Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000134.1

Orthogroup ID

OG0001654

Physical Location & Seq

Genomic Coordinates Reverse (-)

222568 .. 224793

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000134.1_g000060.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atggcgtacacgaagttctatcatgtcctctccttctacctcgcaaccctaatagccatatacgaattccttctttcagtcttgccttatattttgaatcctgcttccatcctaatcgcttttgcagatgcatttttaggagtatacttcagattgtgtggtctttcttcttgtactattgaattagatgaacaaaccaccatgcatttttgggcttgcaatcctagaagatctgacaagcctgatctactgatgcttcacgggtatggtggcaattccaagtggcaattcatgcaccaagtcggctcactctcccggacttttaatttgtacgtgcccgatttactcttctttggcaagtcatacacaaaaatgtccgacaggacggaggtgttccaagcaaaatgtgtagcggcagggttgatgagactaggcattgacaggtttggtgtgtactctataagctatggagggtttgtggcatattggctggcggagatgtatccgcaggcggtggagaggcttgtgattgtgagctgtgggatagggatgacagaggagcagaaaaaggatcagctcaacaagattggacgcaatgcattgaagctccttgtacctgaaagtgctcatgatctaaggggcttggtgaatctttcggtgcacaaacccagtcctgttagggggctacctgatgttttcatccgtgggtttatccatagggttttggtggagaacgaagctctggttgcatccatggcggtcgtgcaactcgaatgtggccggagacggcgaatcagtcctaccaagaacccagatttcggtgaaggtgcgaatgacgtcgtccggcttcaggttggcagcgaggcttcttggttttcatctccgacgaagtctgagtcaaatggttatggcggtgtgctgaaggagttgccagaattggaggatgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

316

Amino Acids

35.39

Weight (kDa)

7.63

Isoelectric Point (pI)

48.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17430 AT1G72620
fragaria_vesca	FvH4_6g34800 FvH4_6g34800 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830 FvH4_6g34830
malus_domestica	MD09G1181900.v1.1 MD09G1182500.v1.1
prunus_persica	Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1 Prupe.3G040000_v2.0.a1
pyrus_communis	pycom09g09950 pycom09g09980
rosa_chinensis	RchiOBHm_Chr2g0126411 RchiOBHm_Chr2g0145661 RchiOBHm_Chr2g0145691
rosa_laevigata	RLG00000020157 RLG00000020163
rosa_multiflora	Rmu_sc0003046.1_g000003 Rmu_ssc0000134.1_g000060
rosa_roxburghii	Rroxscaffold_152G00434670 Rroxscaffold_152G00434680 Rroxscaffold_152G00434690 Rroxscaffold_2G00100510 Rroxscaffold_2G00100520 Rroxscaffold_2G00100570
rosa_rugosa	Rorug02G0392500 Rorug02G0392600 Rorug02G0392600 Rorug02G0392700 Rorug02G0392800
rosa_samantha	Rh2AG447000 Rh2AG447200 Rh2BG328600 Rh2BG458900 Rh2BG459200 Rh2CG308100 Rh2CG433600 Rh2CG433800 Rh2DG347900 Rh2DG468300 Rh2DG468600
rosa_wichuraiana	Rw2G036500 Rw2G036530 Rw7G024420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	840
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	6 cut(s)	413, 494, 506, 512, 758, 912
AclWI	GGATC	1 cut(s)	579
AcoI	YGGCCR	1 cut(s)	778
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	3 cut(s)	133, 833, 941
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	5 cut(s)	8, 175, 332, 455, 615
AfiI	CCNNNNNNNGG	3 cut(s)	680, 818, 850
AgsI	TTSAA	3 cut(s)	97, 182, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	272, 304
AluBI	AGCT	5 cut(s)	465, 537, 577, 607, 740
AluI	AGCT	5 cut(s)	465, 537, 577, 607, 740
Alw21I	GWGCWC	2 cut(s)	628, 663
Alw26I	GTCTC	2 cut(s)	421, 778
Alw44I	GTGCAC	1 cut(s)	659
AlwI	GGATC	1 cut(s)	579
AoxI	GGCC	1 cut(s)	778
ApaLI	GTGCAC	1 cut(s)	659
ApeKI	GCWGC	1 cut(s)	858
ApoI	RAATTY	1 cut(s)	65
ArsI	GACNNNNNNTTYG	4 cut(s)	310, 342, 881, 913
Asp700I	GAANNNNTTC	1 cut(s)	69
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	658, 833
BaeGI	GKGCMC	2 cut(s)	339, 663
Bbv12I	GWGCWC	2 cut(s)	628, 663
BbvI	GCAGC	1 cut(s)	870
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	1 cut(s)	803
BciVI	GTATCC	1 cut(s)	513
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	421, 778
BfaI	CTAG	2 cut(s)	225, 431
BfuI	GTATCC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	2 cut(s)	414, 859
BlsI	GCNGC	2 cut(s)	415, 860
Bme1390I	CCNGG	1 cut(s)	316
BmrFI	CCNGG	1 cut(s)	316
BmrI	ACTGGG	1 cut(s)	663
BmsI	GCATC	4 cut(s)	118, 243, 758, 934
BmuI	ACTGGG	1 cut(s)	663
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	1 cut(s)	334
BsaHI	GRCGYC	1 cut(s)	837
BsaJI	CCNNGG	2 cut(s)	703, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	3 cut(s)	680, 818, 850
Bse1I	ACTGG	1 cut(s)	669
Bse3DI	GCAATG	1 cut(s)	601
BseDI	CCNNGG	2 cut(s)	703, 753
BseGI	GGATG	5 cut(s)	108, 555, 699, 749, 949
BseLI	CCNNNNNNNGG	3 cut(s)	680, 818, 850
BseMI	GCAATG	1 cut(s)	601
BseMII	CTCAG	1 cut(s)	885
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	572
BseSI	GKGCMC	2 cut(s)	339, 663
BseXI	GCAGC	1 cut(s)	870
Bsh1285I	CGRYCG	1 cut(s)	762
BshFI	GGCC	1 cut(s)	780
BsiEI	CGRYCG	1 cut(s)	762
BsiHKAI	GWGCWC	2 cut(s)	628, 663
BsiSI	CCGG	3 cut(s)	316, 781, 844
BslI	CCNNNNNNNGG	3 cut(s)	680, 818, 850
BsmAI	GTCTC	2 cut(s)	421, 778
BsmBI	CGTCTC	1 cut(s)	778
BsnI	GGCC	1 cut(s)	780
Bsp1286I	GDGCHC	3 cut(s)	339, 628, 663
Bsp143I	GATC	4 cut(s)	230, 244, 571, 631
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	6 cut(s)	413, 494, 506, 512, 758, 912
BspANI	GGCC	1 cut(s)	780
BspCNI	CTCAG	1 cut(s)	886
BspHI	TCATGA	1 cut(s)	628
BspPI	GGATC	1 cut(s)	579
BsrDI	GCAATG	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	669
BssECI	CCNNGG	2 cut(s)	703, 753
BssMI	GATC	4 cut(s)	230, 244, 571, 631
BssNAI	GTATAC	1 cut(s)	145
BssNI	GRCGYC	1 cut(s)	837
BssT1I	CCWWGG	1 cut(s)	753
Bst1107I	GTATAC	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	837
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	334
BstC8I	GCNNGC	3 cut(s)	217, 492, 510
BstDEI	CTNAG	2 cut(s)	635, 894
BstDSI	CCRYGG	2 cut(s)	703, 753
BstF5I	GGATG	5 cut(s)	108, 555, 699, 749, 949
BstKTI	GATC	4 cut(s)	233, 247, 574, 634
BstMAI	GTCTC	2 cut(s)	421, 778
BstMBI	GATC	4 cut(s)	230, 244, 571, 631
BstMCI	CGRYCG	1 cut(s)	762
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 746, 755
BstSCI	CCNGG	1 cut(s)	314
BstSLI	GKGCMC	2 cut(s)	339, 663
BstV1I	GCAGC	1 cut(s)	870
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
BstZ17I	GTATAC	1 cut(s)	145
BsuI	GTATCC	1 cut(s)	513
BsuRI	GGCC	1 cut(s)	780
BtgI	CCRYGG	2 cut(s)	703, 753
BtsCI	GGATG	5 cut(s)	108, 555, 699, 749, 949
Cac8I	GCNNGC	3 cut(s)	217, 492, 510
CciI	TCATGA	1 cut(s)	628
CseI	GACGC	1 cut(s)	600
Csp6I	GTAC	5 cut(s)	7, 174, 331, 454, 614
CviAII	CATG	5 cut(s)	23, 202, 292, 629, 754
CviQI	GTAC	5 cut(s)	7, 174, 331, 454, 614
DdeI	CTNAG	2 cut(s)	635, 894
DpnI	GATC	4 cut(s)	232, 246, 573, 633
DpnII	GATC	4 cut(s)	230, 244, 571, 631
EaeI	YGGCCR	1 cut(s)	778
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	753
Eco57I	CTGAAG	3 cut(s)	133, 833, 941
EcoRI	GAATTC	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	753
EcoT22I	ATGCAT	4 cut(s)	133, 207, 601, 949
ErhI	CCWWGG	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	778
FaeI	CATG	5 cut(s)	26, 205, 295, 632, 757
FatI	CATG	5 cut(s)	22, 201, 291, 628, 753
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	2 cut(s)	414, 859
FokI	GGATG	4 cut(s)	95, 562, 686, 736
Fsp4HI	GCNGC	2 cut(s)	414, 859
FspBI	CTAG	2 cut(s)	225, 431
GluI	GCNGC	2 cut(s)	414, 859
HaeIII	GGCC	1 cut(s)	780
HapII	CCGG	3 cut(s)	316, 781, 844
HgaI	GACGC	1 cut(s)	600
Hin1I	GRCGYC	1 cut(s)	837
Hin1II	CATG	5 cut(s)	26, 205, 295, 632, 757
HinfI	GANTC	4 cut(s)	97, 649, 792, 896
HpaII	CCGG	3 cut(s)	316, 781, 844
HphI	GGTGA	2 cut(s)	658, 833
Hpy166II	GTNNAC	4 cut(s)	9, 145, 454, 661
Hpy188I	TCNGA	5 cut(s)	152, 235, 379, 885, 895
Hpy188III	TCNNGA	1 cut(s)	629
Hpy8I	GTNNAC	4 cut(s)	9, 145, 454, 661
Hpy99I	CGWCG	2 cut(s)	842, 889
HpyAV	CCTTC	4 cut(s)	43, 80, 818, 916
HpyCH4IV	ACGT	2 cut(s)	333, 837
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 746, 755
HpyF3I	CTNAG	2 cut(s)	635, 894
HpySE526I	ACGT	2 cut(s)	333, 837
Hsp92I	GRCGYC	1 cut(s)	837
Hsp92II	CATG	5 cut(s)	26, 205, 295, 632, 757
Kzo9I	GATC	4 cut(s)	230, 244, 571, 631
LmnI	GCTCC	2 cut(s)	559, 612
Lsp1109I	GCAGC	1 cut(s)	870
LweI	GCATC	4 cut(s)	118, 243, 758, 934
MaeI	CTAG	2 cut(s)	225, 431
MaeII	ACGT	2 cut(s)	333, 837
MalI	GATC	4 cut(s)	232, 246, 573, 633
MboI	GATC	4 cut(s)	230, 244, 571, 631
MboII	GAAGA	3 cut(s)	159, 240, 340
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	3 cut(s)	339, 628, 663
MluCI	AATT	6 cut(s)	65, 182, 274, 287, 325, 935
MlyI	GAGTC	1 cut(s)	905
MmeI	TCCRAC	2 cut(s)	402, 908
MnlI	CCTC	8 cut(s)	38, 50, 382, 464, 513, 550, 856, 934
Mph1103I	ATGCAT	4 cut(s)	133, 207, 601, 949
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	324
MslI	CAYNNNNRTG	2 cut(s)	264, 371
MspI	CCGG	3 cut(s)	316, 781, 844
MspR9I	CCNGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	3 cut(s)	292, 746, 755
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	4 cut(s)	230, 244, 571, 631
NlaIII	CATG	5 cut(s)	26, 205, 295, 632, 757
NsiI	ATGCAT	4 cut(s)	133, 207, 601, 949
PagI	TCATGA	1 cut(s)	628
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	97, 649, 792
PflFI	GACNNNGTC	2 cut(s)	839, 889
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	2 cut(s)	415, 860
PleI	GAGTC	1 cut(s)	904
PpsI	GAGTC	1 cut(s)	904
Ppu21I	YACGTR	1 cut(s)	334
PsrI	GAACNNNNNNTAC	1 cut(s)	31
PsuI	RGATCY	1 cut(s)	230
PsyI	GACNNNGTC	2 cut(s)	839, 889
RsaI	GTAC	5 cut(s)	8, 175, 332, 455, 615
RsaNI	GTAC	5 cut(s)	7, 174, 331, 454, 614
RseI	CAYNNNNRTG	2 cut(s)	264, 371
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	2 cut(s)	414, 859
Sau3AI	GATC	4 cut(s)	230, 244, 571, 631
SchI	GAGTC	1 cut(s)	905
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	3 cut(s)	339, 628, 663
SfaNI	GCATC	4 cut(s)	118, 243, 758, 934
SmiMI	CAYNNNNRTG	2 cut(s)	264, 371
Sse9I	AATT	6 cut(s)	65, 182, 274, 287, 325, 935
SsiI	CCGC	6 cut(s)	413, 494, 506, 512, 758, 912
SspMI	CTAG	2 cut(s)	225, 431
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	753
TaiI	ACGT	2 cut(s)	336, 840
TaqI	TCGA	1 cut(s)	771
TasI	AATT	6 cut(s)	65, 182, 274, 287, 325, 935
TatI	WGTACW	2 cut(s)	173, 453
TauI	GCSGC	1 cut(s)	416
TfiI	GAWTC	3 cut(s)	97, 649, 792
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TseI	GCWGC	1 cut(s)	858
TspDTI	ATGAA	4 cut(s)	204, 280, 688, 867
TspGWI	ACGGA	2 cut(s)	401, 692
Tth111I	GACNNNGTC	2 cut(s)	839, 889
VneI	GTGCAC	1 cut(s)	659
XapI	RAATTY	1 cut(s)	65
XmiI	GTMKAC	1 cut(s)	144
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	2 cut(s)	225, 431
ZraI	GACGTC	1 cut(s)	838
Zsp2I	ATGCAT	4 cut(s)	133, 207, 601, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.