Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

36063723 .. 36065418

Gene Structure 1696 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024466

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGAGAGAATATAACGTGCGTGAATGTTGGACTATGCTCTTTAAATACAAAGTGGCAGCTGGTTGCCCCGGCCCGAACGACCTTGCCGATCATTGGCTGTGTGTTTTATCTACTTTACGGAGAGTGGTGATGAGGACGATGAAACATGAAGAAGCTTGGACCACAATGAAACCGAAACTGAAACTGAAACTGAAACTGAAACTGAAACTGAAACAAAGATTGCAGACCGGCCAAGACGCCCACTTCATCTGCGCACAACAAGGCACCGAGAAAATCGAAGTGAGGTCGTCGCCAAAAGGTGATGGGGGTACCTCAGCCGGAGTTGGGGACCAGATTCAGAGGCAAGCTGATGCACCAGCTTCTGAAACTCCGATCAAGAACTTTGATCAGCTTCCACCTCTGCTCCTAACTCAATCGATGTTCAACGATTCTGGTGATGAAGAAGAATGGATCTTTCAGAAGCAGAATCAGCAAACTGGACATGAATCTACATCTTCTAAAAGATTTAAAACTAACCTCGATGAGGCCATGCCCGGTTCTGCAAGTCGGACTTTGTGGCCACCAAAAGCACACTGGTTGCCTCAGGCTGGTATATATGCGTCACCCTTCACTGTTCCACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

23.4

Weight (kDa)

9.16

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	253
Acc65I	GGTACC	1 cut(s)	308
AccB1I	GGYRCC	2 cut(s)	263, 308
AclWI	GGATC	1 cut(s)	458
AcoI	YGGCCR	2 cut(s)	229, 557
AcyI	GRCGYC	1 cut(s)	237
AfaI	GTAC	1 cut(s)	310
AfiI	CCNNNNNNNGG	4 cut(s)	93, 324, 523, 587
AgsI	TTSAA	1 cut(s)	424
AluBI	AGCT	5 cut(s)	59, 155, 347, 359, 391
AluI	AGCT	5 cut(s)	59, 155, 347, 359, 391
AlwI	GGATC	1 cut(s)	458
AlwNI	CAGNNNCTG	1 cut(s)	362
AoxI	GGCC	4 cut(s)	70, 229, 525, 557
ApeKI	GCWGC	1 cut(s)	56
Asp718I	GGTACC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	254
AspS9I	GGNCC	3 cut(s)	71, 159, 328
AsuC2I	CCSGG	2 cut(s)	69, 534
AsuHPI	GGTGA	4 cut(s)	139, 311, 446, 594
AvaII	GGWCC	2 cut(s)	159, 328
AxyI	CCTNAGG	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	559
BanI	GGYRCC	2 cut(s)	263, 308
BbvCI	CCTCAGC	1 cut(s)	313
BbvI	GCAGC	1 cut(s)	68
BccI	CCATC	1 cut(s)	296
BclI	TGATCA	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	69, 534
BisI	GCNGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	58
Bme1390I	CCNGG	2 cut(s)	69, 534
Bme18I	GGWCC	2 cut(s)	159, 328
BmgT120I	GGNCC	3 cut(s)	71, 159, 328
BmiI	GGNNCC	3 cut(s)	265, 310, 329
BmrFI	CCNGG	2 cut(s)	69, 534
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	313
BpuMI	CCSGG	2 cut(s)	69, 534
Bsa29I	ATCGAT	1 cut(s)	416
BsaHI	GRCGYC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	4 cut(s)	93, 324, 523, 587
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	481, 578
Bse21I	CCTNAGG	1 cut(s)	582
BseCI	ATCGAT	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	93, 324, 523, 587
BseMII	CTCAG	2 cut(s)	327, 596
BseNI	ACTGG	2 cut(s)	481, 578
BseXI	GCAGC	1 cut(s)	68
BshFI	GGCC	4 cut(s)	72, 231, 527, 559
BshNI	GGYRCC	2 cut(s)	263, 308
BshVI	ATCGAT	1 cut(s)	416
BsiSI	CCGG	4 cut(s)	69, 228, 318, 534
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	4 cut(s)	93, 324, 523, 587
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	4 cut(s)	72, 231, 527, 559
Bsp143I	GATC	4 cut(s)	88, 372, 385, 450
BspANI	GGCC	4 cut(s)	72, 231, 527, 559
BspCNI	CTCAG	2 cut(s)	326, 595
BspDI	ATCGAT	1 cut(s)	416
BspLI	GGNNCC	3 cut(s)	265, 310, 329
BspPI	GGATC	1 cut(s)	458
BspT107I	GGYRCC	2 cut(s)	263, 308
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	481, 578
BssAI	RCCGGY	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	4 cut(s)	88, 372, 385, 450
BssNI	GRCGYC	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	613
BstACI	GRCGYC	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	2 cut(s)	313, 582
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstHHI	GCGC	1 cut(s)	254
BstKTI	GATC	4 cut(s)	91, 375, 388, 453
BstMBI	GATC	4 cut(s)	88, 372, 385, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstSCI	CCNGG	2 cut(s)	67, 532
BstV1I	GCAGC	1 cut(s)	68
BstX2I	RGATCY	1 cut(s)	450
BstYI	RGATCY	1 cut(s)	450
Bsu15I	ATCGAT	1 cut(s)	416
Bsu36I	CCTNAGG	1 cut(s)	582
BsuRI	GGCC	4 cut(s)	72, 231, 527, 559
BsuTUI	ATCGAT	1 cut(s)	416
BtsIMutI	CAGTG	2 cut(s)	571, 609
Cac8I	GCNNGC	1 cut(s)	345
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	1 cut(s)	254
Cfr10I	RCCGGY	1 cut(s)	227
Cfr13I	GGNCC	3 cut(s)	71, 159, 328
ClaI	ATCGAT	1 cut(s)	416
CseI	GACGC	2 cut(s)	245, 588
Csp6I	GTAC	1 cut(s)	309
CviAII	CATG	3 cut(s)	146, 482, 529
CviQI	GTAC	1 cut(s)	309
DdeI	CTNAG	2 cut(s)	313, 582
DpnI	GATC	4 cut(s)	90, 374, 387, 452
DpnII	GATC	4 cut(s)	88, 372, 385, 450
DraI	TTTAAA	2 cut(s)	43, 508
EaeI	YGGCCR	2 cut(s)	229, 557
Eco47I	GGWCC	2 cut(s)	159, 328
Eco81I	CCTNAGG	1 cut(s)	582
EcoNI	CCTNNNNNAGG	1 cut(s)	521
FaeI	CATG	3 cut(s)	149, 485, 532
FaiI	YATR	8 cut(s)	12, 35, 147, 483, 530, 593, 595, 597
FalI	AAGNNNNNCTT	2 cut(s)	535, 567
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	3 cut(s)	145, 481, 528
FbaI	TGATCA	1 cut(s)	385
Fnu4HI	GCNGC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	57
FspI	TGCGCA	1 cut(s)	253
GlaI	GCGC	1 cut(s)	253
GluI	GCNGC	1 cut(s)	57
HaeIII	GGCC	4 cut(s)	72, 231, 527, 559
HapII	CCGG	4 cut(s)	69, 228, 318, 534
HgaI	GACGC	2 cut(s)	245, 588
HhaI	GCGC	1 cut(s)	254
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	3 cut(s)	149, 485, 532
Hin6I	GCGC	1 cut(s)	252
HinP1I	GCGC	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	153
HinfI	GANTC	4 cut(s)	334, 428, 466, 485
HpaII	CCGG	4 cut(s)	69, 228, 318, 534
HphI	GGTGA	4 cut(s)	139, 311, 446, 594
Hpy188I	TCNGA	5 cut(s)	339, 364, 372, 459, 549
Hpy188III	TCNNGA	1 cut(s)	376
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	1 cut(s)	616
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	223, 353, 542
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	2 cut(s)	313, 582
HpySE526I	ACGT	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	3 cut(s)	149, 485, 532
HspAI	GCGC	1 cut(s)	252
KpnI	GGTACC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	88, 372, 385, 450
LmnI	GCTCC	1 cut(s)	408
Lsp1109I	GCAGC	1 cut(s)	68
LweI	GCATC	1 cut(s)	340
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	4 cut(s)	90, 374, 387, 452
MboI	GATC	4 cut(s)	88, 372, 385, 450
MboII	GAAGA	4 cut(s)	161, 452, 455, 486
MflI	RGATCY	1 cut(s)	450
MlsI	TGGCCA	1 cut(s)	559
MluNI	TGGCCA	1 cut(s)	559
MmeI	TCCRAC	2 cut(s)	8, 527
MnlI	CCTC	8 cut(s)	126, 276, 322, 333, 408, 517, 527, 591
Mox20I	TGGCCA	1 cut(s)	559
MscI	TGGCCA	1 cut(s)	559
MseI	TTAA	2 cut(s)	42, 507
Msp20I	TGGCCA	1 cut(s)	559
MspA1I	CMGCKG	1 cut(s)	59
MspI	CCGG	4 cut(s)	69, 228, 318, 534
MspR9I	CCNGG	2 cut(s)	69, 534
MwoI	GCNNNNNNNGC	1 cut(s)	469
NciI	CCSGG	2 cut(s)	69, 534
NdeII	GATC	4 cut(s)	88, 372, 385, 450
NlaIII	CATG	3 cut(s)	149, 485, 532
NlaIV	GGNNCC	3 cut(s)	265, 310, 329
NmuCI	GTSAC	1 cut(s)	600
NsbI	TGCGCA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	334, 428, 466, 485
PkrI	GCNGC	1 cut(s)	58
PspN4I	GGNNCC	3 cut(s)	265, 310, 329
PspPI	GGNCC	3 cut(s)	71, 159, 328
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	450
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	310
RsaNI	GTAC	1 cut(s)	309
SaqAI	TTAA	2 cut(s)	42, 507
SatI	GCNGC	1 cut(s)	57
Sau3AI	GATC	4 cut(s)	88, 372, 385, 450
Sau96I	GGNCC	3 cut(s)	71, 159, 328
ScrFI	CCNGG	2 cut(s)	69, 534
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	2 cut(s)	159, 328
StyD4I	CCNGG	2 cut(s)	67, 532
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	3 cut(s)	276, 416, 519
TfiI	GAWTC	4 cut(s)	334, 428, 466, 485
Tru1I	TTAA	2 cut(s)	42, 507
Tru9I	TTAA	2 cut(s)	42, 507
TscAI	CASTG	2 cut(s)	578, 616
TseFI	GTSAC	1 cut(s)	600
TseI	GCWGC	1 cut(s)	56
Tsp45I	GTSAC	1 cut(s)	600
TspDTI	ATGAA	6 cut(s)	155, 162, 182, 235, 453, 498
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	2 cut(s)	578, 616
VpaK11BI	GGWCC	2 cut(s)	159, 328
XagI	CCTNNNNNAGG	1 cut(s)	521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.