Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

6969025 .. 6971036

Gene Structure 2012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G20100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGTCACGATATTTCACATCCCCACCGCCTGTGTATGCGAGGAACTGGGCGAACGGTCAAAACTTGGTCGAATGGACTAAGATCGAAAGACCAATAGTTGATTCTAAAAAGCTGCATCGGAAAGAGAAGAAGGAGAAAAAGAAAGAAAAGAAATTAAAGAAAGAGAAGAAATCCCTTGAACAGAAGTATTCCACAACCAAGACAGTCTCATATGAATCCGAACAGCTTGAGAAATCTTGTTTAACAGAAGAATTTGAGCAACCTCAGGTTGGATATTTGTCTGATGGTAGCCAGAACAGTAAGAAGAGAAGAAGGGAAACTTCTCCTGCTGTTGTTGAGAGTCAAATCAAAGCTACACCTGTAGCTGGTAAACCACTACGGATTCGTATTGTTTTCAAGAAACCGAAAGAAGCTGAAGCTGTACCTCAAGAGGATCCTGTTTGTTCCACTTCAGGGACTCAGAGACCTAGCGAATTACCAAGTTCTGTCTCTCTTCCAAGTATCTGTGATCATGATGTGGCTGTACCCTCAACTTCTCTTGAGAGTGGCAAGGTAGCAATTATTTCCGAATCAAAGAAGAGAAAGAAACATAAGCCTAGCAAAGAATCCCGGTACAATTCATTGTTTGATGAATTAGTTCCTCCCTGTATTTCCTTGGAGGAAGATGATAGCAGCAGCGATGACTGGCTTTTTGGAACAAGTCGGAAAGAAAATGTTTCTTCTGCCAAGTCTTCTTATAAGACTGATGAAGACACGATCATGAGCTTGCAGACGTCAAGAGATTGTTCCTCTTTGCCTAGAGCTATGTTATTGTCTGAAGTTGGAATTTTTTCATTACCATATACTGTCCCGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.17

Weight (kDa)

9.13

Isoelectric Point (pI)

60.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
AatII	GACGTC	1 cut(s)	776
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	2 cut(s)	428, 441
AcsI	RAATTY	2 cut(s)	251, 825
AcuI	CTGAAG	3 cut(s)	435, 435, 837
AcyI	GRCGYC	1 cut(s)	773
AfaI	GTAC	3 cut(s)	423, 525, 614
AfiI	CCNNNNNNNGG	3 cut(s)	269, 365, 453
AgsI	TTSAA	2 cut(s)	179, 397
AjuI	GAANNNNNNNTTGG	2 cut(s)	85, 117
AluBI	AGCT	8 cut(s)	112, 226, 353, 365, 413, 419, 765, 803
AluI	AGCT	8 cut(s)	112, 226, 353, 365, 413, 419, 765, 803
Alw26I	GTCTC	3 cut(s)	211, 457, 493
AlwI	GGATC	2 cut(s)	428, 441
ApeKI	GCWGC	3 cut(s)	112, 672, 675
ApoI	RAATTY	2 cut(s)	251, 825
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	2 cut(s)	636, 829
AsuC2I	CCSGG	1 cut(s)	610
AxyI	CCTNAGG	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	433
BbsI	GAAGAC	2 cut(s)	723, 756
BbvI	GCAGC	3 cut(s)	99, 684, 687
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	211, 457, 493
BfaI	CTAG	3 cut(s)	468, 597, 798
BfmI	CTRYAG	1 cut(s)	360
BisI	GCNGC	3 cut(s)	113, 673, 676
BlsI	GCNGC	3 cut(s)	114, 674, 677
Bme1390I	CCNGG	1 cut(s)	610
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	610
BmrI	ACTGGG	1 cut(s)	55
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	55
BpiI	GAAGAC	2 cut(s)	723, 756
BpuEI	CTTGAG	3 cut(s)	248, 411, 560
BpuMI	CCSGG	1 cut(s)	610
BsaHI	GRCGYC	1 cut(s)	773
BsaI	GGTCTC	1 cut(s)	457
BsaJI	CCNNGG	1 cut(s)	654
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 365, 453
Bse1I	ACTGG	2 cut(s)	50, 689
Bse21I	CCTNAGG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	654
BseGI	GGATG	1 cut(s)	17
BseLI	CCNNNNNNNGG	3 cut(s)	269, 365, 453
BseMII	CTCAG	2 cut(s)	278, 473
BseNI	ACTGG	2 cut(s)	50, 689
BseXI	GCAGC	3 cut(s)	99, 684, 687
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	2 cut(s)	469, 833
BslI	CCNNNNNNNGG	3 cut(s)	269, 365, 453
BsmAI	GTCTC	3 cut(s)	211, 457, 493
BsmFI	GGGAC	2 cut(s)	469, 833
Bso31I	GGTCTC	1 cut(s)	457
Bsp143I	GATC	4 cut(s)	81, 433, 508, 756
BspACI	CCGC	1 cut(s)	26
BspCNI	CTCAG	2 cut(s)	277, 472
BspHI	TCATGA	2 cut(s)	511, 759
BspLI	GGNNCC	1 cut(s)	435
BspPI	GGATC	2 cut(s)	428, 441
BspTNI	GGTCTC	1 cut(s)	457
BsrI	ACTGG	2 cut(s)	50, 689
BssECI	CCNNGG	1 cut(s)	654
BssMI	GATC	4 cut(s)	81, 433, 508, 756
BssNI	GRCGYC	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	654
Bst4CI	ACNGT	4 cut(s)	56, 205, 299, 847
Bst6I	CTCTTC	3 cut(s)	299, 498, 572
BstACI	GRCGYC	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	767
BstDEI	CTNAG	3 cut(s)	78, 264, 459
BstF5I	GGATG	1 cut(s)	17
BstKTI	GATC	4 cut(s)	84, 436, 511, 759
BstMAI	GTCTC	3 cut(s)	211, 457, 493
BstMBI	GATC	4 cut(s)	81, 433, 508, 756
BstSCI	CCNGG	1 cut(s)	608
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	3 cut(s)	99, 684, 687
BstV2I	GAAGAC	2 cut(s)	723, 756
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
Bsu36I	CCTNAGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	693
BtsCI	GGATG	1 cut(s)	17
Cac8I	GCNNGC	1 cut(s)	767
CciI	TCATGA	2 cut(s)	511, 759
Csp6I	GTAC	3 cut(s)	422, 524, 613
CviAII	CATG	2 cut(s)	512, 760
CviQI	GTAC	3 cut(s)	422, 524, 613
DdeI	CTNAG	3 cut(s)	78, 264, 459
DpnI	GATC	4 cut(s)	83, 435, 510, 758
DpnII	GATC	4 cut(s)	81, 433, 508, 756
Eam1104I	CTCTTC	3 cut(s)	299, 498, 572
EarI	CTCTTC	3 cut(s)	299, 498, 572
Eco130I	CCWWGG	1 cut(s)	654
Eco31I	GGTCTC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	435, 435, 837
Eco81I	CCTNAGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	654
ErhI	CCWWGG	1 cut(s)	654
FaeI	CATG	2 cut(s)	515, 763
FalI	AAGNNNNNCTT	2 cut(s)	304, 336
FaqI	GGGAC	2 cut(s)	469, 833
FatI	CATG	2 cut(s)	511, 759
FauNDI	CATATG	1 cut(s)	211
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	113, 673, 676
FokI	GGATG	1 cut(s)	4
Fsp4HI	GCNGC	3 cut(s)	113, 673, 676
FspBI	CTAG	3 cut(s)	468, 597, 798
GluI	GCNGC	3 cut(s)	113, 673, 676
HapII	CCGG	1 cut(s)	610
Hin1I	GRCGYC	1 cut(s)	773
Hin1II	CATG	2 cut(s)	515, 763
HinfI	GANTC	7 cut(s)	101, 215, 340, 382, 457, 569, 605
HpaII	CCGG	1 cut(s)	610
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	7 cut(s)	120, 220, 283, 462, 568, 705, 817
Hpy188III	TCNNGA	7 cut(s)	6, 397, 428, 512, 539, 760, 777
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	2 cut(s)	124, 306
HpyCH4III	ACNGT	4 cut(s)	56, 205, 299, 847
HpyCH4IV	ACGT	1 cut(s)	773
HpyCH4V	TGCA	2 cut(s)	115, 769
HpyF3I	CTNAG	3 cut(s)	78, 264, 459
HpySE526I	ACGT	1 cut(s)	773
Hsp92I	GRCGYC	1 cut(s)	773
Hsp92II	CATG	2 cut(s)	515, 763
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	4 cut(s)	81, 433, 508, 756
Lsp1109I	GCAGC	3 cut(s)	99, 684, 687
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	3 cut(s)	468, 597, 798
MaeII	ACGT	1 cut(s)	773
MaeIII	GTNAC	1 cut(s)	3
MalI	GATC	4 cut(s)	83, 435, 510, 758
MboI	GATC	4 cut(s)	81, 433, 508, 756
MflI	RGATCY	1 cut(s)	433
MluCI	AATT	7 cut(s)	152, 251, 473, 558, 616, 632, 825
MlyI	GAGTC	2 cut(s)	349, 451
MmeI	TCCRAC	3 cut(s)	250, 683, 802
MnlI	CCTC	8 cut(s)	33, 273, 424, 435, 538, 651, 652, 799
MroXI	GAANNNNTTC	2 cut(s)	636, 829
MseI	TTAA	2 cut(s)	155, 242
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	1 cut(s)	610
NciI	CCSGG	1 cut(s)	610
NdeI	CATATG	1 cut(s)	211
NdeII	GATC	4 cut(s)	81, 433, 508, 756
NlaIII	CATG	2 cut(s)	515, 763
NlaIV	GGNNCC	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	3
PagI	TCATGA	2 cut(s)	511, 759
PdmI	GAANNNNTTC	2 cut(s)	636, 829
PfeI	GAWTC	5 cut(s)	101, 215, 382, 569, 605
PkrI	GCNGC	3 cut(s)	114, 674, 677
PleI	GAGTC	2 cut(s)	348, 451
PpsI	GAGTC	2 cut(s)	348, 451
PsiI	TTATAA	1 cut(s)	738
PspN4I	GGNNCC	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	3 cut(s)	423, 525, 614
RsaNI	GTAC	3 cut(s)	422, 524, 613
RseI	CAYNNNNRTG	1 cut(s)	758
SaqAI	TTAA	2 cut(s)	155, 242
SatI	GCNGC	3 cut(s)	113, 673, 676
Sau3AI	GATC	4 cut(s)	81, 433, 508, 756
SchI	GAGTC	2 cut(s)	349, 451
ScrFI	CCNGG	1 cut(s)	610
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	3 cut(s)	227, 426, 539
SmoI	CTYRAG	3 cut(s)	227, 426, 539
Sse9I	AATT	7 cut(s)	152, 251, 473, 558, 616, 632, 825
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	3 cut(s)	468, 597, 798
StyD4I	CCNGG	1 cut(s)	608
StyI	CCWWGG	1 cut(s)	654
TaaI	ACNGT	4 cut(s)	56, 205, 299, 847
TaiI	ACGT	1 cut(s)	776
TaqI	TCGA	2 cut(s)	69, 84
TasI	AATT	7 cut(s)	152, 251, 473, 558, 616, 632, 825
TfiI	GAWTC	5 cut(s)	101, 215, 382, 569, 605
Tru1I	TTAA	2 cut(s)	155, 242
Tru9I	TTAA	2 cut(s)	155, 242
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	3 cut(s)	112, 672, 675
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	5 cut(s)	228, 609, 645, 762, 822
TspGWI	ACGGA	1 cut(s)	394
XapI	RAATTY	2 cut(s)	251, 825
XmnI	GAANNNNTTC	2 cut(s)	636, 829
XspI	CTAG	3 cut(s)	468, 597, 798
ZraI	GACGTC	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.