Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

62440861 .. 62442889

Gene Structure 2029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG434800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGTCTCGGTGCTTGCCTTACACGCCTTCCGTGAAGGCAGTGAATAGAGAGGCCTTGCTCGAACCGATTAAGCTCCAGAGAGAATTGGAGAAGAAAGCCAAGACACATAGGAAGAAAGAGAAGAAAGAGAAGAAGGAGAAGAAAGAGAAGGGGGAGAAGAGAAAATGGCATAAAGAGGATGAGTTATCTACTTGCGCCGTTATTTGGGGAGTGGATGCAATAGCAAGGGGCCCTCAAGTAGTAGAATCAAATCAACTGGAGAAAAGTGACATTACCGAAGAACATGAATTACCAACCTTGTCTGATAACATTTGCTACTTGTCTGATGGTATCCAAAGTGGCACAAAGAGGAAAAGAACCATCATTCGCATTAAATCATTGCCCAAGTGCAGTGATACAGAGTCCTCACATGCCTCTTGTGCCATGCATACTTCTGGGAAGACAGATTTCCAAACAGATCTAAAGATGACAGAAATTGTTCATGCACCTAGTGCAGAGACAAATGTAGAATTTGAGGAAGCCACTTGTGCTTCGGACCAAAAGGTGTCAACATGTGAAGACCATACGGAGGGTTTACTGCACCGGTCTCTGATTGGTAATTGGGTTCAACCTCAACTTCAGACAGCACCCGACGATTGTGGTGATGAAGATTGGCTTTTTGAGACGAAGCAGGAAAATAAACGTGGTTTTGAAAGATTCAAAGCTAGCAATGAGGTGGTGTCCCGTTGTACAAGTCAGACGTTGTGGCCACAAGCACACTGGTTACCTGATCCTGGCTTATCCGCACTACCCTTTACTGTTCCATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

269

Amino Acids

30.55

Weight (kDa)

6.34

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	783
AclWI	GGATC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	509
AcuI	CTGAAG	1 cut(s)	602
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	3 cut(s)	204, 568, 773
AflIII	ACRYGT	1 cut(s)	551
AgeI	ACCGGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	608, 692, 700
AjnI	CCWGG	1 cut(s)	772
AluBI	AGCT	2 cut(s)	73, 704
AluI	AGCT	2 cut(s)	73, 704
Alw26I	GTCTC	4 cut(s)	9, 491, 591, 656
AlwI	GGATC	1 cut(s)	764
AoxI	GGCC	3 cut(s)	51, 229, 746
ApaI	GGGCCC	1 cut(s)	233
ApoI	RAATTY	1 cut(s)	509
AsiGI	ACCGGT	1 cut(s)	582
Asp700I	GAANNNNTTC	1 cut(s)	477
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	3 cut(s)	229, 230, 535
AsuHPI	GGTGA	1 cut(s)	653
AsuNHI	GCTAGC	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	535
BaeGI	GKGCMC	1 cut(s)	233
BalI	TGGCCA	1 cut(s)	748
BanII	GRGCYC	1 cut(s)	233
BbsI	GAAGAC	2 cut(s)	446, 564
BccI	CCATC	2 cut(s)	320, 368
BceAI	ACGGC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	774
BciVI	GTATCC	1 cut(s)	341
BcoDI	GTCTC	4 cut(s)	9, 491, 591, 656
BfaI	CTAG	2 cut(s)	489, 705
BfuI	GTATCC	1 cut(s)	341
BglII	AGATCT	1 cut(s)	457
Bme1390I	CCNGG	1 cut(s)	774
Bme18I	GGWCC	1 cut(s)	535
BmgT120I	GGNCC	3 cut(s)	229, 230, 535
BmiI	GGNNCC	2 cut(s)	230, 231
BmrFI	CCNGG	1 cut(s)	774
BmsI	GCATC	1 cut(s)	205
BmtI	GCTAGC	1 cut(s)	708
BpiI	GAAGAC	2 cut(s)	446, 564
BpmI	CTGGAG	2 cut(s)	59, 278
BpuEI	CTTGAG	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	591
BsaWI	WCCGGW	1 cut(s)	582
Bsc4I	CCNNNNNNNGG	3 cut(s)	204, 568, 773
Bse118I	RCCGGY	1 cut(s)	582
Bse1I	ACTGG	2 cut(s)	261, 764
Bse3DI	GCAATG	2 cut(s)	377, 715
BseBI	CCWGG	1 cut(s)	774
BseGI	GGATG	2 cut(s)	184, 220
BseLI	CCNNNNNNNGG	3 cut(s)	204, 568, 773
BseMI	GCAATG	2 cut(s)	377, 715
BseNI	ACTGG	2 cut(s)	261, 764
BseSI	GKGCMC	1 cut(s)	233
BsgI	GTGCAG	3 cut(s)	409, 513, 563
BshFI	GGCC	3 cut(s)	53, 231, 748
BshTI	ACCGGT	1 cut(s)	582
BsiSI	CCGG	1 cut(s)	583
BslFI	GGGAC	1 cut(s)	706
BslI	CCNNNNNNNGG	3 cut(s)	204, 568, 773
BsmAI	GTCTC	4 cut(s)	9, 491, 591, 656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	706
BsnI	GGCC	3 cut(s)	53, 231, 748
Bso31I	GGTCTC	1 cut(s)	591
Bsp120I	GGGCCC	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp1407I	TGTACA	1 cut(s)	728
Bsp143I	GATC	2 cut(s)	457, 769
BspACI	CCGC	1 cut(s)	783
BspANI	GGCC	3 cut(s)	53, 231, 748
BspLI	GGNNCC	2 cut(s)	230, 231
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	591
BsrDI	GCAATG	2 cut(s)	377, 715
BsrFI	RCCGGY	1 cut(s)	582
BsrGI	TGTACA	1 cut(s)	728
BsrI	ACTGG	2 cut(s)	261, 764
BssAI	RCCGGY	1 cut(s)	582
BssMI	GATC	2 cut(s)	457, 769
Bst2UI	CCWGG	1 cut(s)	774
Bst4CI	ACNGT	1 cut(s)	799
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstAUI	TGTACA	1 cut(s)	728
BstC8I	GCNNGC	2 cut(s)	14, 706
BstEII	GGTNACC	1 cut(s)	762
BstF5I	GGATG	2 cut(s)	184, 220
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	2 cut(s)	460, 772
BstMAI	GTCTC	4 cut(s)	9, 491, 591, 656
BstMBI	GATC	2 cut(s)	457, 769
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 419, 491, 527
BstNI	CCWGG	1 cut(s)	774
BstNSI	RCATGY	2 cut(s)	413, 555
BstPI	GGTNACC	1 cut(s)	762
BstSCI	CCNGG	1 cut(s)	772
BstSLI	GKGCMC	1 cut(s)	233
BstV2I	GAAGAC	2 cut(s)	446, 564
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	341
BsuRI	GGCC	3 cut(s)	53, 231, 748
BtsCI	GGATG	2 cut(s)	184, 220
BtsI	GCAGTG	2 cut(s)	45, 397
BtsIMutI	CAGTG	3 cut(s)	45, 397, 757
Cac8I	GCNNGC	2 cut(s)	14, 706
CfoI	GCGC	1 cut(s)	197
Cfr10I	RCCGGY	1 cut(s)	582
Cfr13I	GGNCC	3 cut(s)	229, 230, 535
Csp6I	GTAC	1 cut(s)	729
CspAI	ACCGGT	1 cut(s)	582
CviAII	CATG	5 cut(s)	284, 410, 424, 482, 552
CviJI	RGCY	9 cut(s)	53, 73, 98, 231, 521, 655, 704, 748, 777
CviKI_1	RGCY	9 cut(s)	53, 73, 98, 231, 521, 655, 704, 748, 777
CviQI	GTAC	1 cut(s)	729
DpnI	GATC	2 cut(s)	459, 771
DpnII	GATC	2 cut(s)	457, 769
DraIII	CACNNNGTG	1 cut(s)	491
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Eco147I	AGGCCT	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	233
Eco31I	GGTCTC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	535
Eco57I	CTGAAG	1 cut(s)	602
Eco91I	GGTNACC	1 cut(s)	762
EcoO109I	RGGNCCY	2 cut(s)	229, 230
EcoO65I	GGTNACC	1 cut(s)	762
EcoRII	CCWGG	1 cut(s)	772
EcoT22I	ATGCAT	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	233
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	5 cut(s)	287, 413, 427, 485, 555
FaiI	YATR	9 cut(s)	108, 171, 285, 411, 425, 429, 483, 553, 564
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	706
FatI	CATG	5 cut(s)	283, 409, 423, 481, 551
FokI	GGATG	2 cut(s)	191, 227
FriOI	GRGCYC	1 cut(s)	233
FspBI	CTAG	2 cut(s)	489, 705
GlaI	GCGC	1 cut(s)	196
GsuI	CTGGAG	2 cut(s)	59, 278
HaeIII	GGCC	3 cut(s)	53, 231, 748
HapII	CCGG	1 cut(s)	583
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	5 cut(s)	287, 413, 427, 485, 555
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HincII	GTYRAC	1 cut(s)	549
HindII	GTYRAC	1 cut(s)	549
HinfI	GANTC	3 cut(s)	245, 401, 696
HpaII	CCGG	1 cut(s)	583
HphI	GGTGA	1 cut(s)	653
Hpy166II	GTNNAC	2 cut(s)	549, 575
Hpy188I	TCNGA	6 cut(s)	304, 325, 535, 591, 621, 738
Hpy188III	TCNNGA	1 cut(s)	76
Hpy8I	GTNNAC	2 cut(s)	549, 575
Hpy99I	CGWCG	1 cut(s)	635
HpyAV	CCTTC	4 cut(s)	28, 36, 127, 142
HpyCH4III	ACNGT	1 cut(s)	799
HpyCH4IV	ACGT	2 cut(s)	682, 740
HpyCH4V	TGCA	6 cut(s)	218, 390, 427, 485, 494, 580
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 419, 491, 527
HpySE526I	ACGT	2 cut(s)	682, 740
Hsp92II	CATG	5 cut(s)	287, 413, 427, 485, 555
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	2 cut(s)	457, 769
LmnI	GCTCC	1 cut(s)	78
LpnPI	CCDG	9 cut(s)	89, 242, 420, 596, 656, 745, 759, 780, 786
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	489, 705
MaeII	ACGT	2 cut(s)	682, 740
MaeIII	GTNAC	2 cut(s)	266, 762
MalI	GATC	2 cut(s)	459, 771
MboI	GATC	2 cut(s)	457, 769
MflI	RGATCY	1 cut(s)	457
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	748
MluCI	AATT	5 cut(s)	83, 287, 474, 509, 598
MluNI	TGGCCA	1 cut(s)	748
MlyI	GAGTC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	748
Mph1103I	ATGCAT	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	748
MseI	TTAA	2 cut(s)	69, 372
Msp20I	TGGCCA	1 cut(s)	748
MspI	CCGG	1 cut(s)	583
MspR9I	CCNGG	1 cut(s)	774
MvaI	CCWGG	1 cut(s)	774
MwoI	GCNNNNNNNGC	4 cut(s)	22, 419, 491, 527
NdeII	GATC	2 cut(s)	457, 769
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	5 cut(s)	287, 413, 427, 485, 555
NlaIV	GGNNCC	2 cut(s)	230, 231
NmuCI	GTSAC	1 cut(s)	266
NsiI	ATGCAT	1 cut(s)	429
NspI	RCATGY	2 cut(s)	413, 555
PceI	AGGCCT	1 cut(s)	53
PciI	ACATGT	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	245, 696
PinAI	ACCGGT	1 cut(s)	582
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
PscI	ACATGT	1 cut(s)	551
Psp6I	CCWGG	1 cut(s)	772
PspEI	GGTNACC	1 cut(s)	762
PspGI	CCWGG	1 cut(s)	772
PspN4I	GGNNCC	2 cut(s)	230, 231
PspOMI	GGGCCC	1 cut(s)	229
PspPI	GGNCC	3 cut(s)	229, 230, 535
PsrI	GAACNNNNNNTAC	2 cut(s)	273, 305
PsuI	RGATCY	1 cut(s)	457
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SaqAI	TTAA	2 cut(s)	69, 372
Sau3AI	GATC	2 cut(s)	457, 769
Sau96I	GGNCC	3 cut(s)	229, 230, 535
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	774
SduI	GDGCHC	1 cut(s)	233
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	535
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	5 cut(s)	83, 287, 474, 509, 598
SseBI	AGGCCT	1 cut(s)	53
SsiI	CCGC	1 cut(s)	783
SspMI	CTAG	2 cut(s)	489, 705
StuI	AGGCCT	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	772
TaaI	ACNGT	1 cut(s)	799
TaiI	ACGT	2 cut(s)	685, 743
TaqI	TCGA	1 cut(s)	60
TasI	AATT	5 cut(s)	83, 287, 474, 509, 598
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	2 cut(s)	245, 696
Tru1I	TTAA	2 cut(s)	69, 372
Tru9I	TTAA	2 cut(s)	69, 372
TscAI	CASTG	3 cut(s)	45, 397, 764
TseFI	GTSAC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	300, 470, 660
TspGWI	ACGGA	2 cut(s)	19, 581
TspRI	CASTG	3 cut(s)	45, 397, 764
VpaK11BI	GGWCC	1 cut(s)	535
XapI	RAATTY	1 cut(s)	509
XceI	RCATGY	2 cut(s)	413, 555
XcmI	CCANNNNNNNNNTGG	1 cut(s)	756
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	2 cut(s)	489, 705
Zsp2I	ATGCAT	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.