914, 940
BtgI	CCRYGG	1 cut(s)	54
BtsCI	GGATG	4 cut(s)	342, 546, 606, 895
BtsIMutI	CAGTG	2 cut(s)	714, 866
Cac8I	GCNNGC	2 cut(s)	294, 807
CciI	TCATGA	1 cut(s)	679
Cfr13I	GGNCC	4 cut(s)	282, 722, 736, 938
Csp6I	GTAC	3 cut(s)	382, 665, 907
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	6 cut(s)	55, 207, 311, 680, 755, 977
CviQI	GTAC	3 cut(s)	382, 665, 907
DdeI	CTNAG	6 cut(s)	546, 686, 729, 821, 858, 1044
DpnI	GATC	4 cut(s)	205, 393, 629, 684
DpnII	GATC	4 cut(s)	203, 391, 627, 682
EaeI	YGGCCR	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	470
EarI	CTCTTC	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	282, 736
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRII	CCWGG	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	652
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	6 cut(s)	58, 210, 314, 683, 758, 980
FaqI	GGGAC	2 cut(s)	204, 722
FatI	CATG	6 cut(s)	54, 206, 310, 679, 754, 976
Fnu4HI	GCNGC	1 cut(s)	923
FokI	GGATG	4 cut(s)	329, 553, 613, 902
Fsp4HI	GCNGC	1 cut(s)	923
FspBI	CTAG	1 cut(s)	276
GluI	GCNGC	1 cut(s)	923
HaeIII	GGCC	6 cut(s)	53, 59, 427, 723, 914, 940
Hin1II	CATG	6 cut(s)	58, 210, 314, 683, 758, 980
HinfI	GANTC	4 cut(s)	148, 655, 700, 992
HphI	GGTGA	2 cut(s)	709, 987
Hpy166II	GTNNAC	4 cut(s)	359, 505, 712, 907
Hpy188I	TCNGA	3 cut(s)	687, 705, 1017
Hpy188III	TCNNGA	4 cut(s)	124, 557, 680, 860
Hpy8I	GTNNAC	4 cut(s)	359, 505, 712, 907
HpyAV	CCTTC	6 cut(s)	97, 461, 735, 761, 784, 854
HpyCH4III	ACNGT	2 cut(s)	229, 709
HpyF10VI	GCNNNNNNNGC	3 cut(s)	811, 928, 937
HpyF3I	CTNAG	6 cut(s)	546, 686, 729, 821, 858, 1044
Hsp92II	CATG	6 cut(s)	58, 210, 314, 683, 758, 980
KflI	GGGWCCC	1 cut(s)	736
Kzo9I	GATC	4 cut(s)	203, 391, 627, 682
LmnI	GCTCC	1 cut(s)	610
Lsp1109I	GCAGC	1 cut(s)	909
LweI	GCATC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	769, 1037
MalI	GATC	4 cut(s)	205, 393, 629, 684
MboI	GATC	4 cut(s)	203, 391, 627, 682
MboII	GAAGA	2 cut(s)	487, 889
MhlI	GDGCHC	4 cut(s)	42, 679, 714, 816
MlsI	TGGCCA	1 cut(s)	53
MluCI	AATT	8 cut(s)	68, 119, 233, 271, 325, 338, 797, 873
MluNI	TGGCCA	1 cut(s)	53
MmeI	TCCRAC	1 cut(s)	619
MnlI	CCTC	7 cut(s)	92, 273, 433, 515, 601, 681, 958
Mox20I	TGGCCA	1 cut(s)	53
Mph1103I	ATGCAT	1 cut(s)	652
MscI	TGGCCA	1 cut(s)	53
MslI	CAYNNNNRTG	2 cut(s)	315, 767
Msp20I	TGGCCA	1 cut(s)	53
MspA1I	CMGCKG	1 cut(s)	922
MspR9I	CCNGG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	1015
MvaI	CCWGG	1 cut(s)	720
MwoI	GCNNNNNNNGC	3 cut(s)	811, 928, 937
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	4 cut(s)	203, 391, 627, 682
NlaIII	CATG	6 cut(s)	58, 210, 314, 683, 758, 980
NlaIV	GGNNCC	3 cut(s)	737, 738, 939
NmuCI	GTSAC	1 cut(s)	769
NsiI	ATGCAT	1 cut(s)	652
PagI	TCATGA	1 cut(s)	679
PctI	GAATGC	1 cut(s)	1015
PfeI	GAWTC	4 cut(s)	148, 655, 700, 992
PflMI	CCANNNNNTGG	1 cut(s)	352
PkrI	GCNGC	1 cut(s)	924
PpuMI	RGGWCCY	1 cut(s)	736
PshAI	GACNNNNGTC	1 cut(s)	972
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	1 cut(s)	718
PspGI	CCWGG	1 cut(s)	718
PspN4I	GGNNCC	3 cut(s)	737, 738, 939
PspPI	GGNCC	4 cut(s)	282, 722, 736, 938
PspPPI	RGGWCCY	1 cut(s)	736
PvuII	CAGCTG	1 cut(s)	922
RsaI	GTAC	3 cut(s)	383, 666, 908
RsaNI	GTAC	3 cut(s)	382, 665, 907
RseI	CAYNNNNRTG	2 cut(s)	315, 767
SatI	GCNGC	1 cut(s)	923
Sau3AI	GATC	4 cut(s)	203, 391, 627, 682
Sau96I	GGNCC	4 cut(s)	282, 722, 736, 938
ScrFI	CCNGG	1 cut(s)	720
SduI	GDGCHC	4 cut(s)	42, 679, 714, 816
SfaNI	GCATC	1 cut(s)	169
SinI	GGWCC	2 cut(s)	282, 736
SmiMI	CAYNNNNRTG	2 cut(s)	315, 767
SmlI	CTYRAG	1 cut(s)	199
SmoI	CTYRAG	1 cut(s)	199
Sse9I	AATT	8 cut(s)	68, 119, 233, 271, 325, 338, 797, 873
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	718
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	229, 709
TaqI	TCGA	1 cut(s)	963
TasI	AATT	8 cut(s)	68, 119, 233, 271, 325, 338, 797, 873
TatI	WGTACW	2 cut(s)	381, 906
TfiI	GAWTC	4 cut(s)	148, 655, 700, 992
TscAI	CASTG	2 cut(s)	714, 873
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	1 cut(s)	922
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	6 cut(s)	269, 299, 331, 743, 751, 1014
TspRI	CASTG	2 cut(s)	714, 873
Van91I	CCANNNNNTGG	1 cut(s)	352
VneI	GTGCAC	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	282, 736
XapI	RAATTY	1 cut(s)	271
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.