Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007252.1

Orthogroup ID

OG0005680

Physical Location & Seq

Genomic Coordinates Reverse (-)

28297 .. 29131

Gene Structure 835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007252.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ctggtgcttcaaaagctccagagagaattggagaaaaaagccaagacacataggaagaaagagaagaaggagaagaaagagaagggggagaagagaaaatggcataaagaggatgagttatctacttgcgctgttatttggggagtggatgcaatagcaaggggccctcaagtagtagaatcaaatcaactggagaaaagtgacattaccgaagaacatgaatttccaaccttgtctgataacatttgctacttgtctgatggcatccaaagtggcacaaagaggaaaagaaccatcattcgcattaaatcattgcccaagtgcagtgatgcggagtcctcacatgcctcttgtgccgagcatacttctgggaagtcagatttccaaacagatctaaagatgatagaaattgttcatgcacctagtgcagagacaaatgtagaatttgaggaagccacttgtgcttcggaccaaaaggtgtcaacatgtgaagaccatacggagggtttactgcaccagtctctgattggtaattgggttcaacctctacttcagacagcacccgacgattgtggtgatgaagattggctttttgagacgaagcaggaaaataaatgtggttttgaaagattcaaatctagcaatgaggtggtgtcccgttgtacaagtcagacgttgtggccacaagcacactggttacctgatcctggcttatccgcactaccctttactgttccattttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.97

Weight (kDa)

5.66

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20100 AT1G20100 AT1G75860 AT1G75860 AT1G76230
fragaria_vesca	FvH4_2g38160 FvH4_2g38160 FvH4_6g14711
prunus_persica	Prupe.1G362500_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1 Prupe.1G362800_v2.0.a1
pyrus_communis	pycom15g00820
rosa_chinensis	RchiOBHm_Chr6g0303321
rosa_laevigata	RLG00000011092 RLG00000024466
rosa_multiflora	Rmu_sc0007252.1_g000006 Rmu_sc0027227.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413280 Rroxscaffold_7G00164870
rosa_rugosa	Rorug06G0320400 Rorug06G0320500
rosa_samantha	Rh6AG434800 Rh6BG468300 Rh6CG446800 Rh6DG433600 Rh6DG433700
rosa_wichuraiana	Rw6G037650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	332, 717
AclWI	GGATC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	680
AcsI	RAATTY	2 cut(s)	221, 443
AcuI	CTGAAG	1 cut(s)	536
AdeI	CACNNNGTG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	664
AfiI	CCNNNNNNNGG	2 cut(s)	502, 707
AflIII	ACRYGT	1 cut(s)	485
AgsI	TTSAA	4 cut(s)	11, 542, 626, 634
AjnI	CCWGG	1 cut(s)	706
AluBI	AGCT	1 cut(s)	16
AluI	AGCT	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	425, 525, 590
AlwI	GGATC	1 cut(s)	698
AlwNI	CAGNNNCTG	1 cut(s)	523
AoxI	GGCC	2 cut(s)	163, 680
ApaI	GGGCCC	1 cut(s)	167
ApoI	RAATTY	2 cut(s)	221, 443
Asp700I	GAANNNNTTC	1 cut(s)	411
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	3 cut(s)	163, 164, 469
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	469
BaeGI	GKGCMC	1 cut(s)	167
BalI	TGGCCA	1 cut(s)	682
BanII	GRGCYC	1 cut(s)	167
BbsI	GAAGAC	1 cut(s)	498
BccI	CCATC	2 cut(s)	254, 302
BciT130I	CCWGG	1 cut(s)	708
BcoDI	GTCTC	3 cut(s)	425, 525, 590
BfaI	CTAG	2 cut(s)	423, 639
BglII	AGATCT	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	708
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	163, 164, 469
BmiI	GGNNCC	2 cut(s)	164, 165
BmrFI	CCNGG	1 cut(s)	708
BmsI	GCATC	3 cut(s)	139, 273, 319
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	634
Bsc4I	CCNNNNNNNGG	2 cut(s)	502, 707
Bse1I	ACTGG	3 cut(s)	195, 517, 698
Bse3DI	GCAATG	2 cut(s)	311, 649
Bse8I	GATNNNNATC	1 cut(s)	634
BseBI	CCWGG	1 cut(s)	708
BseGI	GGATG	3 cut(s)	118, 154, 264
BseJI	GATNNNNATC	1 cut(s)	634
BseLI	CCNNNNNNNGG	2 cut(s)	502, 707
BseMI	GCAATG	2 cut(s)	311, 649
BseNI	ACTGG	3 cut(s)	195, 517, 698
BseSI	GKGCMC	1 cut(s)	167
BsgI	GTGCAG	3 cut(s)	343, 447, 497
BshFI	GGCC	2 cut(s)	165, 682
BslFI	GGGAC	1 cut(s)	640
BslI	CCNNNNNNNGG	2 cut(s)	502, 707
BsmAI	GTCTC	3 cut(s)	425, 525, 590
BsmBI	CGTCTC	1 cut(s)	590
BsmFI	GGGAC	1 cut(s)	640
BsnI	GGCC	2 cut(s)	165, 682
Bsp120I	GGGCCC	1 cut(s)	163
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp1407I	TGTACA	1 cut(s)	662
Bsp143I	GATC	2 cut(s)	391, 703
BspACI	CCGC	2 cut(s)	332, 717
BspANI	GGCC	2 cut(s)	165, 682
BspLI	GGNNCC	2 cut(s)	164, 165
BspPI	GGATC	1 cut(s)	698
BsrDI	GCAATG	2 cut(s)	311, 649
BsrGI	TGTACA	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	195, 517, 698
BssMI	GATC	2 cut(s)	391, 703
Bst2UI	CCWGG	1 cut(s)	708
Bst4CI	ACNGT	1 cut(s)	733
Bst6I	CTCTTC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	662
BstEII	GGTNACC	1 cut(s)	696
BstF5I	GGATG	3 cut(s)	118, 154, 264
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	394, 706
BstMAI	GTCTC	3 cut(s)	425, 525, 590
BstMBI	GATC	2 cut(s)	391, 703
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 353, 425, 461
BstNI	CCWGG	1 cut(s)	708
BstNSI	RCATGY	2 cut(s)	347, 489
BstPI	GGTNACC	1 cut(s)	696
BstSCI	CCNGG	1 cut(s)	706
BstSLI	GKGCMC	1 cut(s)	167
BstV2I	GAAGAC	1 cut(s)	498
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	165, 682
BtsCI	GGATG	3 cut(s)	118, 154, 264
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	331, 691
CaiI	CAGNNNCTG	1 cut(s)	523
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	3 cut(s)	163, 164, 469
Csp6I	GTAC	1 cut(s)	663
CviAII	CATG	4 cut(s)	218, 344, 416, 486
CviJI	RGCY	7 cut(s)	16, 41, 165, 455, 589, 682, 711
CviKI_1	RGCY	7 cut(s)	16, 41, 165, 455, 589, 682, 711
CviQI	GTAC	1 cut(s)	663
DpnI	GATC	2 cut(s)	393, 705
DpnII	GATC	2 cut(s)	391, 703
DraIII	CACNNNGTG	1 cut(s)	425
EaeI	YGGCCR	1 cut(s)	680
Eam1104I	CTCTTC	1 cut(s)	86
EarI	CTCTTC	1 cut(s)	86
Eco24I	GRGCYC	1 cut(s)	167
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	696
EcoO109I	RGGNCCY	2 cut(s)	163, 164
EcoO65I	GGTNACC	1 cut(s)	696
EcoRII	CCWGG	1 cut(s)	706
EcoT38I	GRGCYC	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	590
FaeI	CATG	4 cut(s)	221, 347, 419, 489
FaiI	YATR	8 cut(s)	51, 105, 219, 345, 363, 417, 487, 498
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FaqI	GGGAC	1 cut(s)	640
FatI	CATG	4 cut(s)	217, 343, 415, 485
FokI	GGATG	3 cut(s)	125, 161, 251
FriOI	GRGCYC	1 cut(s)	167
FspBI	CTAG	2 cut(s)	423, 639
GlaI	GCGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	212
HaeIII	GGCC	2 cut(s)	165, 682
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	4 cut(s)	221, 347, 419, 489
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	483
HindII	GTYRAC	1 cut(s)	483
HinfI	GANTC	3 cut(s)	179, 335, 630
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	2 cut(s)	483, 509
Hpy188I	TCNGA	7 cut(s)	238, 259, 379, 469, 525, 555, 672
Hpy188III	TCNNGA	1 cut(s)	19
Hpy8I	GTNNAC	2 cut(s)	483, 509
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	2 cut(s)	61, 76
HpyCH4III	ACNGT	1 cut(s)	733
HpyCH4IV	ACGT	1 cut(s)	674
HpyCH4V	TGCA	5 cut(s)	152, 324, 419, 428, 514
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 353, 425, 461
HpySE526I	ACGT	1 cut(s)	674
Hsp92II	CATG	4 cut(s)	221, 347, 419, 489
HspAI	GCGC	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	391, 703
LmnI	GCTCC	1 cut(s)	21
LpnPI	CCDG	9 cut(s)	32, 176, 354, 530, 590, 679, 693, 714, 720
LweI	GCATC	3 cut(s)	139, 273, 319
MaeI	CTAG	2 cut(s)	423, 639
MaeII	ACGT	1 cut(s)	674
MaeIII	GTNAC	2 cut(s)	200, 696
MalI	GATC	2 cut(s)	393, 705
MboI	GATC	2 cut(s)	391, 703
MboII	GAAGA	7 cut(s)	67, 76, 85, 103, 224, 503, 593
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	167
MlsI	TGGCCA	1 cut(s)	682
MluCI	AATT	5 cut(s)	26, 221, 408, 443, 532
MluNI	TGGCCA	1 cut(s)	682
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	1 cut(s)	251
MnlI	CCTC	9 cut(s)	103, 177, 276, 349, 358, 442, 496, 555, 640
Mox20I	TGGCCA	1 cut(s)	682
MroXI	GAANNNNTTC	1 cut(s)	411
MscI	TGGCCA	1 cut(s)	682
MseI	TTAA	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	682
MspR9I	CCNGG	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	708
MwoI	GCNNNNNNNGC	4 cut(s)	13, 353, 425, 461
NdeII	GATC	2 cut(s)	391, 703
NlaIII	CATG	4 cut(s)	221, 347, 419, 489
NlaIV	GGNNCC	2 cut(s)	164, 165
NmeAIII	GCCGAG	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	200
NspI	RCATGY	2 cut(s)	347, 489
PciI	ACATGT	1 cut(s)	485
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	179, 630
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
PscI	ACATGT	1 cut(s)	485
Psp6I	CCWGG	1 cut(s)	706
PspEI	GGTNACC	1 cut(s)	696
PspGI	CCWGG	1 cut(s)	706
PspN4I	GGNNCC	2 cut(s)	164, 165
PspOMI	GGGCCC	1 cut(s)	163
PspPI	GGNCC	3 cut(s)	163, 164, 469
PstNI	CAGNNNCTG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	1 cut(s)	664
RsaNI	GTAC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	306
Sau3AI	GATC	2 cut(s)	391, 703
Sau96I	GGNCC	3 cut(s)	163, 164, 469
SchI	GAGTC	1 cut(s)	344
ScrFI	CCNGG	1 cut(s)	708
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	8 cut(s)	18, 233, 424, 480, 547, 651, 677, 703
SfaNI	GCATC	3 cut(s)	139, 273, 319
SinI	GGWCC	1 cut(s)	469
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
Sse9I	AATT	5 cut(s)	26, 221, 408, 443, 532
SsiI	CCGC	2 cut(s)	332, 717
SspMI	CTAG	2 cut(s)	423, 639
StyD4I	CCNGG	1 cut(s)	706
TaaI	ACNGT	1 cut(s)	733
TaiI	ACGT	1 cut(s)	677
TasI	AATT	5 cut(s)	26, 221, 408, 443, 532
TatI	WGTACW	1 cut(s)	662
TfiI	GAWTC	2 cut(s)	179, 630
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	2 cut(s)	331, 698
TseFI	GTSAC	1 cut(s)	200
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	3 cut(s)	234, 404, 594
TspGWI	ACGGA	1 cut(s)	515
TspRI	CASTG	2 cut(s)	331, 698
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	221, 443
XceI	RCATGY	2 cut(s)	347, 489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	524, 690
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	2 cut(s)	423, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.