Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Reverse (-)

27463553 .. 27465524

Gene Structure 1972 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34800.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCTTACCAAAAGATTTGGACTGTCATCTCCCTCTACCTCGCGGCCATATCAACCATTTTCCACCACCTCAAATCCATTCTCTTCAAAACAAACTGGGATTTGATCATTTTCAGAATCCCAGATACACTTGTATCCCTCTACTACAGACTGTGCGGTCTATCTCCTTGCACCGTTGACATTAACGACCAAACCACCGTCCACTTCTGGACCACCAACCACCGCCGGTTCGACAAACCAAGCCTCGTTCTGATTCACGGCTACGGTGGCAACTCCCTGTGGCAGTTCGTCCGTCAACTCAGTCCCTTGTCCAAAAAGTTCAACGTGTACGTGCCGGATTTGCTCTTCTTTGGGAAGTCTTACACGAACAGGTCTGACCGGAGCGAGTCTTTCCAAGCCAAGTGCGTTATGGAGGGGCTGAAAAAGTTGGGGGTGGACCGGTTCTCGGTGTACGGTATTAGCTACGGCGGCTTCGTGGCGTATTGCATGGCGGAGATGTGTCCGGAGACGGTGGAGAAGGTTGTGATCGTGAGTAGCGGGGTGGTGTGGAATGATCAGCAGAAGGAGGAGTTGTTGAGGGAGAATTCAGATGCTTTGGAGATTCTTGTAGCGAAAAATCCACATGATCTACGGTTGTTAGTGAGTCGATCGATTTACAAGTTTGATGTTTTCAAGTGGGTTCCTGACTTTGTGCTTCAAAAGCTCATTGATGCTAACAAGGAAAATAGAAAGGAGAAATTAGAGCTATTGCAACACTTGGTGGCAAAGAAAGCAGATGCAGGCCTTGCTATCCTAAGTCAGGAAACGCTGATAATTTGGGGTGATCAAGATAATGTCTTCCCACTTTACATGGCCTACGACTTGCAAAGACACTTGGGCGCCAAATCAAAATTAGAGATTATCAAGGACACAGGGCATGCGGCACATTTTGATTCACCGGACACAATCAATGGATTAATAGAGTCATTTGTTTTGGGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

328

Amino Acids

37.46

Weight (kDa)

7.67

Isoelectric Point (pI)

31.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	80 - 187	1.8e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	82 - 367	3e-13	Alpha/beta hydrolase family
Abhydrolase_1	PF00561	254 - 364	2.1e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	878
AccII	CGCG	1 cut(s)	44
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	7 cut(s)	44, 156, 223, 468, 491, 537, 920
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	1 cut(s)	583
AcyI	GRCGYC	1 cut(s)	879
AdeI	CACNNNGTG	1 cut(s)	760
AfaI	GTAC	2 cut(s)	329, 452
AfiI	CCNNNNNNNGG	2 cut(s)	445, 799
AflIII	ACRYGT	1 cut(s)	324
AgeI	ACCGGT	1 cut(s)	438
AgsI	TTSAA	4 cut(s)	88, 322, 673, 698
AluBI	AGCT	3 cut(s)	462, 703, 745
AluI	AGCT	3 cut(s)	462, 703, 745
Alw26I	GTCTC	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	502
AoxI	GGCC	3 cut(s)	45, 781, 852
ApoI	RAATTY	1 cut(s)	583
AseI	ATTAAT	1 cut(s)	956
AsiGI	ACCGGT	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	881
AspS9I	GGNCC	2 cut(s)	210, 436
AsuHPI	GGTGA	2 cut(s)	833, 927
AvaII	GGWCC	2 cut(s)	210, 436
BaeI	ACNNNNGTAYC	4 cut(s)	117, 117, 150, 150
BanI	GGYRCC	1 cut(s)	878
BbsI	GAAGAC	1 cut(s)	829
BceAI	ACGGC	2 cut(s)	274, 481
BciVI	GTATCC	1 cut(s)	145
BclI	TGATCA	3 cut(s)	105, 553, 823
BcoDI	GTCTC	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	882
BfuI	GTATCC	1 cut(s)	145
BisI	GCNGC	3 cut(s)	45, 469, 921
BlsI	GCNGC	3 cut(s)	46, 470, 922
Bme18I	GGWCC	2 cut(s)	210, 436
BmgT120I	GGNCC	2 cut(s)	210, 436
BmiI	GGNNCC	2 cut(s)	681, 880
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	3 cut(s)	580, 700, 766
BmuI	ACTGGG	1 cut(s)	106
BpiI	GAAGAC	1 cut(s)	829
Bsa29I	ATCGAT	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	331
BsaHI	GRCGYC	1 cut(s)	879
BsaWI	WCCGGW	4 cut(s)	378, 438, 502, 937
BsaXI	ACNNNNNCTCC	2 cut(s)	557, 587
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 799
Bse118I	RCCGGY	2 cut(s)	225, 438
Bse1I	ACTGG	1 cut(s)	101
BseAI	TCCGGA	1 cut(s)	502
BseCI	ATCGAT	1 cut(s)	650
BseLI	CCNNNNNNNGG	2 cut(s)	445, 799
BseMII	CTCAG	1 cut(s)	313
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	1 cut(s)	581
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	650
BshFI	GGCC	3 cut(s)	47, 783, 854
BshNI	GGYRCC	1 cut(s)	878
BshTI	ACCGGT	1 cut(s)	438
BshVI	ATCGAT	1 cut(s)	650
BsiEI	CGRYCG	1 cut(s)	650
BsiSI	CCGG	6 cut(s)	226, 335, 379, 439, 503, 938
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	445, 799
BsmAI	GTCTC	1 cut(s)	500
BsmBI	CGTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	47, 783, 854
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
BspACI	CCGC	7 cut(s)	44, 156, 223, 468, 491, 537, 920
BspANI	GGCC	3 cut(s)	47, 783, 854
BspCNI	CTCAG	1 cut(s)	312
BspDI	ATCGAT	1 cut(s)	650
BspEI	TCCGGA	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	681, 880
BspQI	GCTCTTC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	878
BsrFI	RCCGGY	2 cut(s)	225, 438
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	2 cut(s)	225, 438
BssMI	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
BssNI	GRCGYC	1 cut(s)	879
Bst4CI	ACNGT	8 cut(s)	25, 153, 175, 199, 266, 455, 511, 633
Bst6I	CTCTTC	2 cut(s)	89, 350
BstACI	GRCGYC	1 cut(s)	879
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstBAI	YACGTR	1 cut(s)	331
BstC8I	GCNNGC	2 cut(s)	781, 918
BstDEI	CTNAG	2 cut(s)	299, 794
BstENI	CCTNNNNNAGG	1 cut(s)	797
BstFNI	CGCG	1 cut(s)	44
BstH2I	RGCGCY	1 cut(s)	882
BstHHI	GCGC	1 cut(s)	881
BstKTI	GATC	6 cut(s)	108, 528, 556, 628, 650, 826
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
BstMCI	CGRYCG	1 cut(s)	650
BstMWI	GCNNNNNNNGC	6 cut(s)	267, 340, 468, 700, 770, 785
BstNSI	RCATGY	1 cut(s)	920
BstSFI	CTRYAG	1 cut(s)	145
BstUI	CGCG	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	829
Bsu15I	ATCGAT	1 cut(s)	650
BsuI	GTATCC	1 cut(s)	145
BsuRI	GGCC	3 cut(s)	47, 783, 854
BsuTUI	ATCGAT	1 cut(s)	650
Cac8I	GCNNGC	2 cut(s)	781, 918
CfoI	GCGC	1 cut(s)	881
Cfr10I	RCCGGY	2 cut(s)	225, 438
Cfr13I	GGNCC	2 cut(s)	210, 436
ClaI	ATCGAT	1 cut(s)	650
Csp6I	GTAC	2 cut(s)	328, 451
CspAI	ACCGGT	1 cut(s)	438
CviAII	CATG	4 cut(s)	487, 623, 850, 917
CviQI	GTAC	2 cut(s)	328, 451
DdeI	CTNAG	2 cut(s)	299, 794
DinI	GGCGCC	1 cut(s)	880
DpnI	GATC	6 cut(s)	107, 527, 555, 627, 649, 825
DpnII	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
DraIII	CACNNNGTG	1 cut(s)	760
DrdI	GACNNNNNNGTC	1 cut(s)	156
DseDI	GACNNNNNNGTC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	2 cut(s)	89, 350
EarI	CTCTTC	2 cut(s)	89, 350
EciI	GGCGGA	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	783
Eco47I	GGWCC	2 cut(s)	210, 436
EcoNI	CCTNNNNNAGG	1 cut(s)	797
EcoRI	GAATTC	1 cut(s)	583
EgeI	GGCGCC	1 cut(s)	880
EheI	GGCGCC	1 cut(s)	880
Esp3I	CGTCTC	1 cut(s)	500
FaeI	CATG	4 cut(s)	490, 626, 853, 920
FaiI	YATR	6 cut(s)	50, 410, 488, 624, 851, 918
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	4 cut(s)	486, 622, 849, 916
FauI	CCCGC	1 cut(s)	530
FbaI	TGATCA	3 cut(s)	105, 553, 823
Fnu4HI	GCNGC	3 cut(s)	45, 469, 921
Fsp4HI	GCNGC	3 cut(s)	45, 469, 921
GlaI	GCGC	1 cut(s)	880
GluI	GCNGC	3 cut(s)	45, 469, 921
HaeII	RGCGCY	1 cut(s)	882
HaeIII	GGCC	3 cut(s)	47, 783, 854
HapII	CCGG	6 cut(s)	226, 335, 379, 439, 503, 938
HhaI	GCGC	1 cut(s)	881
Hin1I	GRCGYC	1 cut(s)	879
Hin1II	CATG	4 cut(s)	490, 626, 853, 920
Hin6I	GCGC	1 cut(s)	879
HinP1I	GCGC	1 cut(s)	879
HincII	GTYRAC	2 cut(s)	178, 296
HindII	GTYRAC	2 cut(s)	178, 296
HinfI	GANTC	7 cut(s)	117, 253, 386, 601, 643, 932, 962
HpaII	CCGG	6 cut(s)	226, 335, 379, 439, 503, 938
HphI	GGTGA	2 cut(s)	833, 927
Hpy166II	GTNNAC	6 cut(s)	178, 202, 296, 328, 436, 451
Hpy188I	TCNGA	4 cut(s)	116, 252, 376, 589
Hpy188III	TCNNGA	6 cut(s)	208, 503, 529, 683, 800, 827
Hpy8I	GTNNAC	6 cut(s)	178, 202, 296, 328, 436, 451
HpyAV	CCTTC	2 cut(s)	511, 556
HpyCH4III	ACNGT	8 cut(s)	25, 153, 175, 199, 266, 455, 511, 633
HpyCH4IV	ACGT	2 cut(s)	324, 330
HpyCH4V	TGCA	5 cut(s)	171, 486, 751, 779, 865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	267, 340, 468, 700, 770, 785
HpyF3I	CTNAG	2 cut(s)	299, 794
HpySE526I	ACGT	2 cut(s)	324, 330
Hsp92I	GRCGYC	1 cut(s)	879
Hsp92II	CATG	4 cut(s)	490, 626, 853, 920
HspAI	GCGC	1 cut(s)	879
KasI	GGCGCC	1 cut(s)	878
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	3 cut(s)	105, 553, 823
Kzo9I	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
LguI	GCTCTTC	1 cut(s)	350
LmnI	GCTCC	1 cut(s)	381
LweI	GCATC	3 cut(s)	580, 700, 766
MaeII	ACGT	2 cut(s)	324, 330
MalI	GATC	6 cut(s)	107, 527, 555, 627, 649, 825
MboI	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
MboII	GAAGA	3 cut(s)	76, 337, 829
MluCI	AATT	4 cut(s)	583, 737, 813, 890
Mly113I	GGCGCC	1 cut(s)	879
MlyI	GAGTC	3 cut(s)	395, 652, 971
MnlI	CCTC	8 cut(s)	44, 50, 80, 149, 254, 406, 559, 570
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	3 cut(s)	183, 956, 982
MspI	CCGG	6 cut(s)	226, 335, 379, 439, 503, 938
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	6 cut(s)	267, 340, 468, 700, 770, 785
NarI	GGCGCC	1 cut(s)	879
NdeII	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
NlaIII	CATG	4 cut(s)	490, 626, 853, 920
NlaIV	GGNNCC	2 cut(s)	681, 880
NspI	RCATGY	1 cut(s)	920
PaeI	GCATGC	1 cut(s)	920
PceI	AGGCCT	1 cut(s)	783
PciSI	GCTCTTC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PfeI	GAWTC	4 cut(s)	117, 253, 601, 932
PinAI	ACCGGT	1 cut(s)	438
PkrI	GCNGC	3 cut(s)	46, 470, 922
Ple19I	CGATCG	1 cut(s)	650
PleI	GAGTC	3 cut(s)	394, 651, 970
PluTI	GGCGCC	1 cut(s)	882
PpsI	GAGTC	3 cut(s)	394, 651, 970
Ppu21I	YACGTR	1 cut(s)	331
PshBI	ATTAAT	1 cut(s)	956
PspN4I	GGNNCC	2 cut(s)	681, 880
PspPI	GGNCC	2 cut(s)	210, 436
PvuI	CGATCG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	329, 452
RsaNI	GTAC	2 cut(s)	328, 451
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	183, 956, 982
SatI	GCNGC	3 cut(s)	45, 469, 921
Sau3AI	GATC	6 cut(s)	105, 525, 553, 625, 647, 823
Sau96I	GGNCC	2 cut(s)	210, 436
SchI	GAGTC	3 cut(s)	395, 652, 971
SetI	ASST	9 cut(s)	42, 72, 327, 333, 374, 464, 522, 705, 747
SfaNI	GCATC	3 cut(s)	580, 700, 766
SfcI	CTRYAG	1 cut(s)	145
SfoI	GGCGCC	1 cut(s)	880
SinI	GGWCC	2 cut(s)	210, 436
SphI	GCATGC	1 cut(s)	920
Sse9I	AATT	4 cut(s)	583, 737, 813, 890
SseBI	AGGCCT	1 cut(s)	783
SsiI	CCGC	7 cut(s)	44, 156, 223, 468, 491, 537, 920
SspDI	GGCGCC	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	783
TaaI	ACNGT	8 cut(s)	25, 153, 175, 199, 266, 455, 511, 633
TaiI	ACGT	2 cut(s)	327, 333
TaqI	TCGA	3 cut(s)	231, 646, 650
TasI	AATT	4 cut(s)	583, 737, 813, 890
TauI	GCSGC	3 cut(s)	47, 471, 923
TfiI	GAWTC	4 cut(s)	117, 253, 601, 932
Tru1I	TTAA	3 cut(s)	183, 956, 982
Tru9I	TTAA	3 cut(s)	183, 956, 982
TspGWI	ACGGA	1 cut(s)	281
VpaK11BI	GGWCC	2 cut(s)	210, 436
VspI	ATTAAT	1 cut(s)	956
XagI	CCTNNNNNAGG	1 cut(s)	797
XapI	RAATTY	1 cut(s)	583
XceI	RCATGY	1 cut(s)	920
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.