Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Reverse (-)

27486759 .. 27489385

Gene Structure 2627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34830.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGCGTACACGAAGTTCTATCATGTCCTTTCCTTCTACCTGGCCACCCTCATCGCCATTTACGAGTTCCTTCTTTCAGTCTTGCCTTATATTTTGAATCCTGCTTCGATCCTAATCGCTTTTGCAGATGCATTTTTAGATTTGTACTTCAGATTTTGTGGTCTTTCTCCTTGCACTATTGAATTAGATGAACAAACCACCATGCATTTTTGGTCTTCTAATCCTAGAAGATCTAACAAGCCTGATCTACTGATGCTTCATGGCTATGGTGGCAATTCCAAGTGGCAATTCATGCATCAAGTCGGCTCACTCTCCCGGACTTTCAATTTATACGTGCCTGATCTACTCTTTTTTGGCAAGTCATACACAAAAATGTCCGACAGGACGGAGGTGTTCCAAGCAAAATGTGTAGCAGAAGGGTTGAGGAGACTAGGCGTCGAAAGGTTTGGTGTGTACTCTATAAGCTATGGAGGGTTTGTGGCATATTGGCTGGCGGCGATGTATCCGGAGGCGGTGGAGAGGCTGGTGATTGTGAGTTGCGGGATAGGAATGACAGAGGAGCAGAAGAAAGATCAGCTCAATAAGATTGGACGCAGTGCATTGAAGCTCCTTGTACCTGAAAGTGCTCATGATCTAAGGGGCTTGGTGAATATTTCAATGCACAAAGCCACTCCTGTTAAGTGGGTTCCCGATGTTGTCATCCGTGGATTTATCAATGTGACTTATGAGAAAAACAGGAAGCAGAAACTAGAGATGGCAGAGTACTTGCTGAGGGAAAAAGCAGACCTAAACCTTCCCATTTTGACTCAGGAAACACTGATAATCTGGGGTGACAAGGATGCTGTCTTCCCTGTGAACTTGGCCTATGAGCTGCAAAGGCATTTGGGACCAAAATCAAAGGTAGAGATAATCAAGGACACAGGTCATGCAGTGAATATGGATGCACCCATTTCCCTGAATGCACTGATAACATCATTTGTTTTGGGTGACAGATTTGAATCATCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

337

Amino Acids

38.23

Weight (kDa)

8.49

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	83 - 180	6e-13	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	83 - 316	9.3e-10	Alpha/beta hydrolase family
Hydrolase_4	PF12146	148 - 313	3.5e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	3 cut(s)	494, 512, 540
AclWI	GGATC	1 cut(s)	103
AcoI	YGGCCR	1 cut(s)	42
AcuI	CTGAAG	1 cut(s)	133
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	5 cut(s)	8, 146, 455, 615, 764
AgsI	TTSAA	6 cut(s)	97, 182, 325, 604, 657, 998
AhdI	GACNNNNNGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	4 cut(s)	465, 577, 607, 871
AluI	AGCT	4 cut(s)	465, 577, 607, 871
Alw21I	GWGCWC	1 cut(s)	628
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	103
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	2 cut(s)	42, 861
ApeKI	GCWGC	1 cut(s)	871
AspS9I	GGNCC	1 cut(s)	887
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	4 cut(s)	538, 658, 842, 998
AvaII	GGWCC	1 cut(s)	887
BalI	TGGCCA	1 cut(s)	44
BbsI	GAAGAC	2 cut(s)	207, 838
Bbv12I	GWGCWC	1 cut(s)	628
BbvCI	CCTCAGC	1 cut(s)	770
BbvI	GCAGC	1 cut(s)	858
BccI	CCATC	1 cut(s)	748
BciT130I	CCWGG	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	3 cut(s)	225, 431, 749
BfuI	GTATCC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	2 cut(s)	495, 872
BlsI	GCNGC	2 cut(s)	496, 873
BmcAI	AGTACT	1 cut(s)	764
Bme1390I	CCNGG	2 cut(s)	41, 316
Bme18I	GGWCC	1 cut(s)	887
BmeRI	GACNNNNNGTC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	2 cut(s)	687, 888
BmrFI	CCNGG	2 cut(s)	41, 316
BmsI	GCATC	5 cut(s)	118, 243, 304, 829, 931
BoxI	GACNNNNGTC	1 cut(s)	921
BpiI	GAAGAC	2 cut(s)	207, 838
Bpu10I	CCTNAGC	1 cut(s)	770
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	334
BsaBI	GATNNNNATC	2 cut(s)	113, 997
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	703
BsaWI	WCCGGW	1 cut(s)	505
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse8I	GATNNNNATC	2 cut(s)	113, 997
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	3 cut(s)	699, 844, 946
BseJI	GATNNNNATC	2 cut(s)	113, 997
BseMII	CTCAG	2 cut(s)	761, 821
BseRI	GAGGAG	2 cut(s)	439, 572
BseXI	GCAGC	1 cut(s)	858
BshFI	GGCC	2 cut(s)	44, 863
BsiHKAI	GWGCWC	1 cut(s)	628
BsiSI	CCGG	2 cut(s)	316, 506
BslFI	GGGAC	1 cut(s)	900
BsmAI	GTCTC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	900
BsmI	GAATGC	1 cut(s)	964
BsnI	GGCC	2 cut(s)	44, 863
Bsp1286I	GDGCHC	1 cut(s)	628
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
BspACI	CCGC	3 cut(s)	494, 512, 540
BspANI	GGCC	2 cut(s)	44, 863
BspCNI	CTCAG	2 cut(s)	762, 820
BspEI	TCCGGA	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	2 cut(s)	687, 888
BspPI	GGATC	1 cut(s)	103
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
BssNI	GRCGYC	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	41
BstACI	GRCGYC	1 cut(s)	435
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	635, 770, 807
BstDSI	CCRYGG	1 cut(s)	703
BstF5I	GGATG	3 cut(s)	699, 844, 946
BstKTI	GATC	6 cut(s)	111, 233, 247, 343, 574, 634
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 292, 877
BstNI	CCWGG	1 cut(s)	41
BstPAI	GACNNNNGTC	1 cut(s)	921
BstSCI	CCNGG	2 cut(s)	39, 314
BstV1I	GCAGC	1 cut(s)	858
BstV2I	GAAGAC	2 cut(s)	207, 838
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	44, 863
BtgI	CCRYGG	1 cut(s)	703
BtgZI	GCGATG	2 cut(s)	37, 512
BtsCI	GGATG	3 cut(s)	699, 844, 946
BtsI	GCAGTG	2 cut(s)	601, 936
BtsIMutI	CAGTG	4 cut(s)	601, 815, 936, 962
Cac8I	GCNNGC	1 cut(s)	492
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	1 cut(s)	887
CseI	GACGC	2 cut(s)	424, 600
Csp6I	GTAC	5 cut(s)	7, 145, 454, 614, 763
CviAII	CATG	6 cut(s)	23, 202, 260, 292, 629, 926
CviQI	GTAC	5 cut(s)	7, 145, 454, 614, 763
DdeI	CTNAG	3 cut(s)	635, 770, 807
DpnI	GATC	6 cut(s)	110, 232, 246, 342, 573, 633
DpnII	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
DriI	GACNNNNNGTC	1 cut(s)	434
EaeI	YGGCCR	1 cut(s)	42
Eam1105I	GACNNNNNGTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	887
Eco57I	CTGAAG	1 cut(s)	133
EcoRII	CCWGG	1 cut(s)	39
EcoT22I	ATGCAT	3 cut(s)	133, 207, 297
FaeI	CATG	6 cut(s)	26, 205, 263, 295, 632, 929
FaqI	GGGAC	1 cut(s)	900
FatI	CATG	6 cut(s)	22, 201, 259, 291, 628, 925
FauI	CCCGC	1 cut(s)	533
Fnu4HI	GCNGC	2 cut(s)	495, 872
FokI	GGATG	3 cut(s)	686, 851, 953
Fsp4HI	GCNGC	2 cut(s)	495, 872
FspBI	CTAG	3 cut(s)	225, 431, 749
GluI	GCNGC	2 cut(s)	495, 872
HaeIII	GGCC	2 cut(s)	44, 863
HapII	CCGG	2 cut(s)	316, 506
HgaI	GACGC	2 cut(s)	424, 600
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	6 cut(s)	26, 205, 263, 295, 632, 929
HinfI	GANTC	3 cut(s)	97, 805, 998
HpaII	CCGG	2 cut(s)	316, 506
HphI	GGTGA	4 cut(s)	538, 658, 842, 998
Hpy166II	GTNNAC	3 cut(s)	9, 454, 856
Hpy188I	TCNGA	2 cut(s)	152, 379
Hpy188III	TCNNGA	4 cut(s)	506, 629, 689, 809
Hpy8I	GTNNAC	3 cut(s)	9, 454, 856
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	43, 80, 410, 803
HpyCH4IV	ACGT	1 cut(s)	333
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 292, 877
HpyF3I	CTNAG	3 cut(s)	635, 770, 807
HpySE526I	ACGT	1 cut(s)	333
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	6 cut(s)	26, 205, 263, 295, 632, 929
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
LmnI	GCTCC	2 cut(s)	559, 612
Lsp1109I	GCAGC	1 cut(s)	858
LweI	GCATC	5 cut(s)	118, 243, 304, 829, 931
MaeI	CTAG	3 cut(s)	225, 431, 749
MaeII	ACGT	1 cut(s)	333
MaeIII	GTNAC	3 cut(s)	718, 830, 986
MalI	GATC	6 cut(s)	110, 232, 246, 342, 573, 633
MboI	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
MboII	GAAGA	4 cut(s)	207, 240, 577, 838
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	628
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	4 cut(s)	182, 274, 287, 325
MluNI	TGGCCA	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	799
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	8 cut(s)	59, 382, 417, 464, 502, 513, 550, 765
Mox20I	TGGCCA	1 cut(s)	44
Mph1103I	ATGCAT	3 cut(s)	133, 207, 297
MroI	TCCGGA	1 cut(s)	505
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	678
MslI	CAYNNNNRTG	2 cut(s)	264, 371
Msp20I	TGGCCA	1 cut(s)	44
MspI	CCGG	2 cut(s)	316, 506
MspR9I	CCNGG	2 cut(s)	41, 316
Mva1269I	GAATGC	1 cut(s)	964
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	3 cut(s)	270, 292, 877
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
NlaIII	CATG	6 cut(s)	26, 205, 263, 295, 632, 929
NlaIV	GGNNCC	2 cut(s)	687, 888
NmuCI	GTSAC	3 cut(s)	718, 830, 986
NsiI	ATGCAT	3 cut(s)	133, 207, 297
PagI	TCATGA	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PctI	GAATGC	1 cut(s)	964
PfeI	GAWTC	2 cut(s)	97, 998
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	496, 873
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
Ppu21I	YACGTR	1 cut(s)	334
PshAI	GACNNNNGTC	1 cut(s)	921
Psp6I	CCWGG	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	687, 888
PspPI	GGNCC	1 cut(s)	887
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	5 cut(s)	8, 146, 455, 615, 764
RsaNI	GTAC	5 cut(s)	7, 145, 454, 614, 763
RseI	CAYNNNNRTG	2 cut(s)	264, 371
SaqAI	TTAA	1 cut(s)	678
SatI	GCNGC	2 cut(s)	495, 872
Sau3AI	GATC	6 cut(s)	108, 230, 244, 340, 571, 631
Sau96I	GGNCC	1 cut(s)	887
ScaI	AGTACT	1 cut(s)	764
SchI	GAGTC	1 cut(s)	799
ScrFI	CCNGG	2 cut(s)	41, 316
SduI	GDGCHC	1 cut(s)	628
SfaNI	GCATC	5 cut(s)	118, 243, 304, 829, 931
SinI	GGWCC	1 cut(s)	887
SmiMI	CAYNNNNRTG	2 cut(s)	264, 371
Sse9I	AATT	4 cut(s)	182, 274, 287, 325
SsiI	CCGC	3 cut(s)	494, 512, 540
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	3 cut(s)	225, 431, 749
StyD4I	CCNGG	2 cut(s)	39, 314
TaiI	ACGT	1 cut(s)	336
TaqI	TCGA	2 cut(s)	107, 438
TasI	AATT	4 cut(s)	182, 274, 287, 325
TatI	WGTACW	3 cut(s)	144, 453, 762
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	97, 998
Tru1I	TTAA	1 cut(s)	678
Tru9I	TTAA	1 cut(s)	678
TscAI	CASTG	4 cut(s)	601, 822, 936, 969
TseFI	GTSAC	3 cut(s)	718, 830, 986
TseI	GCWGC	1 cut(s)	871
Tsp45I	GTSAC	3 cut(s)	718, 830, 986
TspDTI	ATGAA	3 cut(s)	204, 248, 280
TspGWI	ACGGA	2 cut(s)	401, 692
TspRI	CASTG	4 cut(s)	601, 822, 936, 969
VpaK11BI	GGWCC	1 cut(s)	887
XspI	CTAG	3 cut(s)	225, 431, 749
ZrmI	AGTACT	1 cut(s)	764
Zsp2I	ATGCAT	3 cut(s)	133, 207, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.