Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000152

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Reverse (-)

195723 .. 197310

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_152G00434690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGTACACGAAGTTCTATCATGTCCTCTCCTTCTACCTCGCAACCCTAATAGCCATATACGAATTCCTTCTTTCAGTCTTACCTTATATTTTGAATCCTGCTTCGATCCTAATCGCTTTTGCAGATGCATTTTTAGGAGTATACTTCAGATTGTGTGGTCTTTCTTCTTGTATTATTGAATTAGATGAACAAACCACCATGCATTTTTGGGCTTCCAATCCTAGAAGATCTGACAAGCCTGATCTACTGATGCTTCATGGGTACGGTGGCAATTCCAAGTGGCAATTCATGCACCAAGTCGGCTCACTCTCCCGGACTTTTAATTTGTACGTGCCCGATTTACTCTTCTTTGGCAAGTCATATACAAAAATGTCCAACAGGACGGAGGTGTTCCAAGCAAAATGCGTAGCGGAAGGGTTGAGGAGACTAGGCGTTGACAGGTTTGGTGTGTACTCCATAAGCTATGGAGGATTTGTGGCATATTGGCTGGCGGAGATGCATCCGCAAGCGGTGGAGAGGCTTGTGATTGTCAGCTGTGGGATAAGGATGACAGAGGAGCAGAAAAAGGATCAGCTCAACAAGATTGGACGCAATGCATTGACGCTCCTTGTACCTGAAAGTGCTCATGATCTAAGGGGCTTGGTGAATCTTTCGGTGCACAAACCCAGTCCTGTTAGGTGGGTACCCGATGTTTTCATCCGCGGGTTTATCCATGAAACACTAATAATCTGGGGTGACAAGGATGCTGTCTTCCCAGTGAACTTGGCCTATGAGCTGCAAAGGCATTTGGGACCAAAATCAAAGGTAGAGATAATCAAGGACACAGGTCATGCAGTGAATATGGATGCACCCATCTCCCTGAATGCACTGATAACATCTTTTATTTTGGGTTACTATCAGTGTGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

304

Amino Acids

34.5

Weight (kDa)

8.19

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	83 - 180	1.1e-12	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	83 - 285	1.9e-06	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	685
AccB1I	GGYRCC	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	705
AciI	CCGC	6 cut(s)	413, 494, 506, 512, 703, 705
AclWI	GGATC	2 cut(s)	103, 579
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	133
AfaI	GTAC	6 cut(s)	8, 266, 332, 455, 615, 687
AgsI	TTSAA	2 cut(s)	97, 182
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	5 cut(s)	465, 537, 577, 778, 912
AluI	AGCT	5 cut(s)	465, 537, 577, 778, 912
Alw21I	GWGCWC	2 cut(s)	628, 663
Alw26I	GTCTC	1 cut(s)	421
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	2 cut(s)	103, 579
AoxI	GGCC	1 cut(s)	768
ApaLI	GTGCAC	1 cut(s)	659
ApeKI	GCWGC	1 cut(s)	778
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	2 cut(s)	310, 342
Asp700I	GAANNNNTTC	1 cut(s)	69
Asp718I	GGTACC	1 cut(s)	685
AspS9I	GGNCC	1 cut(s)	794
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	658, 749
AvaII	GGWCC	1 cut(s)	794
BaeGI	GKGCMC	2 cut(s)	339, 663
BanI	GGYRCC	1 cut(s)	685
BbsI	GAAGAC	1 cut(s)	745
Bbv12I	GWGCWC	2 cut(s)	628, 663
BbvI	GCAGC	1 cut(s)	765
BccI	CCATC	1 cut(s)	863
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	225, 431, 913
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	1 cut(s)	779
BlsI	GCNGC	1 cut(s)	780
Bme1390I	CCNGG	1 cut(s)	316
Bme18I	GGWCC	1 cut(s)	794
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	2 cut(s)	687, 795
BmrFI	CCNGG	1 cut(s)	316
BmrI	ACTGGG	2 cut(s)	663, 752
BmsI	GCATC	6 cut(s)	118, 243, 489, 511, 736, 838
BmuI	ACTGGG	2 cut(s)	663, 752
BoxI	GACNNNNGTC	1 cut(s)	828
BpiI	GAAGAC	1 cut(s)	745
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	703
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse1I	ACTGG	2 cut(s)	669, 758
Bse3DI	GCAATG	1 cut(s)	601
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	5 cut(s)	502, 555, 699, 751, 853
BseJI	GATNNNNATC	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	601
BseNI	ACTGG	2 cut(s)	669, 758
BseRI	GAGGAG	2 cut(s)	439, 572
BseSI	GKGCMC	2 cut(s)	339, 663
BseXI	GCAGC	1 cut(s)	765
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	1 cut(s)	770
BshNI	GGYRCC	1 cut(s)	685
BsiHKAI	GWGCWC	2 cut(s)	628, 663
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	807
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	807
BsmI	GAATGC	1 cut(s)	871
BsnI	GGCC	1 cut(s)	770
Bsp1286I	GDGCHC	3 cut(s)	339, 628, 663
Bsp143I	GATC	5 cut(s)	108, 230, 244, 571, 631
BspACI	CCGC	6 cut(s)	413, 494, 506, 512, 703, 705
BspANI	GGCC	1 cut(s)	770
BspFNI	CGCG	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	687, 795
BspPI	GGATC	2 cut(s)	103, 579
BspT107I	GGYRCC	1 cut(s)	685
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	2 cut(s)	669, 758
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	5 cut(s)	108, 230, 244, 571, 631
BssNAI	GTATAC	1 cut(s)	145
Bst1107I	GTATAC	1 cut(s)	145
Bst4CI	ACNGT	1 cut(s)	269
Bst6I	CTCTTC	1 cut(s)	353
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	2 cut(s)	492, 510
BstDEI	CTNAG	1 cut(s)	635
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	5 cut(s)	502, 555, 699, 751, 853
BstFNI	CGCG	1 cut(s)	705
BstKTI	GATC	5 cut(s)	111, 233, 247, 574, 634
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	5 cut(s)	108, 230, 244, 571, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	292, 784
BstPAI	GACNNNNGTC	1 cut(s)	828
BstSCI	CCNGG	1 cut(s)	314
BstSLI	GKGCMC	2 cut(s)	339, 663
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	765
BstV2I	GAAGAC	1 cut(s)	745
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BstZ17I	GTATAC	1 cut(s)	145
BsuRI	GGCC	1 cut(s)	770
BtgI	CCRYGG	1 cut(s)	703
BtsCI	GGATG	5 cut(s)	502, 555, 699, 751, 853
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	4 cut(s)	765, 843, 869, 908
Cac8I	GCNNGC	2 cut(s)	492, 510
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	794
Cfr42I	CCGCGG	1 cut(s)	706
CseI	GACGC	2 cut(s)	600, 613
Csp6I	GTAC	6 cut(s)	7, 265, 331, 454, 614, 686
CviAII	CATG	7 cut(s)	23, 202, 260, 292, 629, 716, 833
CviQI	GTAC	6 cut(s)	7, 265, 331, 454, 614, 686
DdeI	CTNAG	1 cut(s)	635
DpnI	GATC	5 cut(s)	110, 232, 246, 573, 633
DpnII	GATC	5 cut(s)	108, 230, 244, 571, 631
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	794
Eco57I	CTGAAG	1 cut(s)	133
EcoRI	GAATTC	1 cut(s)	65
EcoT22I	ATGCAT	4 cut(s)	133, 207, 504, 601
FaeI	CATG	7 cut(s)	26, 205, 263, 295, 632, 719, 836
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	7 cut(s)	22, 201, 259, 291, 628, 715, 832
FauI	CCCGC	1 cut(s)	698
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	1 cut(s)	779
FokI	GGATG	5 cut(s)	489, 562, 686, 758, 860
Fsp4HI	GCNGC	1 cut(s)	779
FspBI	CTAG	3 cut(s)	225, 431, 913
GluI	GCNGC	1 cut(s)	779
HaeIII	GGCC	1 cut(s)	770
HapII	CCGG	1 cut(s)	316
HgaI	GACGC	2 cut(s)	600, 613
Hin1II	CATG	7 cut(s)	26, 205, 263, 295, 632, 719, 836
HincII	GTYRAC	1 cut(s)	439
HindII	GTYRAC	1 cut(s)	439
HinfI	GANTC	2 cut(s)	97, 649
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	658, 749
Hpy166II	GTNNAC	6 cut(s)	9, 145, 439, 454, 661, 763
Hpy188I	TCNGA	2 cut(s)	152, 235
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	6 cut(s)	9, 145, 439, 454, 661, 763
HpyAV	CCTTC	3 cut(s)	43, 80, 410
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	292, 784
HpyF3I	CTNAG	1 cut(s)	635
HpySE526I	ACGT	1 cut(s)	333
Hsp92II	CATG	7 cut(s)	26, 205, 263, 295, 632, 719, 836
KpnI	GGTACC	1 cut(s)	689
KspI	CCGCGG	1 cut(s)	706
Kzo9I	GATC	5 cut(s)	108, 230, 244, 571, 631
LmnI	GCTCC	2 cut(s)	559, 612
Lsp1109I	GCAGC	1 cut(s)	765
LweI	GCATC	6 cut(s)	118, 243, 489, 511, 736, 838
MaeI	CTAG	3 cut(s)	225, 431, 913
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	737, 893, 905
MalI	GATC	5 cut(s)	110, 232, 246, 573, 633
MboI	GATC	5 cut(s)	108, 230, 244, 571, 631
MboII	GAAGA	4 cut(s)	159, 240, 340, 745
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	339, 628, 663
MluCI	AATT	5 cut(s)	65, 182, 274, 287, 325
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	7 cut(s)	38, 50, 382, 417, 464, 513, 550
Mph1103I	ATGCAT	4 cut(s)	133, 207, 504, 601
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	324
MspA1I	CMGCKG	2 cut(s)	537, 705
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	1 cut(s)	316
Mva1269I	GAATGC	1 cut(s)	871
MvnI	CGCG	1 cut(s)	705
MwoI	GCNNNNNNNGC	2 cut(s)	292, 784
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	5 cut(s)	108, 230, 244, 571, 631
NlaIII	CATG	7 cut(s)	26, 205, 263, 295, 632, 719, 836
NlaIV	GGNNCC	2 cut(s)	687, 795
NmuCI	GTSAC	2 cut(s)	737, 905
NsiI	ATGCAT	4 cut(s)	133, 207, 504, 601
PagI	TCATGA	1 cut(s)	628
PctI	GAATGC	1 cut(s)	871
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	2 cut(s)	97, 649
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	780
Ppu21I	YACGTR	1 cut(s)	334
PshAI	GACNNNNGTC	1 cut(s)	828
PspN4I	GGNNCC	2 cut(s)	687, 795
PspPI	GGNCC	1 cut(s)	794
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	230
PvuII	CAGCTG	1 cut(s)	537
RsaI	GTAC	6 cut(s)	8, 266, 332, 455, 615, 687
RsaNI	GTAC	6 cut(s)	7, 265, 331, 454, 614, 686
SacII	CCGCGG	1 cut(s)	706
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	779
Sau3AI	GATC	5 cut(s)	108, 230, 244, 571, 631
Sau96I	GGNCC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	3 cut(s)	339, 628, 663
SfaNI	GCATC	6 cut(s)	118, 243, 489, 511, 736, 838
Sfr303I	CCGCGG	1 cut(s)	706
SgrBI	CCGCGG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	794
Sse9I	AATT	5 cut(s)	65, 182, 274, 287, 325
SsiI	CCGC	6 cut(s)	413, 494, 506, 512, 703, 705
SspMI	CTAG	3 cut(s)	225, 431, 913
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	1 cut(s)	107
TasI	AATT	5 cut(s)	65, 182, 274, 287, 325
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	2 cut(s)	97, 649
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	4 cut(s)	765, 843, 876, 908
TseFI	GTSAC	2 cut(s)	737, 905
TseI	GCWGC	1 cut(s)	778
Tsp45I	GTSAC	2 cut(s)	737, 905
TspDTI	ATGAA	5 cut(s)	204, 248, 280, 688, 732
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	4 cut(s)	765, 843, 876, 908
VneI	GTGCAC	1 cut(s)	659
VpaK11BI	GGWCC	1 cut(s)	794
XapI	RAATTY	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	3 cut(s)	225, 431, 913
Zsp2I	ATGCAT	4 cut(s)	133, 207, 504, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.